#NEXUS [written Sun Jul 22 15:34:16 BST 2018 by Mesquite version 3.51 (build 898) at KN-ENVY15/192.168.0.18] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=175; TAXLABELS 'Fimbriimonas ginsengisoli A_A0A068NZ43_9BACT' 'Paramecium tetraurelia A_A0CSW7_PARTE' 'Ostreococcus lucimarinus A_A4RZH4_OSTLU' 'Physcomitrella patens A_A9TW02_PHYPA' 'Monosiga brevicollis A_A9V2N5_MONBE' 'Cloacimonas acidaminovorans A_B0VIL6_CLOAI' 'Cryptosporidium muris A_B6ADE9_CRYMR' 'Populus trichocarpa A_B9GGV0_POPTR' 'Ricinus communis A_B9SE49_RICCO' 'Gemmatimonas aurantiaca A_C1A8L3_GEMAT' 'Micromonas commoda A_C1DZ11_MICCC' 'Micromonas pusilla A_C1N2S4_MICPC' 'Anaerococcus prevotii A_C7RHL7_ANAPD' 'Thermobaculum terrenum A_D1CC00_THET1' 'Acidaminococcus fermentans A_D2RKG8_ACIFV' 'Naegleria gruberi A_D2VRI7_NAEGR' 'Helicobacter mustelae A_D3UIW2_HELM1' 'Denitrovibrio acetiphilus A_D4H0L7_DENA2' 'Kyrpidia tusciae A_D5WPS6_KYRT2' 'Desulfurivibrio alkaliphilus A_D6Z1S7_DESAT' 'Selaginella moellendorffii A_D8SPM7_SELML' 'Fibrobacter succinogenes A_D9S9G1_FIBSS' 'Loa loa A_E1FQ17_LOALO' 'Olsenella uli A_E1R0A0_OLSUV' 'Sediminispirochaeta smaragdinae A_E1R766_SPISS' 'Halobacteriovorax marinus A_E1WXL3_HALMS' 'Halanaerobium praevalens A_E3DLE0_HALPG' 'Acetoanaerobium sticklandii A_E3PY35_CLOSD' 'Thermaerobacter marianensis A_E6SK48_THEM7' 'Desulfurispirillum indicum A_E6W2U9_DESIS' 'Nitratifractor salsuginis A_E6WYS4_NITSE' 'Anaerolinea thermophila A_E8MXN6_ANATU' 'Desulfurobacterium thermolithotrophum A_F0S219_DESTD' 'Rubinisphaera brasiliensis A_F0SKF9_RUBBR' 'Syntrophobotulus glycolicus A_F0SZH7_SYNGF' 'Aureococcus anophagefferens A_F0XYJ7_AURAN' 'Dictyostelium purpureum A_F1A4W7_DICPU' 'Hippea maritima A_F2LY49_HIPMA' 'Salpingoeca rosetta A_F2U655_SALR5' 'Erysipelothrix rhusiopathiae A_F5WQQ0_ERYRF' 'Simkania negevensis A_F8L9Q2_SIMNZ' 'Spirochaeta thermophila A_G0GEW7_SPITZ' 'Megasphaera elsdenii A_G0VQN4_MEGEL' 'Latimeria chalumnae A_H3B1G7_LATCH' 'Spirochaeta africana A_H9UI14_SPIAZ' 'Ignavibacterium album A_I0AJP2_IGNAJ' 'Caldisericum exile A_I0GIN1_CALEA' 'Selenomonas ruminantium A_I0GPI3_SELRL' 'Caldilinea aerophila A_I0I9T4_CALAS' 'Phycisphaera mikurensis A_I0IFJ0_PHYMF' 'Leptospirillum ferrooxidans A_I0INV2_LEPFC' 'Brachypodium distachyon A_I1GV33_BRADI' 'Glycine max A_I1M325_SOYBN' 'Acetomicrobium mobile A_I4BVW5_ANAMD' 'Helicobacter cinaedi A_I7GZM0_9HELI' 'Arabidopsis thaliana A_IPT9_ARATH' 'Oryza brachyantha A_J3MHV5_ORYBR' 'Leptospirillum ferriphilum A_J9ZBZ4_LEPFM' 'Setaria italica A_K3Z677_SETIT' 'Solanum lycopersicum A_K4DCV4_SOLLC' 'Singulisphaera acidiphila A_L0DK24_SINAD' 'Thermodesulfobium narugense A_M1E931_9FIRM' 'Bdellovibrio exovorus A_M4VCJ3_9DELT' 'Ilumatobacter coccineus A_M5A3P6_9ACTN' 'Acidithiobacillus ferrooxidans A_MIAA_ACIF2' 'Akkermansia muciniphila A_MIAA_AKKM8' 'Anaplasma marginale A_MIAA_ANAMF' 'Aquifex aeolicus A_MIAA_AQUAE' 'Bacillus subtilis A_MIAA_BACSU' 'Borrelia burgdorferi A_MIAA_BORBU' 'Caldicellulosiruptor saccharolyticus A_MIAA_CALS8' 'Campylobacter jejuni A_MIAA_CAMJE' 'Chlorobium phaeobacteroides A_MIAA_CHLPD' 'Chlamydia trachomatis A_MIAA_CHLTR' 'Clavibacter michiganensis A_MIAA_CLAMS' 'Coprothermobacter proteolyticus A_MIAA_COPPD' 'Cytophaga hutchinsonii A_MIAA_CYTH3' 'Deinococcus radiodurans A_MIAA_DEIRA' 'Desulfovibrio desulfuricans A_MIAA_DESDA' 'Desulfococcus oleovorans A_MIAA_DESOH' 'Dictyoglomus turgidum A_MIAA_DICTD' 'Escherichia coli A_MIAA_ECOLI' 'Elusimicrobium minutum A_MIAA_ELUMP' 'Exiguobacterium sp. A_MIAA_EXISA' 'Finegoldia magna A_MIAA_FINM2' 'Francisella tularensis A_MIAA_FRATT' 'Fusobacterium nucleatum A_MIAA_FUSNN' 'Gloeobacter violaceus A_MIAA_GLOVI' 'Gramella forsetii A_MIAA_GRAFK' 'Helicobacter hepaticus A_MIAA_HELHP' 'Helicobacter pylori A_MIAA_HELPY' 'Kosmotoga olearia A_MIAA_KOSOT' 'Lactobacillus brevis A_MIAA_LACBA' 'Lactobacillus delbrueckii A_MIAA_LACDA' 'Lawsonia intracellularis A_MIAA_LAWIP' 'Leptospira biflexa A_MIAA_LEPBP' 'Leuconostoc mesenteroides A_MIAA_LEUMM' 'Magnetococcus marinus A_MIAA_MAGMM' 'Methylacidiphilum infernorum A_MIAA_METI4' 'Mycoplasma gallisepticum A_MIAA_MYCGA' 'Mycoplasma penetrans A_MIAA_MYCPE' 'Neorickettsia sennetsu A_MIAA_NEOSM' 'Novosphingobium aromaticivorans A_MIAA_NOVAD' 'Oligotropha carboxidovorans A_MIAA_OLICO' 'Onion yellows A_MIAA_ONYPE' 'Opitutus terrae A_MIAA_OPITP' 'Pediococcus pentosaceus A_MIAA_PEDPA' 'Pelagibacter ubique A_MIAA_PELUB' 'Cutibacterium acnes A_MIAA_PROAC' 'Psychrobacter sp. A_MIAA_PSYWF' 'Rhodopirellula baltica A_MIAA_RHOBA' 'Rhodospirillum centenum A_MIAA_RHOCS' 'Rickettsia prowazekii A_MIAA_RICPR' 'Salinibacter ruber A_MIAA_SALRD' 'Solibacter usitatus A_MIAA_SOLUE' 'Sorangium cellulosum A_MIAA_SORC5' 'Sulfurihydrogenibium sp. A_MIAA_SULSY' 'Synechococcus sp. A_MIAA_SYNR3' 'Thermus thermophilus A_MIAA_THET8' 'Treponema pallidum A_MIAA_TREPA' 'Tropheryma whipplei A_MIAA_TROWT' 'Uncultured termite A_MIAA_UNCTG' 'Wolinella succinogenes A_MIAA_WOLSU' 'Azobacteroides pseudotrichonymphae A_MIAA1_AZOPC' 'Geobacter lovleyi A_MIAA1_GEOLS' 'Hahella chejuensis A_MIAA1_HAHCH' 'Porphyromonas gingivalis A_MIAA1_PORGI' 'Treponema denticola A_MIAA1_TREDE' 'Clostridium sp. A_R5AGI8_9CLOT' 'Veillonella sp. A_R5BDP3_9FIRM' 'Firmicutes bacterium A_R5CWF9_9FIRM' 'Coprobacillus sp. A_R5G4C6_9FIRM' 'Brachyspira sp. A_R5LIJ0_9SPIR' 'Clostridium sp. A_R5SR97_9CLOT' 'Corallococcus sp. A_R5W500_9DELT' 'Clostridium sp. A_R5ZC67_9CLOT' 'Clostridium sp. A_R6AYV2_9CLOT' 'Clostridium sp. A_R6BSM0_9CLOT' 'Firmicutes bacterium A_R6H037_9FIRM' 'Clostridium sp. A_R6PD01_9CLOT' 'Faecalibacterium sp. A_R6PWF6_9FIRM' 'Staphylococcus sp. A_R6T832_9STAP' 'Firmicutes bacterium A_R6U1Z5_9FIRM' 'Ruminococcus sp. A_R6XCW7_9FIRM' 'Firmicutes bacterium A_R6XFU8_9FIRM' 'Clostridium sp. A_R6YL61_9CLOT' 'Coprobacillus sp. A_R7DRE5_9FIRM' 'Anaerotruncus sp. A_R7EUL2_9FIRM' 'Acidiphilium sp. A_R7G499_9PROT' 'Clostridium sp. A_R7GAX8_9CLOT' 'Faecalibacterium sp. A_R7I6W6_9FIRM' 'Subdoligranulum sp. A_R7K3Z0_9FIRM' 'Acidaminococcus sp. A_R7K9G6_9FIRM' 'Eubacterium sp. A_R7NNX5_9FIRM' 'Dialister sp. A_R7PQ45_9FIRM' 'uncultured Desulfofustis A_V4JJC2_9DELT' 'Candidatus Saccharibacteria A_V5RWN0_9BACT' 'Salinispira pacifica A_V5WKQ1_9SPIO' 'Candidatus Babela A_V6DF92_9DELT' 'Desulfurella acetivorans A_W0JLN2_DESAE' 'Amborella trichopoda A_W1Q0J5_AMBTC' 'Spiroplasma culicicola A_W6A7S4_9MOLU' 'Ralstonia solanacearum B_A4L735_RALSL' 'Rhodococcus fascians B_G8JYU5_RHOFA' 'Agrobacterium vitis B_IPT_AGRVS' 'Pantoea agglomerans B_IPT_PANAY' 'Pseudomonas savastanoi B_IPT_PSESS' 'Rhizobium radiobacter B_IPT_RHIRD' 'Agrobacterium tumefaciens B_IPTZ_AGRT7' 'Dichelobacter nodosus C_A5EW99_DICNV' 'Hamiltonella defensa C_C4K6T1_HAMD5' 'Staphylococcus aureus C_Q2FYB7_STAA8' 'Nostoc sp. C_Q8YK11_NOSS1' 'Lactococcus lactis C_Q9CI49_LACLA' 'Xylella fastidiosa C_Q9PG00_XYLFA' ; END; BEGIN CHARACTERS; TITLE IPPT_IPT_VirEdomain; DIMENSIONS NCHAR=93; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX 'Fimbriimonas ginsengisoli A_A0A068NZ43_9BACT' QVYRGLDIGTAKPEYLLLDGVGEYGRNVVVGTGLYVRALFAEKIDNRVRVQRSLERRVARRIETMMQGWVEEVRAIGYRTETRRYAKRQRTWL 'Paramecium tetraurelia A_A0CSW7_PARTE' QIYKNWPISSNWPKYELIGTITSYRDNAILGCCFFMNYLL---INDRYRIQKALRFKIYARCDEMIRGVIEEFTPLGYDEKSRQYAAYQRKYF 'Ostreococcus lucimarinus A_A4RZH4_OSTLU' QIYRGLDVGSGKVGHHMLSDANAYGRDAVVGAGMYLKWLTGKTLSDWYRLTRAYEIKIDARVEGMFVGIMDEARSIGYRQLNRAYAKRQFTWF 'Physcomitrella patens A_A9TW02_PHYPA' QVYKGMNVGSAKTPHHLLDSASRFGHVPIVGTCTYLHWYMAYSLCDWPRLRRALEGWIDLRCEQMIAGLLQEARGIGYQEVSRSLVKKQLRWF 'Monosiga brevicollis A_A9V2N5_MONBE' HIFRELQVGLDKVPCHFVDNAGDFGKTPIIDSVFYLKTLFAAVILDWARLLRCIVINLVARCERIVDGLVEETRLLGYQESHRRAAAQQLRYF 'Cloacimonas acidaminovorans A_B0VIL6_CLOAI' QVYCYLDIGTAKVTHHLIDNAGAFGKIPIIGTGLYIKALLAEKISDTQRILRGLEVRINQRIEKMLAGLLAEINCLGYKEHQRNYAKRQVTWY 'Cryptosporidium muris A_B6ADE9_CRYMR' QLYKGFDIGTGKVSHHLLDTVSRYDSIPIVGSHMYIKGLIAKQLHDRRRVSRSLEIYINLRVHNMVQGIFNEVQSIAYKEKTLQYSRKQRKYI 'Populus trichocarpa A_B9GGV0_POPTR' QVYRGLDVGSAKPTHHLLDSVGQFGRVPIVGTGLYLRWFIAQFLADWYRLRRSLEISIDYRCEDMVAGILTEARAIGYRQASRNFAKRQMTWF 'Ricinus communis A_B9SE49_RICCO' QVYRGLDVGSAKPSHHLIDSVGKFGRVPIVGTGLYLRWFVAQSLPDWYRLRRSLEISIDYRCEDMLSGILSEARAIGYRQASRNFAKRQMTWF 'Gemmatimonas aurantiaca A_C1A8L3_GEMAT' QIYREFDIGTAKPSHYGVSSAHRWGTPPVIGTGLYVRALVAHL--GRTQLLRAIETRIAARVHQMVAGFFDEVNACGYRAESRQYAKRQRTWF 'Micromonas commoda A_C1DZ11_MICCC' QVFEGLDVGASKLPHHLLDGAGEFGKTPIVGTGMYLRWLIANRLADWYRLERAMEIRVDARVEAMVRGMLEEARSIGYRQATRAFAKRQFTWF 'Micromonas pusilla A_C1N2S4_MICPC' QVYRGLDVGSGKLAHHALDNAGAFGKVPIVGTGMYLRWFVADRVADWYRVERALEIRIDDRVECMVCGMLDEASAIGYRQATRAFAKRQLTWF 'Anaerococcus prevotii A_C7RHL7_ANAPD' QVYRYMNIGTNKT-HFMLNSVDDFLRIPIVGTGFYIDSLISRRYHEVNRVIRALEIRINQRVLDMVNGLVDEVSAIGYKENTRHYAKRQITWM 'Thermobaculum terrenum A_D1CC00_THET1' QVYRYMDIGTAKPTHHCIDTLAQQHKVPFVGTGQYLKAIIAERILDLRRIIRALEVRIENRTKDMLRGLLEEIQSIGYGDHNHKLVRHQYVWF 'Acidaminococcus fermentans A_D2RKG8_ACIFV' LVFRHMDIATAKPTHHLVDSVVDFGKIPILGTGLYVKALLAGELKDRRRIIRAIETRINRRVDLMVEGLFAETKSIGYRQATRNFAKRQITWY 'Naegleria gruberi A_D2VRI7_NAEGR' QMYKECSIGSNKIKHHLVNTVQQFGKLPILGSAFYLNTFIASKIHDLYRLNRAYTISLERRCENLVEGLLEEVRSIGYKESTRRYSKHQNTWF 'Helicobacter mustelae A_D3UIW2_HELM1' SIYKHINILSAKPSHYGIDNAMLFKKILILGSSFYLKAICAARLKDPYRITKALEIKITLRTQKMLDGGIEEIRAIGPKEHTMQLAKRQQTFN 'Denitrovibrio acetiphilus A_D4H0L7_DENA2' QVYKYMDIGTAKADHHLIDSAGVFGNIPVVGTGMYVETLQAEKIKDRARIMRGLELRINRRVDLMINGWEKEVKAIGYRDRTRNFAKRQLTWF 'Kyrpidia tusciae A_D5WPS6_KYRT2' QIYRGMDIGTAKIPHHLIDTVVDYGRWAIVGTGLYVKSLTARRLHDVRRIIRALEIRINDRVIQMIKGWIQEVQAIGYKEGTRRYAKRQWSWF 'Desulfurivibrio alkaliphilus A_D6Z1S7_DESAT' QVYRYLDIGTAKATHHLIDSLARFGKAALLGTGLYLRGLRAGRIHDRQRLLRALEIRINRRVESMLAGLIDEVQAIGYRHDTRRYAKRQLTWF 'Selaginella moellendorffii A_D8SPM7_SELML' QVYRGLDVGSAKTPHHLLDTAGAFGQVPIVGTGLYLRWYLAKSLTDWYRLRRALSIAIDARCEEMLAGILAEARAIGYRQASRNYARRQLTWF 'Fibrobacter succinogenes A_D9S9G1_FIBSS' QIYKDFAIGTAQPSHHMVDSAGDFNQNYILGTGLYLQSLMMEKVENVQRIIRILEVRIDARVDQMMAGWLDEIQSLGYKEKTRNYAKRQLTWF 'Loa loa A_E1FQ17_LOALO' QIYKGLDIATNKVSHHMMSNVHQFGKLPVVGTGYYIEGILAMQVHNRFRVVRALQIRLNERIAKMIEGLRKEVQSIAIKEHTRQYSRRQRRWI 'Olsenella uli A_E1R0A0_OLSUV' QVYRGMDVGTAKTPLLMVDSAKLFGLPAVLGTGLYLNAVIAALIHNVRRVVRALELRIGRRVDAMFEGLVEEVQAIGYEERTRRYAKRQLSWF 'Sediminispirochaeta smaragdinae A_E1R766_SPISS' QVYRRFSIGTAKPDHYLIDSAGDFGHIPLMGTAFYFRSFMASQLHDLVRIQRSLEIRINQRVDLMFDGLEQEVKGIGYRENSRRYAKRQITFF 'Halobacteriovorax marinus A_E1WXL3_HALMS' -FYKELSIGTAKPSHHLVDNASDFNKIPIFGSAFYIRAFVFNQLHDHYRNIRAYEHIILKRTEEMVAGLVAEVGSIGYKESTRQLAKSQRTFF 'Halanaerobium praevalens A_E3DLE0_HALPG' QIYQKMDIGTAKASHHLIDSVSEFKKIPLLGTHLYLRALLAKKLHDLRRVIRAIEIRINQRVDLMLEGLVKEVQALGYKERSRHFAKRQLTWL 'Acetoanaerobium sticklandii A_E3PY35_CLOSD' QIYKQMDIGTAKITHHMIDTVADYGKVPIIGTGLYINSIVANSIHNTKRVIRALEIRINSRVDTMINGLVDEVKAIGYRQDSRRYAKRQFTWF 'Thermaerobacter marianensis A_E6SK48_THEM7' QVYRGLDIGTDKVDHHLIDSVAEFGRYPVLGTGYYVTALLAAAIHDRKRLVRALEIAIEERVDRQLAGLVEEVQALGYKENTRRYAKRQWTWF 'Desulfurispirillum indicum A_E6W2U9_DESIS' QVFRHLSIGTAKPDHHMLDHAHRYGVVPVLGTGLFYEALQAPKLKDTQRLIRWYEIRINQRVDTMLEGLIEEIPVVGYTENSRRYAKRQLTWF 'Nitratifractor salsuginis A_E6WYS4_NITSE' AIYKEIDIASAKPTHFGIDDVTRFSKPLILGSSFYLKALIAARISDRYRIEKSLLIRIALRTTQMLEGLIDEVKAIGIAENTARLAKRQSTFN 'Anaerolinea thermophila A_E8MXN6_ANATU' -FYRGMDIGTAKPTHHLIDSLALFGKLPILGTGQYVKAVIAQKIDNVRRTIRALEVRVDARIEQMLQGFLDEVSAIGYRQLTRRYVRQQGAWF 'Desulfurobacterium thermolithotrophum A_F0S219_DESTD' QVYKGLDIGTDKVSHYLIDSVAEFNKYPIVGTGFYIRALLAERIGDRKRLIRAYEVRIEDRVDSQIKGLIDETQALGYKERTKQFAKRQFTWF 'Rubinisphaera brasiliensis A_F0SKF9_RUBBR' AIYRRMDIGTAKPTHHLIDSTADFNKTPIFGTGLYLRSLLATRLHDQRRIVRALEVRINRRVDLMVEGLVAEVQGLGYKERTRQFAKRQHTWF 'Syntrophobotulus glycolicus A_F0SZH7_SYNGF' QVYQELDIGSAKPSHHLINTTAVFRKMPIIGTGLYIRSLTARRLHDTARVVRALEVRINLRCESMLEGLIQEVQSIGYRHDTRHFAKRQFTWF 'Aureococcus anophagefferens A_F0XYJ7_AURAN' QLYRGLDIGANKPSHHLVDSAGEWGGVPVVGTMMYARWLVAAALSDWYRLARAVEIGIDARCDAMLAGLLGEVRAIGYRQASRNYAAEQMKWY 'Dictyostelium purpureum A_F1A4W7_DICPU' QIYKNLSVGSNS-NFHLYNNVYNYGNTPIIGCGFYLDSILAKCISNVKRLTMSLYFMLNERCEAMVYGLLDEVKSLGYKEVTRQYSKRQDTWF 'Hippea maritima A_F2LY49_HIPMA' QIYRFMDIGSAKPSHYFIDSAGEFGKNSVIGTAFYLEALVSSKVNDCQRIKRGLSVRIALRVDKMIEGLIEEVKAIGYKENTLSFAKRQLTFL 'Salpingoeca rosetta A_F2U655_SALR5' QVYKGMDIGSDKVSHHLIDSSGDFGKTPLIGTWFYLNFLLAARIDDWYRLTRAMSVRINQRCEHIVDGIMEETKSIGYRQATRRLCAKQMRSF 'Erysipelothrix rhusiopathiae A_F5WQQ0_ERYRF' AVYKELNIGSAKPTHHLIDHVARFGKTPIIGTGLYINALLAENIHNRKRLIRSLQMRINKRVDIMMSGLLDEVQSIGYRENTRRLAKRQITWF 'Simkania negevensis A_F8L9Q2_SIMNZ' QVYRGMDIGTAKVSHHLIDNVMQFERTPIVGTGFYLHSLIANTINDRHKIIRALEIRIEMRCDEMIAGFIEEVQAIGYRQASRRYAKRQFTWF 'Spirochaeta thermophila A_G0GEW7_SPITZ' QVYRGMDIGTAKPSHHLIDTVGDFGKLPVVGTAYYLRHFLASRISDGYRISRALEVRIERRVWRMFEGLADEVRAIGYREHTRQFAKRQLTFF 'Megasphaera elsdenii A_G0VQN4_MEGEL' QIYRHMDIGTAKPTHYFIDSAARFGKVPIVGTGLYVQSLLDWHELNTHRLTRLVSARIEERVDAMIAGWVDEVKAIGYQERTRRFAKRQLTWF 'Latimeria chalumnae A_H3B1G7_LATCH' QIYKGLDIITNKVTHHMISTVVEFKKIPIVGTNYYIESLLAARLHDKRKVARSLQVRLDQRVDDMLDGLLDELQSIGFKEATKRYARKQNKWV 'Spirochaeta africana A_H9UI14_SPIAZ' QAYRGLDIGTAKPPYHLIDSAGRFGALPVIGSVFYVQTFLAARIPDTYRIMRALEIRINLRVERMFSGLPAEVRAIGYRENTRRLAKRQTTFL 'Ignavibacterium album A_I0AJP2_IGNAJ' QIFKHLSIGTAKPTHYFVDNADIFNKTPVVGSGLYIKALIAERVINWKRVIRAIEVNIEQRVDEMISGLVDEVNTVGYKENTRRYAKRQMTWF 'Caldisericum exile A_I0GIN1_CALEA' QFYKGMDIGTAKVPHHFVDSVSQYKKIPLIGSGLYIRAITANKVFDKKRLIRIIEYDIENRVDRMVEGLIDEVQAIGYKENTRHFAKRQITWF 'Selenomonas ruminantium A_I0GPI3_SELRL' LFYKGFDIGSAKPTHHLVDNVTDFGEIPIIGTGLYIKALLAAEIHNLRRVIRALEVRINQRVELMFAGLETEVQGIGYKESTRHFAKRQLTWY 'Caldilinea aerophila A_I0I9T4_CALAS' QIYRGMDIGTAKATHHLIDTVAEYGGTPLLGTALYIRAVVAARIDNPRRVLRALEIRIDRRVDAMLAGLIEETTSLGYREETHRYVRHQMTWF 'Phycisphaera mikurensis A_I0IFJ0_PHYMF' QVYRHLDAGTAKPTHHLVDTVRDWGRVPIVGTNLYVRALLADRIADRQRTVRGLEVRINARVKAMFEGLVEETEAIGTKQKTRRFAKQQRTWL 'Leptospirillum ferrooxidans A_I0INV2_LEPFC' QIYKHLDIGTGKPSHHLIDSAGMFGKKAVLGTGLYLRTVMASEIMDRVRITRALWIRISHRIRQMIGGWVSEVQSLGYPEKTRQYAKRQRTWF 'Brachypodium distachyon A_I1GV33_BRADI' QVYRSLDIGSAKPSHHLIDSAGMFGCVPVVGTGLYLRWFIAGDLHNWSRLRRRLEISIDLRCEEMLAGLLSEARAIGYRQTSRNFSKRQMTWF 'Glycine max A_I1M325_SOYBN' QVYRGLDVGSAKPSHHLVDSVGQFGRVPIVGTGLYLRWFIAQFLADWYRLRRSLEISIDYRCEDMLLGILSEAKAIGYRQASRNFAKRQLTWF 'Acetomicrobium mobile A_I4BVW5_ANAMD' QVYRYMDIGTDKVSHHLVDTAARFRKRPLLGTPFYYNALFALRIHDLTRIVRGLEVKIEQRARRQFEGLIDEVQGLGYREATKSLYRRQMTWF 'Helicobacter cinaedi A_I7GZM0_9HELI' -IYKGFDIASAKPTYHALDNAMLFDTPLLIGSSFFLKSIIAQKIADTYRIHKALSLDILKRSQKMIEGIVEEINAIGPKEHTCQLAKRQATFN 'Arabidopsis thaliana A_IPT9_ARATH' QVYKGLDVGSAKPSHHLIDSVGQFGRVPIVGTGLYLRWFMASSLPDWYRLRRSLEISIDFRCEDMLSGVLSEARAIGYRQASRNFAKRQMTWF 'Oryza brachyantha A_J3MHV5_ORYBR' QVYRSLDVGSAKPSHRLIDSAGDFGRVPIVGTGLYLRWYIARDLSNWSRLRRSLEISIDLRCEEMLAGLLSEACAIGYRQASRNFSKRQLTWF 'Leptospirillum ferriphilum A_J9ZBZ4_LEPFM' QIYRDMNIGTAKPPHHLLDSAGQFGKKVALGTGLYIKALLASVLSDRYRILRALWLRINDRVVRMFEGWMEEMRSLGYSEKTRQFAKRQITWF 'Setaria italica A_K3Z677_SETIT' QVYRGLDIGSAKPSHHLIDSAGSFGRVPVVGTGLYLRWYMVLDLSNWKRLSRRLEIALDLRCEEMLAGLLSEARAIGYKQTSRNFAKRQLTWF 'Solanum lycopersicum A_K4DCV4_SOLLC' QVYRGLDVGSAKPSHHLVDSVGQFGRVPIVGTGLYLRWFIAQSLPDWYRLRRRLEISIDFRCEDMLLGILSEARAIGYRQESRNFAKRQMTWF 'Singulisphaera acidiphila A_L0DK24_SINAD' TLYRGMDIGTAKPTHHLIDSVADFGKRALFGTALYLKALLARRLHDRLRIVRALEVRINLRVDLMIQGLVDEVQGVGYRERTRQFAKRQSTWF 'Thermodesulfobium narugense A_M1E931_9FIRM' QVYKYMDIGTAKPTHYLIDNAFIFSKIPLIGTALYLKGLIAKTISDKIRIVRALEVRINKRVDLMIQNLIDEVQTYGYKENTRNFAKRQMTWF 'Bdellovibrio exovorus A_M4VCJ3_9DELT' QFYKGLIVGAAAPSHFLYSTAGGYFRGPVFGTGFYIQALESSKIHDHFRLVRAIEIRVQMRTDKMIAGIIEETSSVGYRQGTMQLIKKQKTWF 'Ilumatobacter coccineus A_M5A3P6_9ACTN' QVYRGMDIGTAKPTHHCIDTVAEFDRRALLGTGLYHRVVIAAKMENRRRVVRALEVRVEQRVHRMIAGLVDEVQALGYKERTRQFAVRQERWF 'Acidithiobacillus ferrooxidans A_MIAA_ACIF2' LVYRHFDIGSAKPSHALVDSAGLFGRIPLLGTGLYFRALEAAGIADRQRIQRALEIRITQRFDVMLNGFLDEIRAVGYRQATRQLAKRQDTWF 'Akkermansia muciniphila A_MIAA_AKKM8' QVYRELPILTAAPSHHMVSNATEHGKIAIVGSGLYFKFLSAASTDNRRYVERNLEIRIAHRAARMMQGAVEETRTLGLALATRQYAKRQRTWL 'Anaplasma marginale A_MIAA_ANAMF' QIYQHVPTITDQAEFGLYGSVGLWKSPAIVGSGLYISSLIC-KIDNSNQLLRAFEVKINSRLVDMINSAVAEVKAIGVRENTRQYAKRQYTWL 'Aquifex aeolicus A_MIAA_AQUAE' AVYKFMDIGTAKP-HHLIDDAKIFGKVPIVGTYLYIQALLAKKIHDLRRIVRALEVRIENRVYDMVKGLLEEVQAIDYKENTKKQAKRQIRWF 'Bacillus subtilis A_MIAA_BACSU' QIYKGMDIGTAKITHHLIDSTADYGKLPMIGTGLYIQSVLAAAIHNTRRVIRALEIRINQRVDLMMQGLLPEVQAIGYKENSRRYAKRQLTWF 'Borrelia burgdorferi A_MIAA_BORBU' QVYKEFNIASSKPSHHLVDTIGIFKKIPIFGTAFYFKHLKFNMLNDIYRIKRSLEVRISIRINEMLNGLLSEIKGIGYNENSFLYAKRQMTFF 'Caldicellulosiruptor saccharolyticus A_MIAA_CALS8' CVYKYMDIGTAKPTHYVIDNVALFGKIPLLGTGFYIKSIVAQSVHNVKRVIRYLEIRIDARVEKMFKGLVDEVQGLGYKQRTKQFAKRQSIWF 'Campylobacter jejuni A_MIAA_CAMJE' CVYKEINIASAKPSYFGVNNVELFNLPLIIGTGFYLKTMI--KIEDTYRLKKWLGIRIKTRTKEMLDGLLDEANSIGLKEHTTQLAKRQRTFN 'Chlorobium phaeobacteroides A_MIAA_CHLPD' QIYRELNIGTAKPSHHFVNTAGNFGKNVLIGSTLYLEALLAATLDKTQRLVRSLEIKINRRTDQMLAGLLQEAQTVGYQEHTRNYAKRQLTFF 'Chlamydia trachomatis A_MIAA_CHLTR' QVYQGMDIGTAKVSHHLIDNAVDFNKVPILGTGFYFHTFLAATITDKNKIIRALEINILERCDQMLEGLLDEVRAIGYRENTWRYTKKQRTWF 'Clavibacter michiganensis A_MIAA_CLAMS' QLYRGMDIGTAKLPHHMLDTVAAYGAVPILGSGLYVSSVLAQRIGNGRRLVRALEVRLDARVSGMWRGLVDEVRAIGYAQLTRRYARRQVSWF 'Coprothermobacter proteolyticus A_MIAA_COPPD' -FYKAATIGTAKPPHWFIDSVGAFGVTPIVGTLFYYYALVEKNILDIRRLTRALEIRLRDRVEYMISGLIEEVNQIGYKESHWTYARKQIKWL 'Cytophaga hutchinsonii A_MIAA_CYTH3' QVFKELSIGTAKATHYFVDNAGMFHDVVIVGTGLYVKALLHAVIDNPLRVFRAIEVRIDRRMDRMLEGLEKEAQTVGYSENSRRYAKRQLTWF 'Deinococcus radiodurans A_MIAA_DEIRA' TVYRGLDLGTAKPTHHLLDDVAQYGRLPLVGTGFYLSALSAARMEP-RRVVRALEVRVQERTAAMLRGWPQEAQALGYAEATRQYGKRQLTWM 'Desulfovibrio desulfuricans A_MIAA_DESDA' QVYADFPRITAQPSHHLYGSAGRWGKIPLLGTGLYFQTLLATRIHDRQRIVRALEVRLARRLDMMLEGAMDEATGIGCAENTRAYAKRQLTWF 'Desulfococcus oleovorans A_MIAA_DESOH' QVYRYMDIGTAKPTHHMIDSAGRYGVLPVLGTGLYIKACLAERIHDRFRIVRALEVRINHRVDLMLAGFEKEVQSIGYRHDTRRYAKRQETWF 'Dictyoglomus turgidum A_MIAA_DICTD' QIYQGMDIGTAKPSHHLIDTVAEFRRFPLLGTPLYYKVLFASKIHDLKRIIRALEVILEERVDKMIEGLVDEVQGIGYKERTKEFVKRQYTWF 'Escherichia coli A_MIAA_ECOLI' LIYKGMDIGTAKPNHRLLDSAADFGRIPLLGTMLYFKALLAARIHDPQRLSRALEVRIEQRFHQMLAGFEAEVRCVGYRQATRQLAKRQITWL 'Elusimicrobium minutum A_MIAA_ELUMP' QVYKYLTVGTAKPEYHLVDNTGSFGKTAIFGTGMYMQSYFAALI-NLHRVMRALEIRIEIRTQGMF-GMLKETRSLGYAELTRQYAKRQRTWF 'Exiguobacterium sp. A_MIAA_EXISA' QVYRGMDIGSAKVTHHLIDSVAMFGKLPIIGTGLYIRSILAATIHNVRRVVRALEVRINQRVDAMMEGLVEEVRAIGYKEHTRQFAKRQLTWF 'Finegoldia magna A_MIAA_FINM2' QIYKYMDIGTAKVEHHLIDNVEQFNKIPIIGTGLYINSITADKIHNVRRVIRAIEVRINKRVDEMIDGFMAECQAIGYRENSRKYAKRQLTWF 'Francisella tularensis A_MIAA_FRATT' LVYKGMDIGTAKPTHHLIDSVADFGREVLLGTMLYFKGLIAQKINDQQRIFRALEVNIESRFRQMLDGFLDEVRSVGYRQATRQLAKRQLTWI 'Fusobacterium nucleatum A_MIAA_FUSNN' QVYRGLNIGTAKIRHHLIDSVGNFEKNFLLGTGLYLNSVTTKEIHNRVRLERVVEVRINKRVDIMFAGLVDEVNIIGYNENSRHYAKRQFTWF 'Gloeobacter violaceus A_MIAA_GLOVI' QVYREFDIGTAKPTHCLIDNVARYGKPALLGSGLYLRAVSAGRIHDQVRIERALEVRIEQRTHRMIEGWLEEVSTLGYAEHTRQFAKRQMTWF 'Gramella forsetii A_MIAA_GRAFK' QFFKEMKIGTAVPDHHFIQSVGDFHKVAVMGSGLYIKAITYKTADNPHRLIRALEIRINKRVDLMIRGLIEEANTVGYKENTRRFAKRQLTWF 'Helicobacter hepaticus A_MIAA_HELHP' SIYKYLDIASAKPTYYALNNVMIFHTPLLIGSSFFLKSIMAQSLSDTYRICKALALRIAKRTKAMIQGIVEEVNAIGAKEHTCQLAKRQRTFN 'Helicobacter pylori A_MIAA_HELPY' SIYKDINIASAKPSHYALDNAPLFKEILLIGSSFYLKSILAFKIHDTYRTHKALEINIKRRTKNMLHGLVEEIKAIGVKENTMKLAKRQNTFN 'Kosmotoga olearia A_MIAA_KOSOT' QIYRYMDIGTAKPTHHVIDNVFEYGRIPVFGSGLYAETLMYEKIHDLKRTIRYLEVRIENRVDKMVEGLIEEVQTIGYAENTRRFARRQIIWF 'Lactobacillus brevis A_MIAA_LACBA' QVYRHLDIGTAKATHHLIDTVAQFGHLPIVGTGFYLQALFASKIPNIRRTVRALEVRINQRVDNMVQGLLDEVSGIGYREDSRHYAKRQLTWF 'Lactobacillus delbrueckii A_MIAA_LACDA' QIYKEVAIGTAKASHYLVDSVKNFGKLPIIGTGFYVNALLAKKIPNSRRSLRALSVRINQRVDLMMEGLLEEAQAIGYKEASRRYAKRQLTYF 'Lawsonia intracellularis A_MIAA_LAWIP' QLYKGVPIITAQPTHKLYASAGRWTKIPLLGTGLYLRALFANSIHDRQRVLRALTVLLEKRIDKMFVGAIKEVSGIGYMENTRSYAKRQLTWF 'Leptospira biflexa A_MIAA_LEPBP' QVYRDLPVGTTAPTHWLIGNANQFGKIPFLGTGFYLRAFLMESLSDGYRIKRALEVRINTRVETIIRGMLEETRTLGYNFSHRNYAKRQITWF 'Leuconostoc mesenteroides A_MIAA_LEUMM' QIYRNLDVGTAKVTHHLIDSVGDFGKLPIIGTGLYVKALLAQKVDNKQRVIRAIQIRINHRVTQMVQGVLKEAKAIGYKEDSRRYAKRQLTYL 'Magnetococcus marinus A_MIAA_MAGMM' QVYRGMDIGSAKPTHHLIDSAGRFGVIPALGTGFYFRAVEAARVEDRQRIVRGLSVRINQRFEQMLKGFMEEVRAVGYRADSRRYAKRQITWL 'Methylacidiphilum infernorum A_MIAA_METI4' QVYRKLDIGTAKPSYGGIDNAFLFNRRGVLGCGLYFRAMTVAWVDNPRRIIRAIEVRLRRRIKKMFEGWEEETKAIGYKLQQHGYAKRQKTWF 'Mycoplasma gallisepticum A_MIAA_MYCGA' QVYKELNAGVNKPSYHFISSIAHFDWT-IVGSHLYVNSLIAIKIGNRKRLLRALYLYLSKRLDEMIHNWTKEIKALGYKEKFKRLVKHQLTWT 'Mycoplasma penetrans A_MIAA_MYCPE' QVYKEISKGINKPEHHFVNHIKRFDKNFILGSNLYIDCLISLKISNKKRLIQALRIKINDRADKMFKNWREEVKALGYDEKTRNYAKRQETWI 'Neorickettsia sennetsu A_MIAA_NEOSM' QVYRELPILTSQ--GMLYGSVASWKGIPLIGTPMYLYSLLLSRF-DSYKMLRDVAYKINERFLEAVNGAIDEVTICGFRESIRNYAKRQLTWF 'Novosphingobium aromaticivorans A_MIAA_NOVAD' QVYADLRVLSARPSHVLFGSAADWGALPILGTGLYIRTLLARKLADAQRITRALEVRCDLRFELMWDGALEEVRAIGVPEATRNYAKRQYTWL 'Oligotropha carboxidovorans A_MIAA_OLICO' QVYRDLRVLTARPTHRLYGSAGAWGRLPIFGTGLYFKALTAARLKDRVRIARALEVRIDRRFEVMAAGALAEAKAHGVPADTRHYAKRQFTWF 'Onion yellows A_MIAA_ONYPE' QMYQKYDIGTAKITHHLLDSIYHFTPLPLFGSGLYLKSALIANLDNPRRILSAYQDRVILRLEQMLKGFIEEVNIIGYREKTMQYAKRQKTWF 'Opitutus terrae A_MIAA_OPITP' -FYRGMDIGTAKPTHHLVDNIAGYGREALVGSGFYLKAFFLGALDNPRRVVRALERRIAARVAAMLAGLVDEVRAIGYRENTRALVKKQRTWF 'Pediococcus pentosaceus A_MIAA_PEDPA' QVYQKLDIGTAKVTHHLIDSAADFGKLPIVGTGFYLQALLYENIDNRRRIIRAIEVRINHRVNMMLDGLENEAKGIGYREDSRHYAKRQLTWF 'Pelagibacter ubique A_MIAA_PELUB' QVYKKLKILTARPNHHLYGSTGQWKKIPILGTGLYFQSLIKDKFDDTQRSIRAYEIKINLRTSSMLNGAISEVKVIGIAEKTRQYAKRQATWA 'Cutibacterium acnes A_MIAA_PROAC' VVYRGMDIGTATPTHHLVSSLVLMGVIPVLGSALYTKAIIAESILNGRRIVRALEVRIADRVDQMWAGFVDEVRALGYRQGTRRFARKQLMWY 'Psychrobacter sp. A_MIAA_PSYWF' LIYKDMNIGTAKPTHHLVDSVANFGKTPLLGTLMYYMALFAERLPDTQRITRAIEVRIALRLEMMWAGFFDEVRCVGYRQATRQLAKRQYTWL 'Rhodopirellula baltica A_MIAA_RHOBA' AVYRGMDIGSAKPTHHLIDSVAEYSKRPMFGTPMYLKGVLAAKIDDSRRMIRALEFRIEKRVEEMFAGLVAEVQAVGYREHTRRLARRQETWL 'Rhodospirillum centenum A_MIAA_RHOCS' QLYDGLRVLTARPSHRLYGSAARWGRVPVVGTGLYLRALAAARLHDTTRVLRAWEVACDARFLRMLEGALEEVKALGVPEATRNYAKRQLTWF 'Rickettsia prowazekii A_MIAA_RICPR' QVYKEIPIITASPIYHLYNSVIKYGKLPILGTGLYINLLVSTKINDTQRLIRAYEVTCDERLDKIFKKAIDEIKAVGIKERTRQYAKRQVTWF 'Salinibacter ruber A_MIAA_SALRD' QVYEELTIGTAKPSHHFIGSAGAYGRRPLVGATLYLHALQAAETDKTQKVIRALEVRINQRVDRMLDGLLDEVSTIGYRENTRRYAKRQLTWF 'Solibacter usitatus A_MIAA_SOLUE' QVYRHFDIGTAKLPHHLIDTAGEYGRLPILGTGFYLRALLAAKIHDVPKVTRALEVRLDARCAWMFEGLVDEVESHGYKQNTRNYAKRQITWF 'Sorangium cellulosum A_MIAA_SORC5' QIYREFDLGSGKPTHHLVDDAQRFGRVPVVGTFLWVKALVAARLADLVRVSRALEIRIEARVAGWLEGWVDEVGSVGYRQATRTFVRRQRTWL 'Sulfurihydrogenibium sp. A_MIAA_SULSY' MVYKYMDIGTAKPSHYVIDSVKDYGKIPIVGTWLYIQGALANKIHDKRRIVRALEVRIEIRVEKMFEGLVEEVQAIGYKENTKDFAKRQIRTF 'Synechococcus sp. A_MIAA_SYNR3' QLYAGMDIGTAKPTHELLNNLQQFGRPALLGSGLYLQALSAAKIEDPVRTQRALEVRIEQRTASLYAGLVAETQTIGYGERTWLFAKRQRTWF 'Thermus thermophilus A_MIAA_THET8' MVYRGLDIGTDKPTHHLVDSVARFGKLPLVGTGYYIRALSARRVGP-RRLVRALEVRLEERAKAQFAGLVEEVQAIGYKEAVKAYAKRQYTWF 'Treponema pallidum A_MIAA_TREPA' QVYRGLDVGTGKDLYHLIDNVFRFHKVPIIGTGLYLDAVLHNKTDDPARLMRAIEIRIRARLEQRIRGLIEEVFGLEYRFAISRFAKRQETWF 'Tropheryma whipplei A_MIAA_TROWT' QLYRDMDIGTAKLSHHQIDSVARYNSIPFLGSGLYVSSVVVSRG-NRRRIIRALEVRLQKRVESFYDGLIDEVKAIGYKQETIRLANKQIKWF 'Uncultured termite A_MIAA_UNCTG' QIYKYLDTGTNKEGQHLTDSAAKFGKVPVVGTGLYIKALLAEK-NNPQRLLRALEVKTNERCKYMIEGMIEETSGIGYRHDTRHYAKRQNTWF 'Wolinella succinogenes A_MIAA_WOLSU' SIYQEINIASAKPSHFGIDNAALFKKALLLGTGFFLKRIITSRITDLHRLRRGWEIRITERTEQMLEGLIDEVKSIGIAEHTAQLAKRQTTFN 'Azobacteroides pseudotrichonymphae A_MIAA1_AZOPC' QVYRNMTIGTGKDLYHLIDNVFRFGKLPILGTGLYIESVLHNQTDSVRKIIRAIEIRISLRLKKRLEGMIEEVYGLEYKYAIHQYAKRQMTWF 'Geobacter lovleyi A_MIAA1_GEOLS' TVYRGLDIGSAKPTHHLLDTAADFGKRPILGTGLYLRALLSQRLHNRNRIIRALEVRIDDRVDAMLAGLVAEVQAIGYKENTRHFAKRQLTWF 'Hahella chejuensis A_MIAA1_HAHCH' QVFRGMDIGTGKDLYHLIDSLFDYEKRPIIGSGLYLDAILHNTTDDRERTLRAIEIRIRERLETRLDGLIEEVLGLEYRYAIYLFARQQVKWF 'Porphyromonas gingivalis A_MIAA1_PORGI' QIFRELPIGTAAPTHLFVGSAGMYYRGVLLGSMMYIDAVCYAKVDNYKRVIHGLEIRIDARVLEMMEGLEEEANTVGYKENSRVYARKQMTWF 'Treponema denticola A_MIAA1_TREDE' QVYKHMHIGSASPSHHLIASAADFGKLPVLGTAFFLKNFLAERLHDEYRIIRAHEVRIEKRVDAMFAGLYDEVKAIGYRENTKHYAKRQETFF 'Clostridium sp. A_R5AGI8_9CLOT' QVYREMDIGSAKPSHHMIDSVAKYGKLPIIGSGLYIAAITFARLHDAKRIVRALEVRINRRVDNMFAGLLDEAQSIGYRQETRRFAKRQMTWF 'Veillonella sp. A_R5BDP3_9FIRM' QIYKGLDIGTAKPSHRLIDSAADFGHMPILGTGFYVQSLLGIELRDKHRLFRAIELRINLRVNIMVEGLFEEVKGIGYKENTRRFAKRQITWY 'Firmicutes bacterium A_R5CWF9_9FIRM' QVYRHMDIGTAKVTHYMIDSAARYGKLPIIGTNLYIDSLIAAKLHDRRRIVRAIEVRIDKRVDIMVLGLFDEVQAIGYKEESRRYAKRQLTWL 'Coprobacillus sp. A_R5G4C6_9FIRM' -MKRKLNIGTAKIDHHLIDSCADFGKVPFIGTGLYASCAISKKLHNRIRVIRAIECRINKRVLNMIEGLIDEVPDLGYCQETRHYAKRQISWF 'Brachyspira sp. A_R5LIJ0_9SPIR' QVYKYMDIGSAKPSYKMIDNIKDYDKAPIFGTGFYIDSIKAEIIDNSRRVIRALEVNINKRVDLMFDGLLKEVQAIGYKERTRNFAKRQLTWF 'Clostridium sp. A_R5SR97_9CLOT' QIYRGLDVGTAKVSHHLVDSVADFNKIPILGTGLYINSVVAKKIHNLRRVIRALEIRINSRVDLMLEKMLEEAQAIGYKEATRNYAKRQITWF 'Corallococcus sp. A_R5W500_9DELT' QIYCGMDIGTAKIKHYMLDSAFEF---PIVGTGFYFDSLLYNSIDNPVRVLRALEIKINERVDLMVQGLVQEVSAIGYKENTRHYAKRQQTYF 'Clostridium sp. A_R5ZC67_9CLOT' -VYQGFDIGSAKSTNYFIDTVFEFNVDGVIGTFLYTKALLLNLIDNPRRVERAYDLKIKERVLIQVKGLFEEERGIGFKEDTIQYARRQRTFL 'Clostridium sp. A_R6AYV2_9CLOT' QIYRGLDIGSAKPSHHLIDNVAMFGKNALVGTGLYINALTAQRLHDRKRIIRAIEIRIERRVDLMIEGLIDEVQGLGYKQDTRRFAKRQISWF 'Clostridium sp. A_R6BSM0_9CLOT' QIYKHLTVGTAKPLHHLIDSVADYGHLPVLGTGLYISSLVAQKIHNVGRVVRALEVRINLRVTRMVEGLEQEAQAIGYKEESRRYAKRQLTWF 'Firmicutes bacterium A_R6H037_9FIRM' QIYRGMDIGTGKITHHMLDSVGQYGKLPIIGTGLYINSLMAQKIMDVKRAIRAYEIRINARVDDMLNGLIDEVQAIGYKEGSRNYAKRQMTFF 'Clostridium sp. A_R6PD01_9CLOT' QIYKEFDIATAKPSHHLMDTVADFDKIPVVGTGLYFRILLAKNMHNTVKIIRALEVRTDRRVDVMLEGLEQEAKTIGYQENTRRYAKRQLTWF 'Faecalibacterium sp. A_R6PWF6_9FIRM' QIYKGLDVGTAKVTHHGVDSVADFNTLPILGTGLYVQSFLAAAIHNQVRVLRALEHRIDLRVDKMMEGLLPEAQAIGYKEASRNYAKRQLTWF 'Staphylococcus sp. A_R6T832_9STAP' QVYRKMNIGTAKPTHHLIDSISDYNKVPLLGSGLYIDAVIASKIHNRKRLIRAIELRINNRVDQMIKGLVEEVVAIGYKENSRHYAKRQYTWF 'Firmicutes bacterium A_R6U1Z5_9FIRM' QIYRGMDIGTAKPTHHLIDSCADYGKIPVFGTGLYLDSVIAEKTHNVKRVVRALEIRIGQRIGVMLEGLVDEVQAIGYKENTRNYAKRQLTWF 'Ruminococcus sp. A_R6XCW7_9FIRM' QVYRRMDIGTAKPTHHLIDSAADFGRLPFVGTGMYSEMLFAEKVHNVKRVVRYLEIRIDRRVDIMMEGLAAEAQAIGYKEHSRNYAKRQKTYF 'Firmicutes bacterium A_R6XFU8_9FIRM' QVYKEFELGTACPRHHFFKDVKKYGQDVILGTFLYVRAALAATLHNSRRVKRAL-INIVLRCDKMFEGLIEEVMAIGYKEHTRQYAKRQRTFL 'Clostridium sp. A_R6YL61_9CLOT' QVYKKIDIASAKVTHHLFDTVYDYNKNVIIGTGLYIKALL--MVDNNRRLIRELINRINKRVDIMLKGLEDEA-VIGYKENSRHYAKRQYTWF 'Coprobacillus sp. A_R7DRE5_9FIRM' QIYQEFDIGTAKPTHHLFDSPKEYNHLPIIGSGNYQKATLCKKIHNRKRVLRALMTKIDERVIEMIHGLEKEA-AIGYKEHSRNYAKRQMTYF 'Anaerotruncus sp. A_R7EUL2_9FIRM' QIYRGMDIGTAKPTHRMFDSCADYGRLPVLGTGLYLDSLLAAAIHNVRRVIRAIEIRIARRVDIMLAGLEDEVQAIGYKEATCRYAKRQMTWF 'Acidiphilium sp. A_R7G499_9PROT' AIYKNLNIGSAKPDHYMINSVSDYDKLPIIGTGFYVNSLIAKKLHDLVRVIRAIEIRINSRVDNMLKGLVNEVQGIGYKENSRRYAKRQITFF 'Clostridium sp. A_R7GAX8_9CLOT' AVYKKLDIGSAKPTHYLIDDVMTFKKPMIIGTGLYIKSVLTARIHNRKRVLRAIEIRINDRVDEMFAGLLYEV-AIGYKENSRHLAKRQMTWF 'Faecalibacterium sp. A_R7I6W6_9FIRM' QIYRGMDIGTAKPTHHMVDSVARYGHRALLGTGLYLRALRAQRLHDVRRVIRALEVRIEQRIDQMLAGLAEEVKAIGYKENTRHYAKRQLTWM 'Subdoligranulum sp. A_R7K3Z0_9FIRM' QIYIGMDIGTAKPDHHLIDNAFTFFKQPLIGTGLYFETLFAKNVHNVKGVIRALEISINRRVDIMVEGLFDEVTAIGYKEHTRNYAKRQVTYF 'Acidaminococcus sp. A_R7K9G6_9FIRM' QIYKGLNIGTAKESHYLIDSVAQFGKIPFVGTGLYVESLLAKKLSDTKRVIRALEIRINKRVDNMIFGLVQEAQAIGYKENTRNYAKRQLTWF 'Eubacterium sp. A_R7NNX5_9FIRM' QIYKYMDIGTAKPTHYMMDSVADYNKLPILGTGLYVDSLLYDKLSNHKRIARALEVRINQRVDIMVQGVLEEAKAIGYKENTRRYAKRQLTWF 'Dialister sp. A_R7PQ45_9FIRM' QVYQGMDIGTAKVSHYLVDSAAMFGRIPFIGTGLYIEGLLTIKEIDKQRLIRSLELRINLRVEHMFEGLEQEVKGIGYKENTRHFAKRQLTWF 'uncultured Desulfofustis A_V4JJC2_9DELT' QVYRHMDIGTAKATHHLIDHAASFGALPILGTGLYLRAIRAESIHDTSRIIRALEIRINQRTSKMMEGLEDEVQALGYRHDTRHYAKRQFTWF 'Candidatus Saccharibacteria A_V5RWN0_9BACT' AIYKGMDIGTAKPTHWGIDTASDFGRVPLLGTGLYIDGVVNLPENNKRYVIRTIERRLQLRSEHLFDGVVDEATGNIYPLLDYQLAKRQMTWF 'Salinispira pacifica A_V5WKQ1_9SPIO' QVYRGMDIGTAKADHHLLDNLADFGAVPVIGTAFYFKHLWADRIHDSYRIIRALEVRINLRVENMFKGLESELKAIGYREASRRYAKRQLTFF 'Candidatus Babela A_V6DF92_9DELT' QFYKPLSIGTAKPDYYLFDTASEFNILPIIGSSFYVKSI-AQEIHDRYRIERALYLIINQRTYKMFDGWLEEVKLIGYPEKTRAYAKRQLIFW 'Desulfurella acetivorans A_W0JLN2_DESAE' QIYKYFDIGSAKPPHHLIDSAQEFKKVPILGTLFYFDALIAQKINDKQRINRALSVRIIKRTINIAN-LIIETQSIGYRQETKQYAKRQKTFF 'Amborella trichopoda A_W1Q0J5_AMBTC' QVYQGLDVGSAKPSHHLLDSVGQFGYVPIVGTGLYLRWYIACYLPDWYRLRRSLEILIDLRCEEMLKGILFEARAIGYRQASRNFAKRQMTWF 'Spiroplasma culicicola A_W6A7S4_9MOLU' QIFKGTDIATNKIKHHLISSVADYDKTPIVGTGLYINALIANEIHNRNKIIRALEIRINERVLQLTDGLFDEIKCIGGPENNRRYARRQMTWF 'Ralstonia solanacearum B_A4L735_RALSL' QCCHELAVGSGRPLREYLCPAADAERALILGSVSLINAMI-----LGEWALRRIVLQAIKRVRDMLESILDELDVDGYRQEYWEHALWQEQEF 'Rhodococcus fascians B_G8JYU5_RHOFA' QCYSDLLVTSGRAFRVWLDDPDEAGEAVVMGSISLILRFA-----PFPAVVNVMPIQQCARARQMLRNLLTELSVAGLDCRYVEHGVLQQEIF 'Agrobacterium vitis B_IPT_AGRVS' QCYSQLSVGGGRPSRIYLISAERAEGGVILGSISLFKRMA-----GFTWHVTRLHLAAKKRINQMMQSFLGELGICGYRYEYLCYARQQEQEL 'Pantoea agglomerans B_IPT_PANAY' QGYHEISTGSGAPTRIYITTAKDYKSDFIIGSVSLLKEMV-----DFLWEIKIFRARAKRRITDMLHSIMDEVDIDGYRTEYYAHALWQEQET 'Pseudomonas savastanoi B_IPT_PSESS' QCCFDIATGSGRPHRIYLDSAEEASGGVILGSISLLKLIS-----RFIWSQHRMRLKAKARVRRMLVGLLDELDIDGYRYEYYEHAKWQERDF 'Rhizobium radiobacter B_IPT_RHIRD' QCCPQLSTGSGRPTRLYLDTAKQAKGGLILGSISLLRCMA-----DFRWHIIRNELVAKTRVKQMLRSIIQELGIDGYRYEFLIHARRQEQKF 'Agrobacterium tumefaciens B_IPTZ_AGRT7' QCCPQIATGSGRPLRIYLDDAESAEDGLILGSISLLNCMA-----GFQWHVKRLRLRAKQRVAEMFASLLEELDIDGYRCEYLEHALSQERDF 'Dichelobacter nodosus C_A5EW99_DICNV' Y----------QP-FDHVI---------VLGKSSFLRIL------ELQGFS-KAEIRTEDRAR---MQSFPRRDATGNRRHYK---------- 'Hamiltonella defensa C_C4K6T1_HAMD5' L----------KP-ADMVP---------ILGKSSGVAAL------ELRGLN-TKELRTHEKWI---PTQFPRRDKTGNRRVFNE--------- 'Staphylococcus aureus C_Q2FYB7_STAA8' M----------EP-FDYML---------TLGKSALLKKL------ELAATR-KAEVKQVDRFR---VEDFPRQDETGGRR------------- 'Nostoc sp. C_Q8YK11_NOSS1' F----------EP-HDEIT---------ILLKSTFWEILA-----EFENSYKKKDVRKKDSMR---REDFPRPDPTGERRAYRN--------- 'Lactococcus lactis C_Q9CI49_LACLA' Y----------RP-FDFVL---------DLGKTTFLTKM------EMAISN-KIPFQTVLSFR---AENYAKNDRTGARRYYKE--------- 'Xylella fastidiosa C_Q9PG00_XYLFA' LW-----VDRNNPSVDFML---------VLHKSTSLSELF-----EMDSFG-KADVRRTDKFR---ASSYRREDATGGRRLFLD--------- ; END; BEGIN TREES; Title IPPT_IPT_VirEdomain; ID 0164c268b8914; LINK Taxa = Taxa; TRANSLATE [0] 1 'Fimbriimonas ginsengisoli A_A0A068NZ43_9BACT', [1] 2 'Paramecium tetraurelia A_A0CSW7_PARTE', [2] 3 'Ostreococcus lucimarinus A_A4RZH4_OSTLU', [3] 4 'Physcomitrella patens A_A9TW02_PHYPA', [4] 5 'Monosiga brevicollis A_A9V2N5_MONBE', [5] 6 'Cloacimonas acidaminovorans A_B0VIL6_CLOAI', [6] 7 'Cryptosporidium muris A_B6ADE9_CRYMR', [7] 8 'Populus trichocarpa A_B9GGV0_POPTR', [8] 9 'Ricinus communis A_B9SE49_RICCO', [9] 10 'Gemmatimonas aurantiaca A_C1A8L3_GEMAT', [10] 11 'Micromonas commoda A_C1DZ11_MICCC', [11] 12 'Micromonas pusilla A_C1N2S4_MICPC', [12] 13 'Anaerococcus prevotii A_C7RHL7_ANAPD', [13] 14 'Thermobaculum terrenum A_D1CC00_THET1', [14] 15 'Acidaminococcus fermentans A_D2RKG8_ACIFV', [15] 16 'Naegleria gruberi A_D2VRI7_NAEGR', [16] 17 'Helicobacter mustelae A_D3UIW2_HELM1', [17] 18 'Denitrovibrio acetiphilus A_D4H0L7_DENA2', [18] 19 'Kyrpidia tusciae A_D5WPS6_KYRT2', [19] 20 'Desulfurivibrio alkaliphilus A_D6Z1S7_DESAT', [20] 21 'Selaginella moellendorffii A_D8SPM7_SELML', [21] 22 'Fibrobacter succinogenes A_D9S9G1_FIBSS', [22] 23 'Loa loa A_E1FQ17_LOALO', [23] 24 'Olsenella uli A_E1R0A0_OLSUV', [24] 25 'Sediminispirochaeta smaragdinae A_E1R766_SPISS', [25] 26 'Halobacteriovorax marinus A_E1WXL3_HALMS', [26] 27 'Halanaerobium praevalens A_E3DLE0_HALPG', [27] 28 'Acetoanaerobium sticklandii A_E3PY35_CLOSD', [28] 29 'Thermaerobacter marianensis A_E6SK48_THEM7', [29] 30 'Desulfurispirillum indicum A_E6W2U9_DESIS', [30] 31 'Nitratifractor salsuginis A_E6WYS4_NITSE', [31] 32 'Anaerolinea thermophila A_E8MXN6_ANATU', [32] 33 'Desulfurobacterium thermolithotrophum A_F0S219_DESTD', [33] 34 'Rubinisphaera brasiliensis A_F0SKF9_RUBBR', [34] 35 'Syntrophobotulus glycolicus A_F0SZH7_SYNGF', [35] 36 'Aureococcus anophagefferens A_F0XYJ7_AURAN', [36] 37 'Dictyostelium purpureum A_F1A4W7_DICPU', [37] 38 'Hippea maritima A_F2LY49_HIPMA', [38] 39 'Salpingoeca rosetta A_F2U655_SALR5', [39] 40 'Erysipelothrix rhusiopathiae A_F5WQQ0_ERYRF', [40] 41 'Simkania negevensis A_F8L9Q2_SIMNZ', [41] 42 'Spirochaeta thermophila A_G0GEW7_SPITZ', [42] 43 'Megasphaera elsdenii A_G0VQN4_MEGEL', [43] 44 'Latimeria chalumnae A_H3B1G7_LATCH', [44] 45 'Spirochaeta africana A_H9UI14_SPIAZ', [45] 46 'Ignavibacterium album A_I0AJP2_IGNAJ', [46] 47 'Caldisericum exile A_I0GIN1_CALEA', [47] 48 'Selenomonas ruminantium A_I0GPI3_SELRL', [48] 49 'Caldilinea aerophila A_I0I9T4_CALAS', [49] 50 'Phycisphaera mikurensis A_I0IFJ0_PHYMF', [50] 51 'Leptospirillum ferrooxidans A_I0INV2_LEPFC', [51] 52 'Brachypodium distachyon A_I1GV33_BRADI', [52] 53 'Glycine max A_I1M325_SOYBN', [53] 54 'Acetomicrobium mobile A_I4BVW5_ANAMD', [54] 55 'Helicobacter cinaedi A_I7GZM0_9HELI', [55] 56 'Arabidopsis thaliana A_IPT9_ARATH', [56] 57 'Oryza brachyantha A_J3MHV5_ORYBR', [57] 58 'Leptospirillum ferriphilum A_J9ZBZ4_LEPFM', [58] 59 'Setaria italica A_K3Z677_SETIT', [59] 60 'Solanum lycopersicum A_K4DCV4_SOLLC', [60] 61 'Singulisphaera acidiphila A_L0DK24_SINAD', [61] 62 'Thermodesulfobium narugense A_M1E931_9FIRM', [62] 63 'Bdellovibrio exovorus A_M4VCJ3_9DELT', [63] 64 'Ilumatobacter coccineus A_M5A3P6_9ACTN', [64] 65 'Acidithiobacillus ferrooxidans A_MIAA_ACIF2', [65] 66 'Akkermansia muciniphila A_MIAA_AKKM8', [66] 67 'Anaplasma marginale A_MIAA_ANAMF', [67] 68 'Aquifex aeolicus A_MIAA_AQUAE', [68] 69 'Bacillus subtilis A_MIAA_BACSU', [69] 70 'Borrelia burgdorferi A_MIAA_BORBU', [70] 71 'Caldicellulosiruptor saccharolyticus A_MIAA_CALS8', [71] 72 'Campylobacter jejuni A_MIAA_CAMJE', [72] 73 'Chlorobium phaeobacteroides A_MIAA_CHLPD', [73] 74 'Chlamydia trachomatis A_MIAA_CHLTR', [74] 75 'Clavibacter michiganensis A_MIAA_CLAMS', [75] 76 'Coprothermobacter proteolyticus A_MIAA_COPPD', [76] 77 'Cytophaga hutchinsonii A_MIAA_CYTH3', [77] 78 'Deinococcus radiodurans A_MIAA_DEIRA', [78] 79 'Desulfovibrio desulfuricans A_MIAA_DESDA', [79] 80 'Desulfococcus oleovorans A_MIAA_DESOH', [80] 81 'Dictyoglomus turgidum A_MIAA_DICTD', [81] 82 'Escherichia coli A_MIAA_ECOLI', [82] 83 'Elusimicrobium minutum A_MIAA_ELUMP', [83] 84 'Exiguobacterium sp. A_MIAA_EXISA', [84] 85 'Finegoldia magna A_MIAA_FINM2', [85] 86 'Francisella tularensis A_MIAA_FRATT', [86] 87 'Fusobacterium nucleatum A_MIAA_FUSNN', [87] 88 'Gloeobacter violaceus A_MIAA_GLOVI', [88] 89 'Gramella forsetii A_MIAA_GRAFK', [89] 90 'Helicobacter hepaticus A_MIAA_HELHP', [90] 91 'Helicobacter pylori A_MIAA_HELPY', [91] 92 'Kosmotoga olearia A_MIAA_KOSOT', [92] 93 'Lactobacillus brevis A_MIAA_LACBA', [93] 94 'Lactobacillus delbrueckii A_MIAA_LACDA', [94] 95 'Lawsonia intracellularis A_MIAA_LAWIP', [95] 96 'Leptospira biflexa A_MIAA_LEPBP', [96] 97 'Leuconostoc mesenteroides A_MIAA_LEUMM', [97] 98 'Magnetococcus marinus A_MIAA_MAGMM', [98] 99 'Methylacidiphilum infernorum A_MIAA_METI4', [99] 100 'Mycoplasma gallisepticum A_MIAA_MYCGA', [100] 101 'Mycoplasma penetrans A_MIAA_MYCPE', [101] 102 'Neorickettsia sennetsu A_MIAA_NEOSM', [102] 103 'Novosphingobium aromaticivorans A_MIAA_NOVAD', [103] 104 'Oligotropha carboxidovorans A_MIAA_OLICO', [104] 105 'Onion yellows A_MIAA_ONYPE', [105] 106 'Opitutus terrae A_MIAA_OPITP', [106] 107 'Pediococcus pentosaceus A_MIAA_PEDPA', [107] 108 'Pelagibacter ubique A_MIAA_PELUB', [108] 109 'Cutibacterium acnes A_MIAA_PROAC', [109] 110 'Psychrobacter sp. A_MIAA_PSYWF', [110] 111 'Rhodopirellula baltica A_MIAA_RHOBA', [111] 112 'Rhodospirillum centenum A_MIAA_RHOCS', [112] 113 'Rickettsia prowazekii A_MIAA_RICPR', [113] 114 'Salinibacter ruber A_MIAA_SALRD', [114] 115 'Solibacter usitatus A_MIAA_SOLUE', [115] 116 'Sorangium cellulosum A_MIAA_SORC5', [116] 117 'Sulfurihydrogenibium sp. A_MIAA_SULSY', [117] 118 'Synechococcus sp. A_MIAA_SYNR3', [118] 119 'Thermus thermophilus A_MIAA_THET8', [119] 120 'Treponema pallidum A_MIAA_TREPA', [120] 121 'Tropheryma whipplei A_MIAA_TROWT', [121] 122 'Uncultured termite A_MIAA_UNCTG', [122] 123 'Wolinella succinogenes A_MIAA_WOLSU', [123] 124 'Azobacteroides pseudotrichonymphae A_MIAA1_AZOPC', [124] 125 'Geobacter lovleyi A_MIAA1_GEOLS', [125] 126 'Hahella chejuensis A_MIAA1_HAHCH', [126] 127 'Porphyromonas gingivalis A_MIAA1_PORGI', [127] 128 'Treponema denticola A_MIAA1_TREDE', [128] 129 'Clostridium sp. A_R5AGI8_9CLOT', [129] 130 'Veillonella sp. A_R5BDP3_9FIRM', [130] 131 'Firmicutes bacterium A_R5CWF9_9FIRM', [131] 132 'Coprobacillus sp. A_R5G4C6_9FIRM', [132] 133 'Brachyspira sp. A_R5LIJ0_9SPIR', [133] 134 'Clostridium sp. A_R5SR97_9CLOT', [134] 135 'Corallococcus sp. A_R5W500_9DELT', [135] 136 'Clostridium sp. A_R5ZC67_9CLOT', [136] 137 'Clostridium sp. A_R6AYV2_9CLOT', [137] 138 'Clostridium sp. A_R6BSM0_9CLOT', [138] 139 'Firmicutes bacterium A_R6H037_9FIRM', [139] 140 'Clostridium sp. A_R6PD01_9CLOT', [140] 141 'Faecalibacterium sp. A_R6PWF6_9FIRM', [141] 142 'Staphylococcus sp. A_R6T832_9STAP', [142] 143 'Firmicutes bacterium A_R6U1Z5_9FIRM', [143] 144 'Ruminococcus sp. A_R6XCW7_9FIRM', [144] 145 'Firmicutes bacterium A_R6XFU8_9FIRM', [145] 146 'Clostridium sp. A_R6YL61_9CLOT', [146] 147 'Coprobacillus sp. A_R7DRE5_9FIRM', [147] 148 'Anaerotruncus sp. A_R7EUL2_9FIRM', [148] 149 'Acidiphilium sp. A_R7G499_9PROT', [149] 150 'Clostridium sp. A_R7GAX8_9CLOT', [150] 151 'Faecalibacterium sp. A_R7I6W6_9FIRM', [151] 152 'Subdoligranulum sp. A_R7K3Z0_9FIRM', [152] 153 'Acidaminococcus sp. A_R7K9G6_9FIRM', [153] 154 'Eubacterium sp. A_R7NNX5_9FIRM', [154] 155 'Dialister sp. A_R7PQ45_9FIRM', [155] 156 'uncultured Desulfofustis A_V4JJC2_9DELT', [156] 157 'Candidatus Saccharibacteria A_V5RWN0_9BACT', [157] 158 'Salinispira pacifica A_V5WKQ1_9SPIO', [158] 159 'Candidatus Babela A_V6DF92_9DELT', [159] 160 'Desulfurella acetivorans A_W0JLN2_DESAE', [160] 161 'Amborella trichopoda A_W1Q0J5_AMBTC', [161] 162 'Spiroplasma culicicola A_W6A7S4_9MOLU', [162] 163 'Ralstonia solanacearum B_A4L735_RALSL', [163] 164 'Rhodococcus fascians B_G8JYU5_RHOFA', [164] 165 'Agrobacterium vitis B_IPT_AGRVS', [165] 166 'Pantoea agglomerans B_IPT_PANAY', [166] 167 'Pseudomonas savastanoi B_IPT_PSESS', [167] 168 'Rhizobium radiobacter B_IPT_RHIRD', [168] 169 'Agrobacterium tumefaciens B_IPTZ_AGRT7', [169] 170 'Dichelobacter nodosus C_A5EW99_DICNV', [170] 171 'Hamiltonella defensa C_C4K6T1_HAMD5', [171] 172 'Staphylococcus aureus C_Q2FYB7_STAA8', [172] 173 'Nostoc sp. C_Q8YK11_NOSS1', [173] 174 'Lactococcus lactis C_Q9CI49_LACLA', [174] 175 'Xylella fastidiosa C_Q9PG00_XYLFA'; TREE Fig._S3_IPPTIPTVirE_ML = ((171:1.11545005,(173:1.1516476,(170:0.15641229,(174:1.11711247,(172:0.29903454,175:1.00954564):0.19519):0.43155112):0.23247046):0.12991437):1.174326215,((163:0.2780764,(166:0.69145543,(167:0.46188237,((168:0.31671651,165:0.45773724):0.22627882,(164:2.10924855,169:0.05164856):0.15421192):0.13295341):0.13208494):0.28745589):1.08660893,((73:0.40280779,114:0.28135469):0.03505846,((46:0.32531811,(89:0.47722767,(77:0.33242609,127:0.59205248):0.0484692):0.0897006):0.1439122,(30:0.57444065,(((51:0.36171739,58:0.39701116):0.13850706,((22:0.45468065,(100:0.67621584,101:0.67621584):0.57175361):0.07116255,(1:0.62676874,(83:0.65061576,(99:0.68503522,66:0.70067623):0.0817718):0.04600127):0.13978468):0.02113297):0.13562864,(((10:0.68764296,(50:0.43869872,(145:0.68288288,116:0.59832048):0.12710769):0.06006745):0.10462231,((79:0.22563531,95:0.40184703):0.12521374,((104:0.33129106,(112:0.32838716,103:0.38993565):0.11173273):0.30292742,(113:0.51896754,(67:0.74015635,(108:0.39401375,102:0.89867223):0.06516529):0.10573153):0.16252043):0.02845623):0.16838606):0.01946477,(((62:0.38313388,(18:0.47660044,6:0.33908382):0.04226287):0.09013522,(80:0.29496615,(122:0.60490906,(156:0.25768048,20:0.22644198):0.04888328):0.0318013):0.04431691):0.0440218,(((((42:0.22528769,128:0.38707851):0.02295336,(45:0.41115953,(158:0.30548845,25:0.36890695):0.05017258):0.07341174):0.10974069,((159:0.61478556,26:0.52975164):0.22262763,((160:0.58657916,38:0.35549865):0.08123362,(70:0.58685803,((31:0.30493454,(123:0.2424324,72:0.47589997):0.07425422):0.09937718,(17:0.19851253,(91:0.20714805,(90:0.20003066,55:0.14171171):0.31405386):0.15428823):0.08119104):0.40733134):0.10758729):0.13743749):0.04671144):0.0749565,((115:0.44660326,(41:0.3138122,74:0.29212436):0.15223988):0.03698677,((98:0.30921015,(65:0.29464645,(82:0.15104931,(110:0.40956006,86:0.23448417):0.0335341):0.18107756):0.08806911):0.1092993,(((5:1.04561088,39:0.20668204):0.2156692,(16:0.39812044,(37:0.55823474,2:1.32251504):0.26815697):0.42937394):0.09649289,(63:1.05643147,(96:0.67481879,((3:0.56228438,(12:0.17987193,11:0.2003609):0.04745391):0.20894581,(36:0.39756448,((4:0.53986997,21:0.13137297):0.08491157,((57:0.06161733,(59:0.15840579,52:0.07443035):0.05949012):0.08052861,(161:0.12169229,(56:0.04357579,(9:0.03199855,(60:0.0316576,(8:0.06656261,53:0.02645346):0.03448267):0.02505564):0.01230151):0.04163869):0.05290417):0.04498485):0.08183537):0.06992039):0.14217025):0.13678979):0.03359497):0.0894812):0.05581797):0.04151428):0.06383983,(((27:0.31070849,(34:0.14898933,61:0.21021018):0.10247064):0.05921284,(15:0.40377329,(137:0.28683315,(35:0.33166496,129:0.2250222):0.05880055):0.12719424):0.05383836):0.03912415,(((124:0.23930623,(120:0.22403147,126:0.3967594):0.10608923):0.70099726,((47:0.46455734,((117:0.18716204,68:0.27973378):0.12808057,(92:0.32097192,14:0.5941906):0.08825096):0.06908318):0.09312112,((29:0.22575304,(33:0.24723683,119:0.39603029):0.06683295):0.15456261,(125:0.26498361,((64:0.29367767,(54:0.50536356,81:0.19029018):0.19240915):0.07650874,(151:0.26349239,((111:0.38040905,49:0.38625254):0.07148061,(106:0.55160884,(78:0.48951081,(118:0.43582105,88:0.28052567):0.10601658):0.10829571):0.04087928):0.0420791):0.0322084):0.02499556):0.02362752):0.02397315):0.01701639):0.00000325,(((24:0.48315098,84:0.09325197):0.04484217,(71:0.39740647,(32:0.32976251,109:0.46733909):0.10852526):0.1117576):0.0783747,((105:1.0047482,142:0.19046196):0.18763878,((48:0.25963855,(133:0.49225683,(150:0.35273159,40:0.27165065):0.11271295):0.00002786):0.06654856,((((152:0.27707523,144:0.26268092):0.13356302,(143:0.11832031,148:0.28007198):0.06434807):0.09139066,((154:0.26255659,(135:0.2378846,136:0.98952527):0.17503877):0.11254538,((130:0.32096641,(43:0.56360246,(155:0.2229367,157:0.95670411):0.08793066):0.04176506):0.19966707,(153:0.20630116,(76:0.97289957,(149:0.30804048,13:0.4142826):0.03873971):0.05093851):0.04954507):0.04138666):0.03487055):0.03235821,((85:0.344199,(69:0.16659747,(162:0.51116619,((28:0.12795986,(121:0.43658805,75:0.3134195):0.33802501):0.09660157,((19:0.4117554,139:0.24170506):0.04281656,(131:0.26718368,(7:0.54002383,(44:0.29861998,23:0.4911274):0.19579152):0.25920057):0.10641783):0.03384959):0.03994756):0.00000435):0.03660702):0.03391885,((87:0.44476284,132:0.5547267):0.13769641,((94:0.30520112,(134:0.16663835,141:0.25845406):0.06616737):0.06513488,((140:0.44469553,146:0.41434532):0.0847878,((93:0.29445139,107:0.17592358):0.12728469,(97:0.26337073,(138:0.26077386,147:0.54783025):0.05884712):0.0788991):0.01869983):0.07330863):0.02280879):0.01597019):0.03468368):0.05616423):0.05505573):0.04492495):0.03997186):0.0000011):0.06493122):0.02942146):0.02121412):0.03323966):0.08263348):0.10303308):0.11501741):1.51546096):1.174326215); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 93; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 93; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1- 93; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1532270056250; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8672150430953924099; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5059108118666383379; mqVersion 351; checksumv 0 3 3968277080 null getNumChars 93 numChars 93 getNumTaxa 175 numTaxa 175 short false bits 1048575 states 1048575 sumSquaresStatesOnly 2.62679377670885E14 sumSquares 2.62679377670885E14 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 940; setLocation -9 -9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #8672150430953924099 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #8672150430953924099; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 868; setLocation -9 -9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5059108118666383379 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 868; setLocation -9 -9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;