#NEXUS [written Tue Apr 17 08:42:37 CEST 2018 by Mesquite version 3.40 (build 877) at PC-BORCHIELLINI/172.20.36.92] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=19; TAXLABELS M.musculus_beta_cat D.melanogaster_beta_cat B.floridae_beta_cat N.vectensis_beta_cat M.leidyi_beta_cat T.adhaerens_beta_cat C.candelabrum_beta_cat O.lobularis_beta_cat O.carmela_beta_cat 'Oscarella-sp beta cat' A.queenslandica_beta_cat A.vastus_beta_cat O.minuta_beta_cat 'S.ciliatum-1 ' 'S.coactum-1 ' 'L.complicata-1 ' 'S.ciliatum-2 ' 'S.coactum-2 ' 'L.complicata-2' ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=957; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX M.musculus_beta_cat YAMTRAQRVRAAMFPETLDE----------------GMQIPSTQ-----------FDAAHP--TNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-DVETARCTAGTLHNLSH--HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA---KMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT--K-QEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR--AGDR----------EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGA-IPRLVQLLVRAHQDTQR-RTSMGGTQQQ----FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT---------APLTEL-LH-SRNEGVATYAAAVLFRMSEDKPQD-------------YKKR---LSVEL----TSSLFRTEPM---------AWN-ETADLGLDIGAQGEALGYRQDDPSYR--------------------------------------SFHSG---------------------------------GYGQDALGMDP------MMEHEMGG----------HHPG------------------------------------------ADYPVD--------GLP-----DLG---------HAQDLM-DGLPP-----GDSNQ---LAWFDTDL- D.melanogaster_beta_cat LSQTRSQRVRAAMFPETLEE----------------GIEIPSTQ-----------FDPQQP--TAVQRLSEPSQMLKHAVVNLINYQDDAELATRAIPELIKLLND-EDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVRAISNSN-DLESTKAAVGTLHNLSH--HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQDGS---KMAVRLAGGLQKMVTLLQRNN-VKFLAIVTDCLQILAYGNQESKLIILASGGPNELVRIMRSYDYEKLLWTTSRVLKVLSVCSSNKPAIVDAGGMQALAMHLGNMSPRLVQNCLWTLRNLSDAAT--K-VEGLEALLQSLVQVLGST-DVNVVTCAAGILSNLTCNNQRNKATVCQVGGVDALVRTIIN--AGDR----------EEITEPAVCALRHLTSRHVDSELAQNAVRLNYGLSVIVKLLHPPSRWPLIKAVIGLIRNLALCPANHAPLREHGA-IHHLVRLLMRAFQDTERQRSSIATTGSQQPSAYADGVRMEEIVEGTVGALHILARESHNRALIRQQSVIPIFVRLLFNEIENIQRVAAGVLCELAADKEGAEIIEQEGAT---------GPLTDL-LH-SRNEGVATYAAAVLFRMSEDKPQD-------------YKKR---LSIEL----TNSLLREDNN---------IWA-NADLG-----MGPDLQDMLGPEEAY--E-------GLYGQ-------------------GP--PSVHS---SHGGRAFHQQGYDT--LPIDSMQGLEISSPVGGG----GAGGAPGNGGAVGGASGGG---GNIGAIPPSGA----------------P-----------------------TSPYSMDM-----DVGEI-----DAG---------ALNFDL-DAMPTPP---NDNNN--LAAWYDTDC- B.floridae_beta_cat LIQTRSQRVRAAMFPETLDE----------------GTQIPSTQ-----------FDPNQP--TAVQRLAEPSQMLKHAVVNLINYQDDADLATRAIPELTKLLND-EDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVRAMQTTN-DVETTRCAAGTLHNLSH--HRQGLLSIFKSGGIPALVKLLGSQVESVLFYAITTLHNLLLHQEGS---KMAVRLAGGLQKMVALLQRNN-VKFLAIVTDCLQILAYGNQESKLIILASGGPGELVRIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGQHLSHQSPRLVQNCLWTLRNLSDAAT--KQQEALEGLLQTLVHMLAHN-DINIVTCAAGILSNLTCNNGRNKMIVCQVGGIEALVRTILQ--AGDR----------EDITEPAVCALRHLTSRHPEAEMAQNAVRLHYGLPVLVKLLHPPSRWPLIKAVIGLMRNLALCPANHAPLREQGA-LPRLIQLLMRAHQDTQR-RASMGSTSSQ--GGYVDGVRMEEIVEGTVGALHILARDAHNRAVIRSLNCIPLFVQLLYSNIENIQRVAAGVLCELAQDKESAEIIEAEGAT---------APLTEL-LH-SRNEGVATYAAAVLFRMSEDKPQD-------------YKKR---LSVEL----TSSLCRADAM---------PWA-EPHEL-----HDPGMMMMPPDEPAYRGE-------GMFSH-------------------HSSVSSVHSGQHSTMGRQPHQVQPRTGLYSTGSYHDQPPHTPIDHGMDHMDMGPGPGGPHHMQGAAGG----------HPSH------------------------------------------SDYPQDL-----DLGIPT---ADLG--------------L-EGLPPQG---GDNNQ---LAWFDTDL- N.vectensis_beta_cat FVSTRSQRIRQAMFPETLEE----------------GAQIPSTQ-----------FDSTSS--TAVQRLAEPSLMLKQAVVNLINYQDDADLATRAIPELAKLLND-DDQVVVGQAAMMVHQLSRKDASRHAIMNSPQMVAALVRALNNMS-DVETTRCAAGTLHNLSH--HRQGLLSIFKSGGIPALVKLLGSQVEAVVFYAITTLHNLLLHQEGA---KMAVRLAGGLQKMVALLGRGN-VKFLAIVTDCLHVLAYGNQESKLIILASGGPAELVRIMKTYTYEKLLFTTSRVLKVLSVDTDNKMAIVEAGGMQALAMHLGHQSNRLVQNCLWTLRNLSDAAT--K-EDGLDNLLQMLVQLLSSN-DIQVVTCAAGILSNLTCNNPRNKQLVCRFGGIEALVRTCLQ--AGDR----------EEITEPAVCALRHLTSRHADAEAAQNAVRIHYGLPVLVKLLHPPARWPLIKAVIGLMRNLALCPANHAPIREHGG-LPRLVQLLMRANQDMQR-RPGHNV--------VIDGVRMDDIVEGTVGALHILAREAHNRAVIRSLHCISLFVQLLYSPNENIQRVAAGVLCELAQDKEGAEAIEAENAT---------QPLTDL-LH-SRNEGIAAYAAAVLFRMSEDKSQD-------------YKKR---LSVEL----TSSLFREDA----------PWQ-EMEGDLMDTYQMPGAYTYPQESMDY----------------------------------------------------------------------------------------------MQGPVDYG----------HH----------------------------------------------YDFH--------GDP-----NMS---------HQ--------PP-----GGHYQNPGGPLYDTDL- M.leidyi_beta_cat QTQSRSQRLRAELFPDASEE----------------QHNPAPTPS---------HASPTTPVTTTLQTLGEPTPVSHNTMENIAHYQDDAELAMQAIPEFAKLLSS-KNPEVQVSVTTCIHALSKKEPSMHALLSYPQLISTLLHTLSTAT-DQEVVRCCTGTLHNLSY--LREGLESIQKYRGIPILCELLSNSSENVLYYTITTLHNMIQRHKSS---QLDICLSGGLEKMVSVLKYSDKPQFVAMVAECIHMLCHRNPDKKQAVAACSGPLHLVKLLQTSSVEYVTWAVARALKTLSVCNKNKKCILEAGGMQALARHLDTGSQRVTEEVLYTMRNLSNAVKGGS-VDNVDPILTKLMDVLART-NINLIACSVGCLSNLTCNNPNNKKTVFRAGGLDTLLRCLLQ--NQAI----------PSVAEPLLCTLRHINYKHSEYEQTQHAFRTSGGISLITKVLSTAQHWAVIKAACGLIRNLALNAANIPFFKETGL-LLHLIQACLRITDHYKG-----GIN------ENRDGIKLEDIMWESLKTLESVSCHPEIRAQLDNPISAHLLMKCINSNNENLVQVALSSVVQFESHENFMVLIKNDPRF---------ELIGKL-CH-FRNPKIAQMAAVLSNRLNEVQVDVKP--P---------------TAMEQPPHQTPGIFVNGGV---------QWG----------ESVPHVRTENGSAASHLNDVVDLD--ATTAQYRNDSFIKSPGSMPVVPPGAGGPLQPSPHQQ-------YSPRY----HAPSPHVQ-----------------------------HSTYNGVAFPTTYSTSPH-----------YTTQSTYHPFPGFHHTPYQPP-------------------------------------------------------------QPPQ-SNRNWYAA-I- T.adhaerens_beta_cat RGSVRTQRLRNQLMPDTDQA-----------SH---DNTIQNNG----------EFSPTRP--STVQRLNEPSAALRQVIHDLMNYQDDNDLATRSIPEAINLLSH-EDPMTVVQIAKFINHLSKKEASLHAIISSTQLLASLIHATRRFFENIDLVKLTASTLHNLSL--QQSGLHAIVKASSVTILLEMVRYLSQPVMFYAITTLHNLLLNYAES---RMDIFLSRGLEVMIQLLPFNN-VKFQAIVADCMYILAHSHPDCKSVIYNSEGHIILIDIISNCDYEKLLWTAIRVLKLLSITASTKVNLIKAGAMQALARHLNSDSNRIVIHTLWTMRNLSDAAT--K-VENINNALGSLVHLLNSN-EPSIIMCIGGIISNLTCNNSQNKTYLCKIGGVQALLDVLSA--YSDR----------EDIIEPAICALRHLTNKHPYSEIAQNSVRDHKGIPIVINILKNCNSFAVRKAIVGLIRNIALCQYNIPILYEFHG-INKLTDILLETCQVMNQ-RLSKHST------TEIDGIRLEDIIESTVGALHVVSRHPQYRALLTDSKCIRIFTQLLRSNSNSIVCVATGVLSELAQDKEGARAMHYLGTP---------QILQNL-AS-HRDEAIATFATSALYRMSEDRGSI-------------NRRQ--GPSIDLNGSFTGSLSRSERFEL-----------------------------NNSMNSRSPSYRE----DAYSHHS--------GIMNINEMMNMQPALSNGGQQDININVPVSDAG----GISSPHIN-GMYEQIQNLSLDAGSNYD-GIPAEQQSMHSYYSNPSHRGPVNPSIHSNNS--------VQHNP-----------------------PESYTPTKFAT----GTNNSNSVASS---------AHQTPIWDESNSF----RMVQE------------ C.candelabrum_beta_cat QMGSRTDRVRAAMFPDTVPED---------------SISMPMT---------------GQP--TTVQRLAEPSQMLKNAVLNLVNYQDDADLALRAIPELTKLLYS-ENPTAVQQAAMVVHHLSKKEASRHAIMNSLPMMGALVRVMGGTS-DAETMRCVSGTLHNLSH--HRQGLSVIYKSGGIPALVRLLG----------------LL--------------------------------KFLAITVDCLHVLAYGNQESKLNILGSGGPAELIRIMKVYTYEKLLWTTSRLLKVLSVCPMNKQAIVECGGIQALAHHLGSRSGRLVQNCMWCLRNLSDAAT--H-LENLGGLLQLLIQFLGVA-DFNYVTCAAGILSNLTCNNPQNKVLVCQLGGVEALLRTCVN--AGDR----------EDITEPAVCALRHLTSRHSEAEMAQNTIRVSYGIPSIIRLLHHPSRWPLIKAVIGLLRNLALYGENHIAIRENAA-LPKLVQLLMKAQQVMQR-RLSLGPNGLPYADGIQDGVRMEEIVEGCVGALHILARDPHNRVVIRGLQCIPIFVQLLYSNHETIVRLTTGALCEMAQDKESADIIEAENAS---------SALTEL-L----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- O.lobularis_beta_cat GGGGGLSHPPHGMYSEPIQDDP--------MSR-MSSVSIPGTP--------------AEP--SSMQRLAEPSAMLRNAVMSIINYQDDADLAGRVIPEATRLLGD-GDPSVVNHAALIVHELSKREASRHAIIGNPALIGGLVHVLGTTN-EPDAMRSISGTLHNLSH--HRQGLSSMYKAGGIPALVRLLGSPVENVLFYAITTLHNLLLHQDGS---KMSLRIAGGLQKMVSLLSRGN-PKFLAITVDCLHILAYGSQESKLSILGCGGPAELVRIMKTFTYEKLLWTTSRLLKVLSVCPMNKQAIVDAGGLAALTAHLTGRSSRLVQNCLWCLRNLSDAAS--H-LQNQQQLLQILIQMLSIN-DVASVTCAVGILSNLTCNNLQNKVVVCQCGGIEALLRICSQ--AGDH----------DEIAEPAVCALRHLTSRHPEAEMAQNTIRLQYGIPIIVKILDPPSKWPLLKAVIGLIRNLALSPHNHTPIRENGG-IHRLCQLLSNAHQIVQR-QLSLGPDTKP---ARV----------------------------------------LLYSSHENVVRVASGALCEMAFEKEYAEAIEAENAA---------APLTEL-LQ-SRNEGIATYAAAALFRMSEDKSQD-------------YRTR---LSVEL----TSTLARTDSA-------GGQWS-ETDTF-----SRPLRQQLQQQLIARPGGYQGMQHMQQQQQQQ-----------------------------QQPPQAAAAAAA--------AHH-----------------------AAVARQMSGGGVGPQVPGGFNPSYQ-------------QQQP--------MIPQAS--YQQQQP-QPDLSYD--------GMV----GQSG---------G--FPL--AMQTD----------GPQQYFDTDL- O.carmela_beta_cat -----ARTPSVPLYSEPL-DDP--------MSR-MSSVSIPGTP--------------AEP--SSVQRLAEPSAMLRDAVMSIINYQDDADLAGRVIPEATRLLAD-PDPSVVKQAAMVVHELSKREASRHAIIGSPALIGGLVHVLGTTN-DPDAMRSISGTLHNLSH--HRQGLSSMYKAQGIPALVRLLGSQVENVLFYAITTLHNLLLHQEGS---KMSLRIAGGLQKLVSLLSRGN-PKFLAITVDCLHILTYGNQESKLSILGCGGSAELVRIMRMFTYEKLLWTTSRLLKVLSVCPMNKQAIVEANGVAILTAQLSGRSSRLVQNCLWCLRNLSDASS--H-LQNQQQLLQILIHLLSGN-DVTSVECAAGILSNLTCNNQQNKVIVCQCGGIEALLRTCAQ--AGSR----------DEVAEPAVCALRHLTSRHPEAEMAQNTIRLQYGIPLIVKILDPPSKWPLLKAAIGLIRNLALSPQNHGAIRENGG-IHRLCQLLTKSQQTIQR-RLALGPDAGP---ARVEGVYMEEVVEGCVGALHILARDISNRALIRGLNSIPLFVQLLYSSHENVVRVAAGALCEMAQDKENADTIEAENAT---------APLTEL-LQ-SRNEGIATYAAATLFRMSEDKSQD-------------YRTR---LSVEL----TSSLARTDS--------GGQWSQQADVF-----GRQLP--------------------GHSYQ-------------------------------PAPPSALHQLPPQGG---SFSHH---------------------GPPPVQRQTSGG--MSQVPGGFNPSFHGGAPHQQHLPPVMSSQP----PH-HHMAPA---HYPQQ--QPDMSYD--------GF-----GSFG---------GQDFPMQESMQTE----------GSQHFFDTDL- 'Oscarella-sp beta cat' ----------YAAVAEPYQDDP--------MSR-MSSVSIPGTP--------------AEPAASSMQRLAEPSAMLRNAVMSIINYQDDADLAGRVIPEATRLLGD-GDPNVVKQAALVVHELSKREASRHAIIGSPALIGGLVHVLGTTN-EPDAMRSISGTLHNLSH--HRQGLSSMYKAGGIAALVRLLGSPVENVLFYAITTLHNLLLHQEGS---KMSLRIAGGLQKMVSLLSRGN-PKFLAITVDCLHILAYANQESKLSILGCGGPAELVRIMKTYNYEKLLWTTSRLLKVLSVCLMNKQAIVDAGGVGVLTVHLTGRSSRLVQNCLWCLRNLSDASS--H-LPNQQHLLQILIQFLSLD-DPNSVTCAVGILSNLTCNNIQNKVVVCQCGGIEALLRICAQ--TGNR----------DEIAEPAVCALRHLTSRHPEAEMAQNTIRLQYGIPIIVKILDPPSKWPLLKAVVGLIRNLALSPHNYQPIRQNGG-IHRLCQLLSKAHEMVQR-RLALAPDAGP---ARVEGVQMEEIVEGCVGALHVLARDPGSRADIRALNCIPLFVQLLYSSHENIVRVAAGALCEMAQDKEYADAIEAENAA---------APLTEL-LQ-SRNEGIATYAAAALFRMSEDKSQD-------------YRTR---LSVEL----TSSLARTDSAG------GGQWS-ESDMF-----AQSLR---HRQGLGRAGP-------ATFAQQA-----------------------------PPPPQAPFQQSP------VHSHHH------IGGG----GGG---GAGIMQRQTSGG----QIPGGFNPSFQ-------------AQQP----PS-GAGPGAP--HAFQH--QQELSFD--------GFTGS-AAAGG---------GGGFAV-ESMQTD------------QKYFDTDL- A.queenslandica_beta_cat IQSTSGDRVRLTMFPGSSAE----------------GEEVPNTQ-----------VAPERQ--SNLQRMTQSTQIIRAAVQNLVNYQSNTELTAKALPEIISLLSH-QDQTVITEASKLIHDLSKKEASLTAINANPAAVKGIIQTLASVN-NAEVQKPLSGAVHNISS--NSQGLLVIYNCSGIPFLVRLLTSPVDAVLFYAVTTIHNMLLHFEPA---KMDVRLAGGLEKMVALLVKDN-VKFLAITVDCLHILAYGHQDSKLIVLASGGPSLLVRIMRIYTYEKLLWTVSRLLKALSVCSSNKPEIVQAGGMQVLSLHLGHRSNRLVQNILFTLRNLSDAAT--K-QDNLDELLQQLIGFLSSN-DVHYLTCAAGVLSNLTCNNAKNKTMVCQLRGIEALLRTIGN--NTDK----------GEVIERCVCTLRHITSRHLAAEMAQNAIRELNGIPMLMNLLQPQTRYPLIKALIGLFRNLSLCSDNHTVLREQGC-IPKLWQLLNRSFQELQR-RSGQPGM----ALGIVDGVSMNEVVECSTAALHLLARDPYNRLIMRQLNVIPMFVQLLYMRNEGIQRAAVGGLSELALDPEGAEQIEREGAP---------TPLGEL-LH-SPNEGIAAYAAAVLFCLSDDRNGELPHLPADIGGGVPYRQDYMGLDTNP----PQSYYSTSTPPLHQQQLRGHYSNPGSVP-----GSQPF----TPNMSEPPS-------GLMTPHS-----EFELPLDFDEYAHGAGSYHHSGV-HTPGSHPHSGHH----TPSHPHHS-GIHTP-GGGSHPHSA----HHSGIHTPAGGSHSGVHTPNHYLPSSY-------------PQNPAPPIPHHPIAPQAPPTHPYHQPPQQSMGPNYYRV----------QTQGG---------NYNPPSPALMDT-----------ANTGWIDTDL- A.vastus_beta_cat MSGGQADRLKATLFPETLES-----------------NSVQSTQ-----------VDTTKS--TNVQRLTVPSQDIKQSLCNLLKHQSDTEVTSRVIPELLRVLQL-SDRDIIEKAAWVVDSLAKKDASRQAILSSPKLIVALINAVGTNV-NDETAKLAANTLSTLSS--KPQGKRLIHSCDGIGFLLSLLKSEGEYIVMFAITCLHNIFMCQNDSATYKETFRSKGGVQHLVRLLNGNR-VKLLAIITDCLHLLACNNAETKLTIYEYNGPVLLVKMLTENTYEKLLWTIGRLLRILVLCPSNKHAIVQAGGLPALSKHLNNSSPRIAQTYLRSLLTLSDIAR--P-EDNLEPMTLMLLNLLQGKCDVNMMTSAAGILSNITCNNPQNKDAICEHNGIQVLINIVIC--YTQKTDVSINTPQHNELLEGIICTLRHVTSRHQKAEFAQNEVRLQKGLDLVLQLFLTTTHWTLIKACLGLLRNLSLSSTNRSELRRLSV-IPQLIELLRRSLDILKK-TADEINY------EPQDGVNMEDVLVLVLSTVEILSRDAINRHMIGKQDIIPLLVALLYSERNRLIEHCAGCLCELAQDVYNIQVMERENCA---------EAMNKL-MHQTQDETIVAYAAMTLHRLNEHRTLD-------------AHKM---MNEEM----LSGLMPMIPPG------PGNVTPVGDLDYFPMAEDPNFYFYNPDQNAY---------VQTTQDHQ----------MD-----NGHCIQIHPNSHAM--------------TPSMPPNH--------------------SFPDPR----------LHPPPYYADKPDYYD--------IAN------------LQVP-THQQEAYYPQELGYGYNSM-------------------------LDYPP-QTMREFYPTHHDVSQ-PIFRHF----- O.minuta_beta_cat RTNGQGERLKSALFTESHSD-----------------RNCASTP-----------TD--HQ--TNVQRLTRSSQAIKKSITNLLLYKTDTEITTQVIPELLKVLKD-TNREIIEKASLVIATLAKKEASRNALLSTPLVLTALIQAIGHNV-NDEAAKYSSSAISSLSV--NPLGVKMIHTCDGLAFIMLLLTSDVEHVIVFAITCLHNMLGCRHNASVYMEEFRNRGGVQHLVRLLNGHR-ERVLAIIADCLHLLAINNEETKQIIYNYNGSVLLVKILADSNFEKLIWIVGRLIKVLTTCPNHKQAIVQAGGIPILSKHLTSNSPRIVQLYLRPLLTLSDVVR--P-EDNLESLIAMLLNLLRMKEDTTSMMYIVGILSNITCNNPINKTAICNHNGIHILLYIVLE--FSQKRDININSPQINELLEAVICTLRHVTSKHEREDFAQNEVREQKGLDVILQLFLNTTHWTLIKACLGLLRNLSISTHNRIELRKLSV-IPQLVELLRRAIEILFK-TTEHGNT------TTQEGVNMEDVLVLILSTVEVLAKDHVNRNLIGKHDSIPVIIRLLFSDRKRVLEHAVACLCELSGDQFNMQEMERANCS---------DMLVKL-LQRCQDENIEAYVTMTLHKFNEFRNYD-------------GNKI---ISGGL----MDTIPANIPTA------PRNVTPIGDLDYYNMSDDPGLAFYNPGNN-----------YGHIQEQQ----------MDY----YGNCVPMQQNQH-------------------ISHTH--------------------GFPDSR----------MTPSLFYPDKQSYYE--------MNSQP----------MQIP-YYHPE----QDLTYQYNT---------------------------DFPI-PQTREFY--QQDIPQ-----YF----- 'S.ciliatum-1 ' ----TAEQVRSRQQPSTAHT----------------ATVAPSSSSTNTFAFAAAATSGAES--SSALRIAQGVEILQSALGDLANFQNDSDLAVRMVPELTQLIAS-GNTVTVTQALDMAQQLSRTDASRPIMCDSPQLVANLMKLAGKSDVEADVVSKAMAVVYDISK--EDQGLVHIRQCHGIATLVRHLSSNTEMLMFLAISTLHNMLQNLEYS---KGDIRLAGGIQRFVSLLHHSN-VKVICMAIDCLYLICYSHPESKLLVLSANGPIEIVRILRTHSYEKLLWATSRLGKVLSVCPSNKPAMVDAGAMQAFSIHLEHKSQRFVQNVLWAMRNLSDQAT--T-LPGMGDLLHSLIDLLASE-DATTVTCAAGILSNLTCNNEQNKVTVCREGGIEALIRTCAQ--AGDH----------DDITEPAVCALRHLTNRHLEAEVAQNAVRHHHGVRVLVRLLDPPSKWPLIKAVLGLLRNLALCPANHTAVRECGG-VHRLVELLIAARKDIDA-CNARGTS------SFVDGVHMEEIVEGTTGALHILARDVQNRTILQNLQCVPLFVQLLYFDVENIQRVASGVLYELAQSKDSAIVMEKAGAT---------SPLTEL-LH-SRNEAIATYSAAILLKLSEDKTGD-------------YKKR---LSVEL----SNSLFRAEA----------HWSAPSDVA-----NFADL----GDGMSSVGG-------SVISSR------------------AGASSMASSNY---------------------------------------------GYGGQRRGVRRG------PGHGNQQAA------------IAESA-----------------------LEEIPPDMLELLDDPALIEAAMANAG---------QHGDDS-EGMGS-------------SAWQDTDL- 'S.coactum-1 ' --------------------------------------------------------------------------------WDATDQQNDTDLAVRMVPELTQLLTS-GNITTLTQALDMAHQLSRTDASRPIMCDSPALVANLMKLASKTELDVEVISKAMSVVYNISK--EDQGLVHIRQCHGIAALVRHLSSNVELLMFNAISTLHNLLQNLEYS---KADIRLAGGIQRFVSLLHHAN-AKLVCMAIDCLYLICFSHPESKLLVLSANGPIEVVRILRTQSYEKLLWATSRLAKVLSVCPSNKPAMVDAGAMQAFSIHLEHKSQRFIQNLLWAMRNLSDQAT--N-LPGLGDLLHSLIELLSSE-DTTTVTCAAGILSNLTCNNEQNKVIVCREGGIEALIRTCAQ--AGDH----------DDITEPAVCALRHLTNRHLEAEVAQNAVRHHHGVRVLVRLLDPPSKWPLIKAVLGLLRNLALCPGNHTAVRECGG-VHRLVELLIAARKDIDA-CNARGAS------AFIDGVHMEEIVEGTTGALHILARDVQNRTILQNLQCVPLFVQLLYFDVENIQRVAAGVLYELAQSKESSMVMEKAGAT---------APLTEL-LH-SRNEAIAT----------------------------------------------------------------------------------------------------------------------------------------GY---------------------------------------------GYGGQRKPMRRG------PGH--QQAM------------IAESA-----------------------LEEISPDMLDLLDDPALIEAAMANAG---------HLGDDS-EGMGS-------------STWQDTDL- 'L.complicata-1 ' ----------------------------------------------------------NHS--SGVERNRSNKSAGRPQDLSASAQQDDSDVALRMVPELTQLLSPGSSKATVSQALTMAHQLSRTDASRPIMCDSAELVANLVKLASNAELDVDVISQAMAVVYNISK--EDQGLVHIRQCHGITALIRHLSSNTETLMFHSISTLHNLLQNLEPS---KADIRLAGGVQRFVSLLHHPN-VKLVCMAVDCLYLISYSHPESKLLVLSANGAVEIVRILRNHTYEKLLWASSRLAKVLSVCPSNKPALVDAGAMQVFCMHLEHKSPRVVQNILWAMRNLSDQAT--N-QPGLGDLLHSLIQLLSSE-DPTIVTCAAGILSNLTCNNEQNKVTVCREGGIEALIRTCIQ--AGDH----------DDITEPAVCALRHLTNRHLEAEVAQNAVRYHNGIRTLVRLLDPPSKWPLIKAVLGLLRNLALCPANHTTVREAGG-VHRLVELLIAARKDIDA-CIARGTS------AFVDGVHMEEIVEGTTGALHILARDVQNRTILQNLQCVPLFVQLLYFDVENIQRVASGVLYELAQSKEAAQVMEKAGAT---------APLTEL-LH-SRNEAVATYSAAVLFKLSEDKSSD-------------YKKR---LSVEL----SNSLFRSEA----------HWSAPSDVA-----NFADL----NDGLSSVGG-------SVISSR------------------AG-GSVASSGF---------------------------------------------GYGAQRKPARRM------PGG--GQAA------------IAESA-----------------------LEEISPDMLELLDDPALVEAAMAHASGQHHHQQQQHGGDDM-DNMGS-------------SAWQDTDL- 'S.ciliatum-2 ' SHVSPQAGGSGGIASASSSPGLQLGQAIAALSRSAASTPSQETT-----------LVDRLA--AVEQRLSVTAKGLQSSSVKQLSSADATDLITKSMDDIVFALSKPENNAVLLPAANIVFHLSKADGARSVMGQSKTLMSAIIGALALTQ-TTEVVLKLSGAAHFLTQKYKAATTAYIHECGGTRVICSMLKFAIEGAIVYAVQILYILLTEVPAS---KKVVRECEAIQGLVYLLGRIRRDRLLALILDCLYHICMGDPDSKLMTMACNGPQEIVRVLQTNDYQKLVTTGMRVLKVLSICQHVKESIVKCGGMQVMAKHIHGEG-KIKRNVLLTIRNLSDTAG--K-EPNMEPIIGSCLELLGDS-DVTTVTCSVGILSNLTCNNPPNKNFLFMKSGIQSLLQLCSYCSPDNQ----------KDIIERCLCTLRHMTNGFERAEHATQAFLVNDGHKLISRYMA-PSSWYFTKHAAGLLDNIAAYHTNHAILCEDPDLLPRLAAVINMVKSSHDV---------------KQDNISLREVHDMCMQCLKALVQNENNHQKLLSLDCMALLE-------------------EASHMDPHINAMENLTIGADPAPEPATQELNELFNLDGGADDYGDAASAV----------------E------PFGKK---LTDEV----GLALLSGNPAM------------AEDYLNLGGEDFDALH----------------SGMANFTQSG-------------------------------------------------------------------------GEQEK--------------------------------------------------------------------------------------------------------SSNRE---------------------- 'S.coactum-2 ' AAAGPSPRASPGMLSMTSSG----------------SSVSPATP-----------VAVEVS--TPERRLQTMLRSLQAGAMKQVAPGEASDIALKVIDDLTSVMTS-EDQQSLLICSNIIFQFSKLDGSRQVISQSKMLMPRLLKALASTQ-VTEVVLKLAGALHNLCH-YGKQAVASLHQCGGTRVICQMLKFTIDGATVYAVQILYSLLNKEPES---KVEAREHDGLQNLVALLGRTVRDRLLALILDCLYHLCIGDPSSKLVILGCSGPQEIIRVLRNNTYPKLIMTAMRVLKVLSISKETKDAIVENGGLQAMAAHITGEP-RIKRNVLLTIRNLSDIAG--S-QRDLEPMLATCLDLLGDN-DITTVTCAVGILSNLTCNNPHNKQYLCVKSGIEALMQLCHKCSPVHQ----------QDIVERSLCTLRHMTNGHERADVATQTMCIHQGHMLVANYMQ-PSSWFFTKHAAGILQNLTANQANHPAICEHESLLPSVVHVLEFIKQTPHE---------------YLDDVKLYDVSEMCQRSLQYLLQVEANHSCLIRLNCVPLLQ-------------------EAAA-AEPLLAMENMSLSNDPQPPIP-NPMNDF-LQSINLENVGDISELDLLATAPSDVST--------------------AVLEV----ERALLDDPSLN------------ADDLLNLDFQELEALR----------------SQMGEYGQPG-------------------------------------------------------------------------GPSDLDDPAVSN-------------------V---LKDLLQMQS----------FPSP------------------------GCD---SSSSA----------------TSMTS-------------SSGFSS--- 'L.complicata-2' ----------------------------------GVGTPHGES--------------------TPELRLRVTLKAFQ-GNMKQISASEASDVAQKCTDDLLALLCS-EENQSLLLASNIIFQLSKLEGSRSVISQSRALISPLLKALASTQ-STEVVLKLGGALHNMTQ-RRGGALSVIHQCGGTPVICQMLKFTIDGATVYAVQILYNLLQSQPDA---KIVARRNDGLQNLVALLGRTVRDRLLALIMDCLYHLSIGDQESKLIILNCQGPQEIIRVLNTNTYAKLIMTAMRVLKVLSICAKAKQVIVQKGGIQAMAKHMTGES-RLKRNVLLTIRNLSDATS--S-QQDLKDVLVTCVQMLSDT-DVTTVTCCVGILSNLTCNNPSNKSIVYQENGVEALVHLCQQCFQGQH----------YEIIERCLCTLRHITNGHEKVDVATQRVCIHGGLELIANLLR-TEKWVLIKPAAGLLQNIAAVCPNHPAICDSEA-LGAAVQVMNFIQPRMDQ---------------VLEEIKISEVFETCLRMIQHLAGNLANHTALFSLNCGPFLA-------------------AAAANEEHIIAMQGLSLTPSDTPSVPSNPASILGLDPTDLPDMGDFDAVL------------------------LQQQ---LH------------------------------DEDLAGL---DINELL----------------EDFGKYTTAS-------------------------------------------------------------------------GEFLNTEPADAS-------------------V---MEDLLASLP----------GASP------------------------GSAG--QGQGG---------PGAYPGPSAMT----------------------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 957; END; BEGIN NOTES; TAXABITS NAME = newlyAddedTaxon on = 1 - 19; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 957; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 957; END; BEGIN TREES[!'Parameters: Tree search criterion: minimize Tree value using character matrix']; Title 'Trees from Mesquite''s heuristic search'; ID 0162d249fd5e22; LINK Taxa = Taxa; TRANSLATE [0] 1 M.musculus_beta_cat, [1] 2 D.melanogaster_beta_cat, [2] 3 B.floridae_beta_cat, [3] 4 N.vectensis_beta_cat, [4] 5 M.leidyi_beta_cat, [5] 6 T.adhaerens_beta_cat, [6] 7 C.candelabrum_beta_cat, [7] 8 O.lobularis_beta_cat, [8] 9 O.carmela_beta_cat, [9] 10 'Oscarella-sp beta cat', [10] 11 A.queenslandica_beta_cat, [11] 12 A.vastus_beta_cat, [12] 13 O.minuta_beta_cat, [13] 14 'S.ciliatum-1 ', [14] 15 'S.coactum-1 ', [15] 16 'L.complicata-1 ', [16] 17 'S.ciliatum-2 ', [17] 18 'S.coactum-2 ', [18] 19 'L.complicata-2'; TREE 'Tree 1 from search (criterion: minimize Tree value using character matrix)' = ((1,((((((((5,6),((18,19),17)),(13,12)),11),(16,(15,14))),(((8,10),9),7)),4),2)),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 2 from search (criterion: minimize Tree value using character matrix)' = ((((((((((5,6),((18,19),17)),(13,12)),11),(16,(15,14))),(((8,10),9),7)),4),2),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 3 from search (criterion: minimize Tree value using character matrix)' = (((((((((5,6),((18,19),17)),(13,12)),11),(16,(15,14))),(((8,10),9),7)),4),2),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 4 from search (criterion: minimize Tree value using character matrix)' = ((1,(((((((((18,19),17),(13,12)),(5,6)),11),(16,(15,14))),(((8,10),9),7)),4),2)),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 5 from search (criterion: minimize Tree value using character matrix)' = (((((((((((18,19),17),(13,12)),(5,6)),11),(16,(15,14))),(((8,10),9),7)),4),2),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 6 from search (criterion: minimize Tree value using character matrix)' = ((2,(1,3)),(((((((5,6),((18,19),17)),(13,12)),11),(16,(15,14))),(((8,10),9),7)),4))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 7 from search (criterion: minimize Tree value using character matrix)' = (2,((((((((5,6),((18,19),17)),(13,12)),11),(16,(15,14))),(((8,10),9),7)),4),(1,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 8 from search (criterion: minimize Tree value using character matrix)' = ((((((((((18,19),17),(13,12)),(5,6)),11),(16,(15,14))),(((8,10),9),7)),4),2),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 9 from search (criterion: minimize Tree value using character matrix)' = ((((((((5,6),((18,19),17)),(13,12)),11),(16,(15,14))),(((8,10),9),7)),(2,(1,3))),4)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 10 from search (criterion: minimize Tree value using character matrix)' = (((((((5,6),((18,19),17)),(13,12)),11),(16,(15,14))),(((8,10),9),7)),((2,(1,3)),4))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 11 from search (criterion: minimize Tree value using character matrix)' = ((2,(1,3)),((((((((18,19),17),(13,12)),(5,6)),11),(16,(15,14))),(((8,10),9),7)),4))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 12 from search (criterion: minimize Tree value using character matrix)' = (2,(((((((((18,19),17),(13,12)),(5,6)),11),(16,(15,14))),(((8,10),9),7)),4),(1,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 13 from search (criterion: minimize Tree value using character matrix)' = (((((((((18,19),17),(13,12)),(5,6)),11),(16,(15,14))),(((8,10),9),7)),(2,(1,3))),4)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 14 from search (criterion: minimize Tree value using character matrix)' = (((((8,10),9),7),((2,(1,3)),4)),(((((5,6),((18,19),17)),(13,12)),11),(16,(15,14))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 15 from search (criterion: minimize Tree value using character matrix)' = ((((8,10),9),7),((((((5,6),((18,19),17)),(13,12)),11),(16,(15,14))),((2,(1,3)),4)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 16 from search (criterion: minimize Tree value using character matrix)' = ((((((((18,19),17),(13,12)),(5,6)),11),(16,(15,14))),(((8,10),9),7)),((2,(1,3)),4))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 17 from search (criterion: minimize Tree value using character matrix)' = ((((((5,6),((18,19),17)),(13,12)),11),((((8,10),9),7),((2,(1,3)),4))),(16,(15,14)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 18 from search (criterion: minimize Tree value using character matrix)' = (((((5,6),((18,19),17)),(13,12)),11),(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 19 from search (criterion: minimize Tree value using character matrix)' = (((((8,10),9),7),((2,(1,3)),4)),((((((18,19),17),(13,12)),(5,6)),11),(16,(15,14))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 20 from search (criterion: minimize Tree value using character matrix)' = ((7,((((((5,6),((18,19),17)),(13,12)),11),(16,(15,14))),((2,(1,3)),4))),((8,10),9))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 21 from search (criterion: minimize Tree value using character matrix)' = (7,(((8,10),9),((((((5,6),((18,19),17)),(13,12)),11),(16,(15,14))),((2,(1,3)),4))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 22 from search (criterion: minimize Tree value using character matrix)' = ((((8,10),9),7),(((((((18,19),17),(13,12)),(5,6)),11),(16,(15,14))),((2,(1,3)),4)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 23 from search (criterion: minimize Tree value using character matrix)' = ((16,(((((5,6),((18,19),17)),(13,12)),11),((((8,10),9),7),((2,(1,3)),4)))),(15,14))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 24 from search (criterion: minimize Tree value using character matrix)' = (16,((((((5,6),((18,19),17)),(13,12)),11),((((8,10),9),7),((2,(1,3)),4))),(15,14)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 25 from search (criterion: minimize Tree value using character matrix)' = (((((((18,19),17),(13,12)),(5,6)),11),((((8,10),9),7),((2,(1,3)),4))),(16,(15,14)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 26 from search (criterion: minimize Tree value using character matrix)' = ((11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14)))),(((5,6),((18,19),17)),(13,12)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 27 from search (criterion: minimize Tree value using character matrix)' = (11,((((5,6),((18,19),17)),(13,12)),(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14)))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 28 from search (criterion: minimize Tree value using character matrix)' = ((((((18,19),17),(13,12)),(5,6)),11),(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 29 from search (criterion: minimize Tree value using character matrix)' = (((8,10),(7,((((((5,6),((18,19),17)),(13,12)),11),(16,(15,14))),((2,(1,3)),4)))),9)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 30 from search (criterion: minimize Tree value using character matrix)' = ((8,10),((7,((((((5,6),((18,19),17)),(13,12)),11),(16,(15,14))),((2,(1,3)),4))),9))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 31 from search (criterion: minimize Tree value using character matrix)' = ((7,(((((((18,19),17),(13,12)),(5,6)),11),(16,(15,14))),((2,(1,3)),4))),((8,10),9))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 32 from search (criterion: minimize Tree value using character matrix)' = (7,(((8,10),9),(((((((18,19),17),(13,12)),(5,6)),11),(16,(15,14))),((2,(1,3)),4))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 33 from search (criterion: minimize Tree value using character matrix)' = ((15,(16,(((((5,6),((18,19),17)),(13,12)),11),((((8,10),9),7),((2,(1,3)),4))))),14)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 34 from search (criterion: minimize Tree value using character matrix)' = (15,((16,(((((5,6),((18,19),17)),(13,12)),11),((((8,10),9),7),((2,(1,3)),4)))),14))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 35 from search (criterion: minimize Tree value using character matrix)' = ((16,((((((18,19),17),(13,12)),(5,6)),11),((((8,10),9),7),((2,(1,3)),4)))),(15,14))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 36 from search (criterion: minimize Tree value using character matrix)' = (16,(((((((18,19),17),(13,12)),(5,6)),11),((((8,10),9),7),((2,(1,3)),4))),(15,14)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 37 from search (criterion: minimize Tree value using character matrix)' = ((((5,6),((18,19),17)),(11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14))))),(13,12))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 38 from search (criterion: minimize Tree value using character matrix)' = ((((5,6),(11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14))))),((18,19),17)),(13,12))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 39 from search (criterion: minimize Tree value using character matrix)' = (((5,6),((18,19),17)),((11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14)))),(13,12)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 40 from search (criterion: minimize Tree value using character matrix)' = (((11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14)))),(((18,19),17),(13,12))),(5,6))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 41 from search (criterion: minimize Tree value using character matrix)' = (((11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14)))),(5,6)),(((18,19),17),(13,12)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 42 from search (criterion: minimize Tree value using character matrix)' = ((11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14)))),((5,6),(((18,19),17),(13,12))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 43 from search (criterion: minimize Tree value using character matrix)' = (11,(((((18,19),17),(13,12)),(5,6)),(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14)))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 44 from search (criterion: minimize Tree value using character matrix)' = (((8,10),(7,(((((((18,19),17),(13,12)),(5,6)),11),(16,(15,14))),((2,(1,3)),4)))),9)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 45 from search (criterion: minimize Tree value using character matrix)' = ((10,((7,((((((5,6),((18,19),17)),(13,12)),11),(16,(15,14))),((2,(1,3)),4))),9)),8)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 46 from search (criterion: minimize Tree value using character matrix)' = (10,(8,((7,((((((5,6),((18,19),17)),(13,12)),11),(16,(15,14))),((2,(1,3)),4))),9)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 47 from search (criterion: minimize Tree value using character matrix)' = ((8,10),((7,(((((((18,19),17),(13,12)),(5,6)),11),(16,(15,14))),((2,(1,3)),4))),9))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 48 from search (criterion: minimize Tree value using character matrix)' = ((15,(16,((((((18,19),17),(13,12)),(5,6)),11),((((8,10),9),7),((2,(1,3)),4))))),14)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 49 from search (criterion: minimize Tree value using character matrix)' = (15,((16,((((((18,19),17),(13,12)),(5,6)),11),((((8,10),9),7),((2,(1,3)),4)))),14))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 50 from search (criterion: minimize Tree value using character matrix)' = ((13,(((5,6),((18,19),17)),(11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14)))))),12)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 51 from search (criterion: minimize Tree value using character matrix)' = (13,((((5,6),((18,19),17)),(11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14))))),12))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 52 from search (criterion: minimize Tree value using character matrix)' = ((((5,6),(11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14))))),(13,12)),((18,19),17))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 53 from search (criterion: minimize Tree value using character matrix)' = ((13,(((5,6),(11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14))))),((18,19),17))),12)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 54 from search (criterion: minimize Tree value using character matrix)' = (13,((((5,6),(11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14))))),((18,19),17)),12))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 55 from search (criterion: minimize Tree value using character matrix)' = (((5,6),((13,12),(11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14)))))),((18,19),17))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 56 from search (criterion: minimize Tree value using character matrix)' = ((((18,19),17),((11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14)))),(13,12))),(5,6))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 57 from search (criterion: minimize Tree value using character matrix)' = ((5,((11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14)))),(((18,19),17),(13,12)))),6)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 58 from search (criterion: minimize Tree value using character matrix)' = (5,(((11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14)))),(((18,19),17),(13,12))),6))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 59 from search (criterion: minimize Tree value using character matrix)' = ((10,((7,(((((((18,19),17),(13,12)),(5,6)),11),(16,(15,14))),((2,(1,3)),4))),9)),8)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 60 from search (criterion: minimize Tree value using character matrix)' = (10,(8,((7,(((((((18,19),17),(13,12)),(5,6)),11),(16,(15,14))),((2,(1,3)),4))),9)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 61 from search (criterion: minimize Tree value using character matrix)' = (((18,19),(((5,6),(11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14))))),(13,12))),17)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 62 from search (criterion: minimize Tree value using character matrix)' = ((18,19),((((5,6),(11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14))))),(13,12)),17))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 63 from search (criterion: minimize Tree value using character matrix)' = (((18,19),((5,6),((13,12),(11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14))))))),17)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 64 from search (criterion: minimize Tree value using character matrix)' = ((18,19),(((5,6),((13,12),(11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14)))))),17))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 65 from search (criterion: minimize Tree value using character matrix)' = ((5,(((18,19),17),((11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14)))),(13,12)))),6)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 66 from search (criterion: minimize Tree value using character matrix)' = (5,((((18,19),17),((11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14)))),(13,12))),6))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 67 from search (criterion: minimize Tree value using character matrix)' = ((19,((((5,6),(11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14))))),(13,12)),17)),18)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 68 from search (criterion: minimize Tree value using character matrix)' = (19,(18,((((5,6),(11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14))))),(13,12)),17)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 69 from search (criterion: minimize Tree value using character matrix)' = ((19,(((5,6),((13,12),(11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14)))))),17)),18)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 70 from search (criterion: minimize Tree value using character matrix)' = (19,(18,(((5,6),((13,12),(11,(((((8,10),9),7),((2,(1,3)),4)),(16,(15,14)))))),17)))[% ] [% ] [% setBetweenBits = selected ]; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1523947357246; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7640847479408084168; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5004768470338408804; mqVersion 340; checksumv 0 3 1938491632 null getNumChars 957 numChars 957 getNumTaxa 19 numTaxa 19 short false bits 1048575 states 1048575 sumSquaresStatesOnly 1.04360175707197E14 sumSquares 1.04360175707197E14 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 201; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7640847479408084168 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 0162d249fd5e22; toggleUseWeights off; endTell; setAssignedID 2444.1523946731385.6182015030059284869; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 499 392; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow bootstrapFrequency; toggleShow posteriorProbability; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5004768470338408804 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 499 392; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;