#NEXUS [written Mon Apr 16 09:43:09 CEST 2018 by Mesquite version 3.40 (build 877) at PC-BORCHIELLINI/172.20.36.92] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=9; TAXLABELS 'D.melanogaster_Bazooka/969-992' 'M_musculus_PAR3/806-837' 'A.digitifera/1024-1048' 'OLMN_PAR3_G/649-672' 'T.adhaerens_PAR3/668-697' 'M.leidyi_PAR3/707-786' 'O.minuta_PAR3/1068-1088' 'S.ciliatum_PAR3/1147-1173' A.queenslandica ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=35; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX 'D.melanogaster_Bazooka/969-992' -------EHFSRDALGRR-SISEKH-HAALDAR-- 'M_musculus_PAR3/806-837' SPDVDPVLAFQREGFGRQ-SMSEKRTKQFSDAS-- 'A.digitifera/1024-1048' -------TPFKRDGFGRM-SMSEKRGRAALDAR-- 'OLMN_PAR3_G/649-672' -------SPFQRDAVGRL-SMSERR-KTALDPS-- 'T.adhaerens_PAR3/668-697' SPEPDG-SAFARDAPERH-SFSERH-SRTRNAQ-- 'M.leidyi_PAR3/707-786' -----------RDCIFRK-SMKKID-HVPFAPNP- 'O.minuta_PAR3/1068-1088' -P--------NRVVYGRI-TATSKS-KST-DSS-- 'S.ciliatum_PAR3/1147-1173' ----DTTTAYTTAASTHA-SEVDAD-RSAINAS-- A.queenslandica -------HKLRHNSPMRQDSLSPTNERSPWPMSSG ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 35; END; BEGIN NOTES; TAXABITS NAME = newlyAddedTaxon on = 1 - 9; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 35; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 35; END; BEGIN TREES[!'Parameters: Tree search criterion: minimize Tree value using character matrix']; Title 'Trees from Mesquite''s heuristic search'; ID 0162cd6808627; LINK Taxa = Taxa; TRANSLATE [0] 1 'D.melanogaster_Bazooka/969-992', [1] 2 'M_musculus_PAR3/806-837', [2] 3 'A.digitifera/1024-1048', [3] 4 'OLMN_PAR3_G/649-672', [4] 5 'T.adhaerens_PAR3/668-697', [5] 6 'M.leidyi_PAR3/707-786', [6] 7 'O.minuta_PAR3/1068-1088', [7] 8 'S.ciliatum_PAR3/1147-1173', [8] 9 A.queenslandica; TREE 'Tree 1 from search (criterion: minimize Tree value using character matrix)' = ((2,(((1,(7,5)),4),((9,6),8))),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 2 from search (criterion: minimize Tree value using character matrix)' = (((((1,(7,5)),4),((9,6),8)),3),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 3 from search (criterion: minimize Tree value using character matrix)' = ((((1,(7,5)),4),((9,6),8)),(2,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 4 from search (criterion: minimize Tree value using character matrix)' = (((2,(((7,5),4),((9,6),8))),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 5 from search (criterion: minimize Tree value using character matrix)' = (((2,(((7,5),4),((9,6),8))),1),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 6 from search (criterion: minimize Tree value using character matrix)' = ((2,(1,(((7,5),4),((9,6),8)))),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 7 from search (criterion: minimize Tree value using character matrix)' = ((2,(((7,5),4),((9,6),8))),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 8 from search (criterion: minimize Tree value using character matrix)' = ((2,(((1,5),4),(7,((9,6),8)))),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 9 from search (criterion: minimize Tree value using character matrix)' = ((2,((1,(((9,6),8),(7,5))),4)),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 10 from search (criterion: minimize Tree value using character matrix)' = ((2,((1,(7,(((9,6),8),5))),4)),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 11 from search (criterion: minimize Tree value using character matrix)' = ((((((7,5),4),((9,6),8)),1),3),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 12 from search (criterion: minimize Tree value using character matrix)' = (((((7,5),4),((9,6),8)),(1,3)),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 13 from search (criterion: minimize Tree value using character matrix)' = (((((1,5),4),(7,((9,6),8))),3),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 14 from search (criterion: minimize Tree value using character matrix)' = ((((1,(((9,6),8),(7,5))),4),3),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 15 from search (criterion: minimize Tree value using character matrix)' = ((((1,(7,(((9,6),8),5))),4),3),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 16 from search (criterion: minimize Tree value using character matrix)' = ((((9,6),8),(2,3)),((1,(7,5)),4))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 17 from search (criterion: minimize Tree value using character matrix)' = (((9,6),8),(((1,(7,5)),4),(2,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 18 from search (criterion: minimize Tree value using character matrix)' = (((((7,5),4),((9,6),8)),(2,3)),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 19 from search (criterion: minimize Tree value using character matrix)' = (((((7,5),4),((9,6),8)),1),(2,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 20 from search (criterion: minimize Tree value using character matrix)' = ((((7,5),4),((9,6),8)),(1,(2,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 21 from search (criterion: minimize Tree value using character matrix)' = ((((7,5),4),((9,6),8)),(2,(1,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 22 from search (criterion: minimize Tree value using character matrix)' = ((((1,5),4),(7,((9,6),8))),(2,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 23 from search (criterion: minimize Tree value using character matrix)' = (((1,(((9,6),8),(7,5))),4),(2,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 24 from search (criterion: minimize Tree value using character matrix)' = (((1,(7,(((9,6),8),5))),4),(2,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 25 from search (criterion: minimize Tree value using character matrix)' = ((((((7,5),4),2),((9,6),8)),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 26 from search (criterion: minimize Tree value using character matrix)' = ((((((7,5),2),4),((9,6),8)),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 27 from search (criterion: minimize Tree value using character matrix)' = ((((((7,2),5),4),((9,6),8)),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 28 from search (criterion: minimize Tree value using character matrix)' = (((((7,(2,5)),4),((9,6),8)),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 29 from search (criterion: minimize Tree value using character matrix)' = (((((7,5),(2,4)),((9,6),8)),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 30 from search (criterion: minimize Tree value using character matrix)' = ((((2,((5,4),((9,6),8))),7),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 31 from search (criterion: minimize Tree value using character matrix)' = ((((2,7),((5,4),((9,6),8))),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 32 from search (criterion: minimize Tree value using character matrix)' = (((2,(7,((5,4),((9,6),8)))),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 33 from search (criterion: minimize Tree value using character matrix)' = (((2,(((5,4),7),((9,6),8))),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 34 from search (criterion: minimize Tree value using character matrix)' = (((2,((5,4),(7,((9,6),8)))),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 35 from search (criterion: minimize Tree value using character matrix)' = ((((2,((7,5),((9,6),8))),4),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 36 from search (criterion: minimize Tree value using character matrix)' = ((((((7,5),4),2),((9,6),8)),1),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 37 from search (criterion: minimize Tree value using character matrix)' = ((((((7,5),2),4),((9,6),8)),1),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 38 from search (criterion: minimize Tree value using character matrix)' = ((((((7,2),5),4),((9,6),8)),1),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 39 from search (criterion: minimize Tree value using character matrix)' = (((((7,(2,5)),4),((9,6),8)),1),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 40 from search (criterion: minimize Tree value using character matrix)' = (((((7,5),(2,4)),((9,6),8)),1),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 41 from search (criterion: minimize Tree value using character matrix)' = ((((2,((5,4),((9,6),8))),7),1),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 42 from search (criterion: minimize Tree value using character matrix)' = ((((2,7),((5,4),((9,6),8))),1),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 43 from search (criterion: minimize Tree value using character matrix)' = (((2,(7,((5,4),((9,6),8)))),1),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 44 from search (criterion: minimize Tree value using character matrix)' = (((2,(((5,4),7),((9,6),8))),1),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 45 from search (criterion: minimize Tree value using character matrix)' = (((2,((5,4),(7,((9,6),8)))),1),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 46 from search (criterion: minimize Tree value using character matrix)' = ((((2,((7,5),((9,6),8))),4),1),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 47 from search (criterion: minimize Tree value using character matrix)' = ((2,(1,(7,((5,4),((9,6),8))))),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 48 from search (criterion: minimize Tree value using character matrix)' = ((2,(1,(((5,4),7),((9,6),8)))),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 49 from search (criterion: minimize Tree value using character matrix)' = ((2,(1,((5,4),(7,((9,6),8))))),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 50 from search (criterion: minimize Tree value using character matrix)' = (((2,(1,((7,5),((9,6),8)))),3),4)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 51 from search (criterion: minimize Tree value using character matrix)' = (((2,(1,((7,5),((9,6),8)))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 52 from search (criterion: minimize Tree value using character matrix)' = ((2,(1,((7,5),((9,6),8)))),(4,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 53 from search (criterion: minimize Tree value using character matrix)' = (((((7,5),4),2),((9,6),8)),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 54 from search (criterion: minimize Tree value using character matrix)' = (((((7,5),2),4),((9,6),8)),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 55 from search (criterion: minimize Tree value using character matrix)' = (((((7,2),5),4),((9,6),8)),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 56 from search (criterion: minimize Tree value using character matrix)' = ((((7,(2,5)),4),((9,6),8)),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 57 from search (criterion: minimize Tree value using character matrix)' = ((((7,5),(2,4)),((9,6),8)),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 58 from search (criterion: minimize Tree value using character matrix)' = (((2,((5,4),((9,6),8))),(1,3)),7)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 59 from search (criterion: minimize Tree value using character matrix)' = (((2,((5,4),((9,6),8))),7),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 60 from search (criterion: minimize Tree value using character matrix)' = (((2,7),((5,4),((9,6),8))),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 61 from search (criterion: minimize Tree value using character matrix)' = ((2,(7,((5,4),((9,6),8)))),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 62 from search (criterion: minimize Tree value using character matrix)' = ((2,(((5,4),7),((9,6),8))),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 63 from search (criterion: minimize Tree value using character matrix)' = ((2,((5,4),(7,((9,6),8)))),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 64 from search (criterion: minimize Tree value using character matrix)' = ((2,((5,4),((9,6),8))),(7,(1,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 65 from search (criterion: minimize Tree value using character matrix)' = (((2,((7,5),((9,6),8))),(1,3)),4)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 66 from search (criterion: minimize Tree value using character matrix)' = (((2,((7,5),((9,6),8))),4),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 67 from search (criterion: minimize Tree value using character matrix)' = ((2,((7,5),((9,6),8))),(4,(1,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 68 from search (criterion: minimize Tree value using character matrix)' = (((2,((7,5),4)),(1,3)),((9,6),8))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 69 from search (criterion: minimize Tree value using character matrix)' = ((2,((7,5),4)),(((9,6),8),(1,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 70 from search (criterion: minimize Tree value using character matrix)' = (2,(((7,5),4),((1,3),((9,6),8))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 71 from search (criterion: minimize Tree value using character matrix)' = ((2,(((5,4),1),(7,((9,6),8)))),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 72 from search (criterion: minimize Tree value using character matrix)' = ((2,((5,4),(1,(7,((9,6),8))))),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 73 from search (criterion: minimize Tree value using character matrix)' = (2,((1,(((9,6),8),(7,5))),(3,4)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 74 from search (criterion: minimize Tree value using character matrix)' = ((((1,(7,(((9,6),8),5))),2),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 75 from search (criterion: minimize Tree value using character matrix)' = ((2,((1,(7,(((6,8),9),5))),4)),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 76 from search (criterion: minimize Tree value using character matrix)' = ((2,((1,(7,((6,(9,8)),5))),4)),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 77 from search (criterion: minimize Tree value using character matrix)' = (((2,(1,(7,(((9,6),8),5)))),3),4)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 78 from search (criterion: minimize Tree value using character matrix)' = ((2,(1,(7,(4,(((9,6),8),5))))),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 79 from search (criterion: minimize Tree value using character matrix)' = ((2,(1,(7,(((9,6),8),5)))),(4,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 80 from search (criterion: minimize Tree value using character matrix)' = (2,((1,(7,(((9,6),8),5))),(3,4)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 81 from search (criterion: minimize Tree value using character matrix)' = ((((((5,4),((9,6),8)),7),1),3),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 82 from search (criterion: minimize Tree value using character matrix)' = ((((((5,4),7),((9,6),8)),1),3),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 83 from search (criterion: minimize Tree value using character matrix)' = (((((5,4),(7,((9,6),8))),1),3),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 84 from search (criterion: minimize Tree value using character matrix)' = (((((9,6),8),(1,3)),2),((7,5),4))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 85 from search (criterion: minimize Tree value using character matrix)' = (((((5,4),((9,6),8)),(1,3)),2),7)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 86 from search (criterion: minimize Tree value using character matrix)' = (((((5,4),((9,6),8)),(1,3)),7),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 87 from search (criterion: minimize Tree value using character matrix)' = (((((5,4),((9,6),8)),7),(1,3)),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 88 from search (criterion: minimize Tree value using character matrix)' = (((((5,4),7),((9,6),8)),(1,3)),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 89 from search (criterion: minimize Tree value using character matrix)' = ((((5,4),(7,((9,6),8))),(1,3)),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 90 from search (criterion: minimize Tree value using character matrix)' = ((((5,4),((9,6),8)),(7,(1,3))),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 91 from search (criterion: minimize Tree value using character matrix)' = ((((5,4),((9,6),8)),(1,3)),(7,2))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 92 from search (criterion: minimize Tree value using character matrix)' = ((((7,5),((9,6),8)),(4,(1,3))),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 93 from search (criterion: minimize Tree value using character matrix)' = (((((5,4),1),(7,((9,6),8))),3),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 94 from search (criterion: minimize Tree value using character matrix)' = ((((5,4),(1,(7,((9,6),8)))),3),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 95 from search (criterion: minimize Tree value using character matrix)' = (((4,3),2),(1,(((9,6),8),(7,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 96 from search (criterion: minimize Tree value using character matrix)' = (((4,3),2),(1,(7,(((9,6),8),5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 97 from search (criterion: minimize Tree value using character matrix)' = ((((1,(7,(((6,8),9),5))),4),3),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 98 from search (criterion: minimize Tree value using character matrix)' = ((((1,(7,((6,(9,8)),5))),4),3),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 99 from search (criterion: minimize Tree value using character matrix)' = (((1,(7,(4,(((9,6),8),5)))),3),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 100 from search (criterion: minimize Tree value using character matrix)' = (((1,(7,5)),(((9,6),8),(2,3))),4)[% ] [% ] [% setBetweenBits = selected ]; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1523864589564; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7281991453854480307; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5772248516224670883; mqVersion 340; checksumv 0 3 2343968193 null getNumChars 35 numChars 35 getNumTaxa 9 numTaxa 9 short false bits 1048575 states 1048575 sumSquaresStatesOnly 8.4493612006E11 sumSquares 8.4493612006E11 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 201; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 500; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7281991453854480307 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 0162cd6808627; toggleUseWeights off; endTell; setAssignedID 1489.1523864574504.4954097065760868581; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 499 428; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow bootstrapFrequency; toggleShow posteriorProbability; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5772248516224670883 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 499 428; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;