#NEXUS [written Sun Jul 22 14:27:44 BST 2018 by Mesquite version 3.51 (build 898) at KN-ENVY15/192.168.0.18] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=92; TAXLABELS 'Rhodococcus fascians 1.IPT_RHOFA' Solanum_tuberosum_10.StM1DKB5 Solanum_tuberosum_11.StM1DKI2a Solanum_tuberosum_12.StM1DKI2b Solanum_tuberosum_13.StM1DZ85 Solanum_lycopersicum_14.SlK4CKW0 Solanum_lycopersicum_15.SlK4CKW5 Solanum_lycopersicum_16.SlK4D6T8 Solanum_lycopersicum_17.SlK4D6T9 Solanum_lycopersicum_18.SlK4D6Y8 Solanum_lycopersicum_19.SlK4D6Z0 'Pantoea agglomerans 2.IPT_PANAY' Solanum_lycopersicum_20.SlK4D6Z2 Solanum_lycopersicum_21.SlK4D6Z5 Solanum_lycopersicum_22.SlK4D7J2 Solanum_lycopersicum_23.SlK4D8Z1 Solanum_lycopersicum_24.SlK4D8Z4 Solanum_lycopersicum_25.SlK4D8Z5 Solanum_lycopersicum_26.SlK4D8Z7 Solanum_lycopersicum_27.SlK4D8Z8 Solanum_lycopersicum_28.SlK4D8Z9 Solanum_lycopersicum_29.SlK4D902 'Agrobacterium tumefaciens Fabrum 3.IPTZ_AGRT5' Solanum_lycopersicum_30.SlK4D903 Solanum_lycopersicum_31.SlK4D957 Solanum_lycopersicum_32.SlK4D958 Solanum_lycopersicum_33.SlK4D983 Solanum_lycopersicum_34.SlK4D985 Solanum_lycopersicum_35.SlK4D986 Physcomitrella_patens_36.PpA9SC20 Oryza_brachyantha_37.ObrJ3L312 Oryza_brachyantha_38.ObrJ3LNW5 Oryza_barthii_39.ObaA0A0D3FQI1 'Agrobacterium tumefaciens 4.IPTZ_AGRT7' 'Musa acuminata 40.GSMUA_AchrUn_randomT01160_001_IPT' Anabaena_variabilis_41.AvIPT2 Nostoc_sp._PCC7120_42.NoIPT2 'Agrobacterium tumefaciens 43.MIAA_RHIRD' 'Agrobacterium vitis 44.MIAA_AGRVS' 'Pantoea agglomerans 45.MIAA_PANAY' 'Rhodococcus fascians 46.MIAA_RHOFA' Physcomitrella_patens_47.PpIPT1 'Physcomitrella patens 48.PpIPT2_1' 'Physcomitrella patens 49.PpIPT2_2' 'Agrobacterium vitis 5.IPT1_AGRVS' 'Physcomitrella patens 50.PpIPT2_3' Physcomitrella_patens_51.PpIPT3 Physcomitrella_patens_52.PpIPT4 Physcomitrella_patens_53.PpIPT5 Physcomitrella_patens_54.PpIPT6 Oryza_sativa_55.OsIPT10 'Musa acuminata 56.MuatIPT_I' Arabidopsis_thalliana_57.AtIPT9 Solanum_lycopersicum_58.SlIPT6 'Solanum tuberosum 59.SttIPT_I' 'Agrobacterium tumefaciens 6.IPT_RHIRD' 'Musa acuminata 60.MuatIPT_II' Oryza_sativa_61.OsIPT9 Arabidopsis_thalliana_62.AtIPT2 Solanum_lycopersicum_63.SlIPT5 'Solanum tuberosum 64.SttIPT_II' 'Musa acuminata 65.MuaaIPT_d' 'Musa acuminata 66.MuaaIPT_a' 'Musa acuminata 67.MuaaIPT_b' 'Musa acuminata 68.MuaaIPT_c' 'Musa acuminata 69.MuaaIPT_e' Anabaena_variabilis_7.AvIPT1 Oryza_sativa_70.OsIPT6 Oryza_sativa_71.OsIPT8 Oryza_sativa_72.OsIPT7 Arabidopsis_thalliana_73.AtIPT6 Arabidopsis_thalliana_74.AtIPT1 Arabidopsis_thalliana_75.AtIPT4 Arabidopsis_thalliana_76.AtIPT8 Solanum_lycopersicum_77.SlIPT2 'Solanum tuberosum 78.StaIPT_a' Solanum_lycopersicum_79.SlIPT1 Nostoc_sp._PCC7120_8.NoIPT1 'Solanum tuberosum 80.StaIPT_b' Solanum_lycopersicum_81.SlIPT4 'Solanum tuberosum 82.StaIPT_c' Arabidopsis_thalliana_83.AtIPT3 Oryza_sativa_84.OsIPT4 Oryza_sativa_85.OsIPT5 Oryza_sativa_86.OsIPT3 'Musa acuminata 87.MuaaIPT_f' Oryza_sativa_88.OsIPT1 Oryza_sativa_89.OsIPT2 Solanum_tuberosum_9.StM1ANG4 Solanum_lycopersicum_90.SlIPT3 Arabidopsis_thalliana_91.AtIPT5 Arabidopsis_thalliana_92.AtIPT7 ; END; BEGIN CHARACTERS; TITLE Plant_Pfam_IPTdomain; DIMENSIONS NCHAR=133; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX 'Rhodococcus fascians 1.IPT_RHOFA' -GVYAIVGATGIGKSAEASKLALSHSAPIVVADRIQCYSDLLVTSGRAAKVEGLNRVWLDFDEAFRGEAVVMEGGSISLILRFAPFPVNVMPHYFARARQMLNLLTELAWFIASVAGLDCVWCEHGVLQQIFL Solanum_tuberosum_10.StM1DKB5 -KVVFIMGATGTEKSRLSVDLATHFRGEIINSDKMQVYKGLEIVTNKIAEKQGVRH-YLL------------------------------------------------------------------------- Solanum_tuberosum_11.StM1DKI2a -KVVFIMGATGTGKSRLSVDLATNFRVEIINTDKMQVFKIVEIVTNKIAEKQGVRHYFLE------------------------------------------------------------------------- Solanum_tuberosum_12.StM1DKI2b -KVVFILGARGTGKSRHSVDLATHFRGEIINSDKMQVYKGLEIVTNKMAEKQGVRQ-YLL------------------------------------------------------------------------- Solanum_tuberosum_13.StM1DZ85 ------MGATGTGKSRLSVYLATHFRGEIINSDKMQVYNGLEIVTTKIDEKQGVRH-YLLVDMVN-------------------------------------------------------------------- Solanum_lycopersicum_14.SlK4CKW0 -KVIFIMGATGTGKSRISVNLATHFRGEIINSDKMQVYKGLEIVTNKITEKQGVRH-YL-------------------------------------------------------------------------- Solanum_lycopersicum_15.SlK4CKW5 -KVIFIMGATRTGKSRLSIDLATQFRGEIINSDKMQVYKGLEIVTNKITEKQGVRH-YLLIP----------------------------------------------------------------------- Solanum_lycopersicum_16.SlK4D6T8 ------MGATGTGKSRLFVDIATHFRGEIINSDKMQVYKGLEIVSNKIAEKQGL------------------------------------------------------------------------------- Solanum_lycopersicum_17.SlK4D6T9 -KVIFIMGATGTGKSRLSVDIATHFRGEIINSDKMQVYKELEIVTNKIAEKQGVRH-YL-------------------------------------------------------------------------- Solanum_lycopersicum_18.SlK4D6Y8 -KVILIMGATGTGKSHLSVDLATHFRREIINSDKMHVYKGLEIFTNKITETQGVRQIFIP------------------------------------------------------------------------- Solanum_lycopersicum_19.SlK4D6Z0 -KVIFIIGAIGTGKSCLSVDVATHFGGEIINSDKIQVYKGLEIVTNKIAEKQGVRQIFIPIGEMDESKQMILQ-ASISSIKRNT------------------------------------------------- 'Pantoea agglomerans 2.IPT_PANAY' -NVYLLWGATTTGKTAFSVSVAKERGWSVIALDRFQGYHEISTGSGAPNELEKTERIYITITDYNGKSDFIIEGGSVSLLKEMVDFLIKIFRVFIRRITDMLSIMDEVFFPLEDIDGYRTIYCAHALWQEETP Solanum_lycopersicum_20.SlK4D6Z2 ------MVATGTGKSRLSVDVATHFGGEIINSDKMQVYKGLEIVINKIAEKQGVRQIFIPIGETDESKQMILQ-ASISSIKR--------------------------------------------------- Solanum_lycopersicum_21.SlK4D6Z5 ------MGATGTGKSGLSVDVATHFGGEIINLEKMHVYKVLEIVTNKLAEKQGVRH-YLL------------------------------------------------------------------------- Solanum_lycopersicum_22.SlK4D7J2 ------MGATGTEKSHLSVDLATHFKGEIINLDRMQVYKGLEIGTNKITEKQG-------------------------------------------------------------------------------- Solanum_lycopersicum_23.SlK4D8Z1 -KVIFIVEATGTGKSRLSVDLPTYFGGEIIKTDKMQVYKGLEIVSNMIIEKQGVRH-Y--------------------------------------------------------------------------- Solanum_lycopersicum_24.SlK4D8Z4 -KVIFIMGATGTGKSRLSVDLATHFRGEIINSDKMQVYKGLEIVTNKITE----------------------------------------------------------------------------------- Solanum_lycopersicum_25.SlK4D8Z5 -KVIFIMGATGAGKSCFSVDLATHFRGEIINLDKMQVYKGLEIVTNKITEKQGVRH-YL-------------------------------------------------------------------------- Solanum_lycopersicum_26.SlK4D8Z7 -KVIFVMGATGTGKSRLSVDLATHFRGEIINSDKMQVYKGLEI------------------------------------------------------------------------------------------ Solanum_lycopersicum_27.SlK4D8Z8 -KVIFIMGATGTGKSRLSVDLATHFRGEIINSDKMQVYKGLEIVTNNITEKQGVRH-Y--------------------------------------------------------------------------- Solanum_lycopersicum_28.SlK4D8Z9 -KVIFIMGATGTGKSHLSVDLATHFRGEIINSDKMQVYKGLEIVTNKMTEKQGVRH-YL-------------------------------------------------------------------------- Solanum_lycopersicum_29.SlK4D902 -KVIFIIGATGTGESRLSVDLATHFRGEIINSDKMQVYKGLEIVTNKITEKQGVRQIFIPIGEMDESKKMILQ-ASISSIKRNS------------------------------------------------- 'Agrobacterium tumefaciens Fabrum 3.IPTZ_AGRT5' MLLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPSELQSTRRIYLDLDSAH-EEGLILEGGSISLLNCMAGFQVKRLRAFLQRVAEMFSLLEELLWILEDIDGYRCAFAEHALSQEDFP Solanum_lycopersicum_30.SlK4D903 -KVIFIMGATGTGKSRLSVDLATHFRGEIINSDKMQVYKGLEIVTNKITEKQGVRH-Y--------------------------------------------------------------------------- Solanum_lycopersicum_31.SlK4D957 -KVIFIMGATGTGKSRLSVDLATHFRGEIINSDKMQVYKGLEIVTNKITETQGVRH-Y--------------------------------------------------------------------------- Solanum_lycopersicum_32.SlK4D958 -EVIFIIGAVGTGKSCFSVDLATHFRGKIINSDKMQVYKGLEIVK---------------------------------------------------------------------------------------- Solanum_lycopersicum_33.SlK4D983 -KVIFIMGATGTGKSRLSIDVATHFRGEIINSDKMQVYKGLEIVTNKITKTQGVRH-YL-------------------------------------------------------------------------- Solanum_lycopersicum_34.SlK4D985 ------MGATGTGKSHLSVNLATHFQGEIINSDKMQVYKGLEIVTNKI------------------------------------------------------------------------------------- Solanum_lycopersicum_35.SlK4D986 -KFIVIMGATGTGKSRLSVDLASHFRGEIINSDKMQVYKGLEIVTNKITETQGVQH-Y--------------------------------------------------------------------------- Physcomitrella_patens_36.PpA9SC20 --VIVIAGPTGVGKSRFAINLAKQLGGEIISADSIQ------------------------------------------------------------------------------------------------- Oryza_brachyantha_37.ObrJ3L312 --MVVIVGATGTGKTKLSIDAAQELGGEVVNADKIQLYAGLDVTT---------------------------------------------------------------------------------------- Oryza_brachyantha_38.ObrJ3LNW5 PKVVFVLGATATGKSKLAIFIAKRFGGEVINSDKIQVHEGFPIITNKV------------------------------------------------------------------------------------- Oryza_barthii_39.ObaA0A0D3FQI1 ---VVVMGATGTGKSRLAVDLALRFGGEVINSDKMQIHSGLDVVTNKVEEL---------------------------------------------------------------------------------- 'Agrobacterium tumefaciens 4.IPTZ_AGRT7' MILHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPSELQSTRRIYLDLDSAH-EDGLILEGGSISLLNCMAGFQVKRLRAFLQRVAEMFSLLEELLWILEDIDGYRCAFAEHALSQEDFP 'Musa acuminata 40.GSMUA_AchrUn_randomT01160_001_IPT' --VVFVMGATGTGKSRLAVDVAIHFGGEIVNSDKMQVYDGLDVES---------------------------------------------------------------------------------------- Anabaena_variabilis_41.AvIPT2 TKLIVICGATATGKSGLALNLAMRLGSVILSADSRQVYREFDIGTAKPAEQKAVPHYLIDMTDYQ-VSPLLLVGGTGLYIRSIVDYPQIGLDRLSKRTEQMIGLVGEVLCPLLNTLGYQEIYLQFAKRQRWFR Nostoc_sp._PCC7120_42.NoIPT2 TKLIVICGATATGKSGLALNLAMRLGSVILSADSRQVYREFDIGTAKPAEQRAVPHYLIDMTDYQ-VSPLLLVGGTGLYIRSIVDYPQIGLDRLTKRTEQMIGLVGEVLCPLLNTLGYQEIYLQFAKRQRWFR 'Agrobacterium tumefaciens 43.MIAA_RHIRD' FDAILITGPTASGKSALALRLARERNGVVINADSMQVYDTLRVLTARPHEMEGVPHRLYGYSEWLEGRFPVIVGGTGLYFKALTDPEQKFIVVLHRRFEAMMGAVEEVLLTAMKAIGVAQIMLQYAKRQMWFR 'Agrobacterium vitis 44.MIAA_AGRVS' FDAILITGPTASGKSALALRLAAEVGGVVINADSMQVYDTLRVVTARPEDMQAVPHHLYGYSDWLQNRLPVIVGGTGLYFKALTDPQRKLVVLLHRRFAMMMGAVEEVLLPAMKAIGVSQIMLQYAKRQMWFR 'Pantoea agglomerans 45.MIAA_PANAY' PKAIFLMGPTASGKTALAIELRKQLPVELISVDSALIYRQMDIGTAKPEELAVAPHHLLDYSEFRAGRIPLLVGGTMLYFKALLPYDQFAIALLHLRFEQMLGFEAESLFPSIRCVGYRQMYLQLAKRQMWLR 'Rhodococcus fascians 46.MIAA_RHOFA' LRPIAVIGPTATGKSDLGLDLAETLGGEVVNIDAMQQYRGMDIGTAKLDDRRGIPHHRLDATNYQRGNVPVIVGGSMMYVQSLLRWGVLGVDELDRRTDLMFGLVDEVLITASRAIGYAQVFLRYVRRQRWFR Physcomitrella_patens_47.PpIPT1 GRVVIIAGPTGVGKSRLALALAKRLRGEIISADSVQVYRTLDVGSAKTDEREGIPHHLIDYTYFYKGSVPIVVGGTGMYLRWYMDYDCYFLYELYLRCEQMAGLLDEALLSASRSIGYQLAFLNYVKRQLWFR 'Physcomitrella patens 48.PpIPT2_1' PRVILIAGPTAVGKTRLSIELAKTLGGEVINADSVQVYQGLDVGAAKAEERQGIPHHVMDYSQFLKGLVPIVVGGTGMYMRWFMDYDCYFLYDLYIRCEQMI-LLEEALLSASKAIGYEEALLGLVRKQIWFR 'Physcomitrella patens 49.PpIPT2_2' ----------------------------------VQVYQGLDVGAAKAEERQGIPHHVMDYSQFLKGLVPIVVGGTGMYMRWFMDYDCYFLYDLYIRCEQMI-LLEEALLSASKAIGYEEALLGLVRKQIWFR 'Agrobacterium vitis 5.IPT1_AGRVS' MEAHLIFGPTSTGKTSVAIALAKRTGFPVIVLDRIQCYSQLSVGGGRPAEFQGTRRIYLIISRAH-EGGVILEGGSISLFKRMAGFTVTRLHIFLKRINQMMSFLGELVWTLEGICGYRYAFACYARQQEELP 'Physcomitrella patens 50.PpIPT2_3' ----------------------------------VQVYQGLDVGAAKAEERQGIPHHVMDYSQFLKGLVPIVVGGTGMYMRWFMDYDCYFLYDLYIRCEQMI-LLEEALLSASKAIGYEEALLGLVRKQIWFR Physcomitrella_patens_51.PpIPT3 GRVVIIAGPTAVGKSRVAIDLAKQLGGEIISADSIQVYQGLNVGSAKTHEREGIPHHLVDYSQFCRGRVPIVVGGTCSYLRWYMNYDCYFLYELYLRCEHMLGLLQEALLSASRGIGYQEVTYSLVKKQLWFR Physcomitrella_patens_52.PpIPT4 ----------------------------------LQVYNGMNVGSAKTHEREGVPHHLLDYSRFFRGRVPIVVGGTCTYMRRYMDYDCYFFYELYLRCEQMIGLLQEALLFSSRGIGYQETMISLVKKQLWFR Physcomitrella_patens_53.PpIPT5 GRVVVIAGPTAVGKSRIAIALAKQLGGEIISADSIQVYKGMNVGSAKTIERQGVPHHLLDYSRFLRGRVPIIVGGTCTYLRWFMDYDCYFLYELYLRCEQMLGLLQEALLSASRGIGYQEKFLSLVKKQLWFR Physcomitrella_patens_54.PpIPT6 GRVVVIAGPTAVGKSRVAIALAKQLRGEIISADSIQVYKGMNVGSAKTLEREGVPHHLLDYSRFLSGHVPIVVGGTCTYLHWYMDYDCYFLYELYLRCEQMIGLLQEALLSASRGIGYQEAFLSLVKKQLWFR Oryza_sativa_55.OsIPT10 NKVIVISGPTGAGKTRLALDLAKRLSGEIISADSVQVYRGLDVGSAKPSDRAAVPHHLIDYSDFFRARVPIVAGGTGLYLRWYIDYDCIFLAELYLRCEEMLGLLSEALLSATCAIGYRQAYLNFSKRQMWFR 'Musa acuminata 56.MuatIPT_I' ------------------------------------------------------------------------------------DYNCFFLTDLYLRCEDMLGLLSEALLSATRAIGYRQAYLNFAKRQIWFR Arabidopsis_thalliana_57.AtIPT9 EKVIVISGPTGAGKSRLAMELAKRLNGEIISADSVQVYKGLDVGSAKPSDRKVVPHHLIDYSQFYRGRVPIVTGGTGLYLRWFMDYDCFFLSALYFRCEDMLGVLSEALLPATRAIGYRQAYLNFAKRQMWFR Solanum_lycopersicum_58.SlIPT6 EKVIVISGPTGAGKSKLALELAKRINGEIISADSVQVYRGLDVGSAKPDERKEVVHHLVDYSQFFRGRVPIVAGGTGLYLRWFIDYDCYFLSDLYFRCEDMLGILSEALLSATRAIGYRQAYLNFAKRQMWFR 'Solanum tuberosum 59.SttIPT_I' EKVIVISGPTGAGKSKLALELAKRLNGEIISADSVQVYRGLDVGSAKPDERKEVVHHLVDYSQFFRGRVPIVAGGTGLYLRWFIDYDCYFLSDLYFRCEDMLGILSEALLSATRAIGYRQAYLNFAKRQMWFR 'Agrobacterium tumefaciens 6.IPT_RHIRD' MDLRLIFGPTCTGKTSTAIALAQQTGLPVLSLDRVQCCPQLSTGSGRPEELKGTTRLYLDITQAH-KGGLILEGGSISLLRCMADFRIIRNESFMTRVKQMLSIIQELLWILEGIDGYRYAFAIHARRQEKFP 'Musa acuminata 60.MuatIPT_II' ------MGATGAGKSRVAIDLASHFSGEVVNADSMQVYRGLDVLTNKVPDRNGVPHHLLGFTDFRRDGLPVVVGGTNYYIQALVRYNFVWVDVLDQRVDCMIGLLDEVIYGICQAIGVREFFF---------- Oryza_sativa_61.OsIPT9 RKVVVVMGATGAGKSRLAVDLASHFAGEVVSADSMQVYGGLDVLTNKVHEQKGVPHHLLSFTDFRRGGLPVIVGGTNFYIQALVRFDFLWLDVLDERVDCMIGLLDEVIYGLRQAIGVHEFFFRLVRRQRRLH Arabidopsis_thalliana_62.AtIPT2 AKVVVIMGPTGSGKSKLAVDLASHFPVEIINADAMQIYSGLDVLTNKVDEQKGVPHHLLGFTDFRRNHIPVLVGGTHYYIQAVVRFDLICMDVLDQRVDAMVGLLDEVIYGLRQSIGVREFFL---------- Solanum_lycopersicum_63.SlIPT5 PKVVVIMGATGSGKSKLAIDLASHFPIEIINADSMQVYQGLDVLTNKVQEQKGVPHHLLGFTDFRRNRLPVIVGGTNYYIQALVRYDFLCVNTLDRRVDHMVGLLKEVIYGLRQAIGVREFFL---------- 'Solanum tuberosum 64.SttIPT_II' PKVVVIMGATGSGKSKLAIDLASHFPIEIINADSMQVYQGLDVLTNKVQEQKEVPHHLLGFTDFRRNRLPVIVGGTNYYIQALVRYDFLCVNTLDRRVDHMVGLLKEVIYGLRQAIGVREFFL---------- 'Musa acuminata 65.MuaaIPT_d' ------MGATGTGKSKLSIDLATEFSGEVVNSDKIQVYRGLDITTNKMADRCGVPHHLLGLPAFRRGRLPVVAGGSNSFIYAAM------------------------------------------------- 'Musa acuminata 66.MuaaIPT_a' ------MGATGTGKSKLSVDLSVMFSGEVVNSDK-QVYRGLDITTNKIVERRGVPHHLLGLPGFRRGRVPVLAGGSNSFIHALL------------------------------------------------- 'Musa acuminata 67.MuaaIPT_b' ------MGATGTGKSKLSIDLSAMFSGEVVNSDK-QVYRGLDITTNKIAERRGVAHHLLGLPGFRRHRVPVLAGGSNSFIHALLRYRFLWVHVLTRRVDEMVGMIKELYFGLGKAIGVPEFYFRLAEEQVKIK 'Musa acuminata 68.MuaaIPT_c' ------MGATGTGKSKLSVELATVFDGEVVNSDK-QVYRGLDITTNKMGERCGVPHHLLGLDGFRRGRIPVVAGGSNSFIHAAMRYRFLWVDALARRVEEMVGMVEELYFGLDKAIGVSEFYFRLAEQQAKIE 'Musa acuminata 69.MuaaIPT_e' ------MGATGTGKSKLSIELATRFSGEVVNSDKIQVYRGLDVTTNKMVERCGVPHHLLGVSTFR------------------------------------------------KAIGVAELYFRLAEEQVKIE Anabaena_variabilis_7.AvIPT1 MRLHIILGPTSTGKTDRSVVLAKQTKAPVIVLDRIQIYQELATGSGRPDELEGTTRIYLELNESLQHKLLILEGGSISLCTALWNYQIEYVKLYQRRMQNALSLIEELVWFVQTVVGYDVLWCQYSQNQRVFD Oryza_sativa_70.OsIPT6 NKLVVIIGATGTGKTRLSIEIAKAIGGEVVNADKMQIYDGLDITTNKVQDRCGISHHLIAFPFFRRGHTPIVVGGSNSLIHGLLRSQFLWVHILNHRVDDMVGLVEEIYFGLGKTIGVPELYF---------- Oryza_sativa_71.OsIPT8 TGMVVIVGATGTGKTKLSIDAAQELAGEVVNADKIQLYDGLDVTTNKVADRRGVPHHLLGLPSFRRGRVPVVAGGSNSLIHALLRFPLLWVDVLDRRVDDMVGMVEELYFGLGKAIGVPELYFVLAARQVKIR Oryza_sativa_72.OsIPT7 TRMVVIVGATGTGKTKLSIDAAKVIGGEVVNADKIQLYDGLDVTTNKVADRRGVPHHLLGLPSFRRRLVPVIAGGSNSLIHALLRFPLLWVHLLDRRVDDMVGMVEELYFGLGKAIGVPELYFVLAAAQVKIR Arabidopsis_thalliana_73.AtIPT6 DKVVLITGTTGTGKSRLSVDLATRFFPEIINSDKMQIYKGFEIVTNLIHEQGGVPHHLLGLTEFRSKKLPIVVGGSNSFNHALLRYKILWVDVLFNRVDQMIGLVEQLLYGVRKTIGVEEFYFRLVKKQKKIM Arabidopsis_thalliana_74.AtIPT1 DKVVVILGATGAGKSRLSVDLATRF-PEIINSDKIQVYEGLEITTNQIQDRRGVPHHLLGLTEFRRQKVPIIAGGSNSFVHALLRYEFIWVDVLYRRVDEMMGMFEELFYGIRKAIGVPEFYFTLAKRQVKIE Arabidopsis_thalliana_75.AtIPT4 DKMVVIMGATGSGKSSLSVDLALHFKAEIINSDKMQFYDGLKITTNQSEDRRGVPHHLLGVTEFRRKKLPILAGGSNSYIHALLKYDFIWIDVLFLRLDLMMGMFEEIFHGIWKAIGVQEFYLQLTKDQIKIN Arabidopsis_thalliana_76.AtIPT8 QKVVVIMGATGSGKSCLSIDLATRFSGEIVNSDKIQFYDGLKVTTNQMLERCGVPHHLLGLTEFRRGNLPIIAGGSNSFIHALLRYEFLWVDVLFKRVDQMMGMFEELFYGIHKTIGIPEFYFRLAKKQIRIM Solanum_lycopersicum_77.SlIPT2 KKIVVIMGATGCGKSKLSIELATHFFPEVINSDKIQVYNGLDITTNKINERCGIVHHLLGFTDFRRGKIPFIVGGSNSFIYALLRYQFIWVDVLNKRVDEMLEMFEELYFGIRKAIGVPEFYFVLAERQVKIM 'Solanum tuberosum 78.StaIPT_a' ------MGATGCGKSKLSIDLATHFFPEVINSDKIQVYNGLEITTNKITERCGIHHHLLGFSDFRRGKIPFIVGGSNSFIYALLRYQFIWVDVLNKRVDEMLEMFEELYFGIRKAIGVPEFYFVLAEIQVKIM Solanum_lycopersicum_79.SlIPT1 KKIVVIMGATGSGKSKLSIDLATRGFNEIINSDKIQVSKGLDITTNKINEQSGVVHHLLGFSDFRRRRLPLIVGGSNSFIYALLRYHFILVDVLNQRVDEMMGMYEELFFGIRKAIGVPEMYFELAEKQIKIQ Nostoc_sp._PCC7120_8.NoIPT1 MRLHIILGPTSVGKTDRSVVLAKQTKAPVIVLDRIQIYQEIATGSGRPDELEGTTRIYLELNESLQHKLLILEGGSISLCTALWNYQIEYVKLYQRRMQNALSLIEELVWLVRTVVGYDVLWCQYSQNQRAFD 'Solanum tuberosum 80.StaIPT_b' ------MGATGSGKSKLSIDLATRFFPEIINSDKIQVSKGIDITTNKIPERGGVVHHLLGFSDFRRRKLPLIVGGSNSFIYALLRYHFIWVDVLNQRVDEMMGMYEELFFGIRKAIGVPEMYFELAEKQMKIQ Solanum_lycopersicum_81.SlIPT4 DKVVVVMGVTGAGKSKLSIDLATQFDGEIINSDKIQVYKGLDIATNKIEERCGVPHHCLGFTNFCRGKLPIIVGGSNSFIEAFVRYDFLWVDVLNERVDKMVGMVDEVIFGIRKAIGVPEFYFILASKQLKIK 'Solanum tuberosum 82.StaIPT_c' DKIVVVMGVTGAGKSKLSIDLATQFNGEIINSDKIQVYKGLEIATNKIEERCGVPHHCLGFTNFCRGKLPIIVGGSNSFIEAFVRYDFLWVDVLNERVDKMVGLVDEVMFGIRKAIGVPEFYFILASKQLKIN Arabidopsis_thalliana_83.AtIPT3 DKVVVIMGATGTGKSRLSVDIATRFRAEIINSDKIQVHQGLDIVTNKIEESCGVPHHLLGLTNYCRGKLPIIVGGSNSYVEALVRYDFLWVDVLHERVDKMVGMVEEVFFGIKKAIGFPEFFFELACRQRKIE Oryza_sativa_84.OsIPT4 HKAVVVMGATGTGKSRLAVDLALRFGGEVINSDKMQIHSGLDVVTNKVEECAGVPHHLISFTDFRRGRLPIIAGGSNSYVEELVRYEFLWVDVLRRRVDEMCGLVREVAFGIWRAIGVPELYLRLACRQHKIE Oryza_sativa_85.OsIPT5 HKAVVVMGATGTGKTRLAVDLALQFGGEVINADKLQLHRGLDVATNKADERAGVPHHLIGFTDFRRGALPIIAGGSNSYIEELVRYDFLWVDVLHRRVDDMCGMVAEIAFGVWRAIGVPELYLWLSCRQRKIV Oryza_sativa_86.OsIPT3 GKVVVVMGATATGKSKLAIDLALRFGGEVINSDKIQVHDGLDVVTNKVEERAGVPHHLIGYGDFRRGRVPVIAGGSNRYLEALLRHEFLWVDALHHRVDRMVGLVGEVLFGIRRSIGVPEMYLSLARRQLKIH 'Musa acuminata 87.MuaaIPT_f' -------------KSKLAIALAKSFRG---------------------------------FTHFRRGGLPIVAGGSNSYIEELVRYDFLWVDVLHSRVDKMVGLVKEAAFGIWRSIGVSEMYFRLACCQLKIR Oryza_sativa_88.OsIPT1 PKVIFVLGATATGKSKLAIRLAARFDGEVINSDKIQAHDGFPVITNKVEERAGVAHHLLGFTDFRAGRLPVVAGGSNIYVEALVAYDFLWTDLLRARVDDMVGLVGEAGFGVRRAIGLPEMYLRLTVSQVKIR Oryza_sativa_89.OsIPT2 PKVVFVLGATATGKSKLAISIAERFGGEVINSDKIQVHDGFPIITNKVEERAGVPHHLLGFTDFRAGRLPVVAGGSNTYVEALV-HDFLWTDLLRARVDDMVGLVGEAGFGVRRAIGIPEMYLRLAATQVKIR Solanum_tuberosum_9.StM1ANG4 -EVVFIMGATGTGKSRLSVDHAIHFRGEIINSDKIQVYKGLDIMTNKIAEKQGVRQ-YLL------------------------------------------------------------------------- Solanum_lycopersicum_90.SlIPT3 DKVVIVMGATGTGKSRLSIDLAKQFSAEVVNSDKMQIYEGLDIVTNKVKETCGIPHHLLSFTDFCKGQLPIIAGGSNSYIKALVRYEFLWIDILQERVDKMVGLVDEAFFGIRRAIGVPEMYFKLACCQRNIL Arabidopsis_thalliana_91.AtIPT5 DKVVFVMGATGTGKSRLAIDLATRFPAEIVNSDKIQVYKGLDIVTNKVEESLGVPHHLLGFTDFQRDRVPIIAGGSNSYIEALVRYNFLWVDVLHERVDKMVGLVDEVIFGIRRAIGVPELFLLLACRQLKIQ Arabidopsis_thalliana_92.AtIPT7 EKVIFVMGATGSGKSRLAIDLATRFQGEIINSDKIQLYKGLDVLTNKVKECRGVPHHLLGLTQYSNNKLPIVAGGSNSYIEALVNYDFIWVDVLNKRVDRMMGLLEEVVFGIRRAIGVPELYLILACRQLKIQ ; END; BEGIN TREES; Title Plant_Pfam_IPTdomain_tree; ID 0164bfffe12a2; LINK Taxa = Taxa; TRANSLATE [0] 1 'Rhodococcus fascians 1.IPT_RHOFA', [1] 2 Solanum_tuberosum_10.StM1DKB5, [2] 3 Solanum_tuberosum_11.StM1DKI2a, [3] 4 Solanum_tuberosum_12.StM1DKI2b, [4] 5 Solanum_tuberosum_13.StM1DZ85, [5] 6 Solanum_lycopersicum_14.SlK4CKW0, [6] 7 Solanum_lycopersicum_15.SlK4CKW5, [7] 8 Solanum_lycopersicum_16.SlK4D6T8, [8] 9 Solanum_lycopersicum_17.SlK4D6T9, [9] 10 Solanum_lycopersicum_18.SlK4D6Y8, [10] 11 Solanum_lycopersicum_19.SlK4D6Z0, [11] 12 'Pantoea agglomerans 2.IPT_PANAY', [12] 13 Solanum_lycopersicum_20.SlK4D6Z2, [13] 14 Solanum_lycopersicum_21.SlK4D6Z5, [14] 15 Solanum_lycopersicum_22.SlK4D7J2, [15] 16 Solanum_lycopersicum_23.SlK4D8Z1, [16] 17 Solanum_lycopersicum_24.SlK4D8Z4, [17] 18 Solanum_lycopersicum_25.SlK4D8Z5, [18] 19 Solanum_lycopersicum_26.SlK4D8Z7, [19] 20 Solanum_lycopersicum_27.SlK4D8Z8, [20] 21 Solanum_lycopersicum_28.SlK4D8Z9, [21] 22 Solanum_lycopersicum_29.SlK4D902, [22] 23 'Agrobacterium tumefaciens Fabrum 3.IPTZ_AGRT5', [23] 24 Solanum_lycopersicum_30.SlK4D903, [24] 25 Solanum_lycopersicum_31.SlK4D957, [25] 26 Solanum_lycopersicum_32.SlK4D958, [26] 27 Solanum_lycopersicum_33.SlK4D983, [27] 28 Solanum_lycopersicum_34.SlK4D985, [28] 29 Solanum_lycopersicum_35.SlK4D986, [29] 30 Physcomitrella_patens_36.PpA9SC20, [30] 31 Oryza_brachyantha_37.ObrJ3L312, [31] 32 Oryza_brachyantha_38.ObrJ3LNW5, [32] 33 Oryza_barthii_39.ObaA0A0D3FQI1, [33] 34 'Agrobacterium tumefaciens 4.IPTZ_AGRT7', [34] 35 'Musa acuminata 40.GSMUA_AchrUn_randomT01160_001_IPT', [35] 36 Anabaena_variabilis_41.AvIPT2, [36] 37 Nostoc_sp._PCC7120_42.NoIPT2, [37] 38 'Agrobacterium tumefaciens 43.MIAA_RHIRD', [38] 39 'Agrobacterium vitis 44.MIAA_AGRVS', [39] 40 'Pantoea agglomerans 45.MIAA_PANAY', [40] 41 'Rhodococcus fascians 46.MIAA_RHOFA', [41] 42 Physcomitrella_patens_47.PpIPT1, [42] 43 'Physcomitrella patens 48.PpIPT2_1', [43] 44 'Physcomitrella patens 49.PpIPT2_2', [44] 45 'Agrobacterium vitis 5.IPT1_AGRVS', [45] 46 'Physcomitrella patens 50.PpIPT2_3', [46] 47 Physcomitrella_patens_51.PpIPT3, [47] 48 Physcomitrella_patens_52.PpIPT4, [48] 49 Physcomitrella_patens_53.PpIPT5, [49] 50 Physcomitrella_patens_54.PpIPT6, [50] 51 Oryza_sativa_55.OsIPT10, [51] 52 'Musa acuminata 56.MuatIPT_I', [52] 53 Arabidopsis_thalliana_57.AtIPT9, [53] 54 Solanum_lycopersicum_58.SlIPT6, [54] 55 'Solanum tuberosum 59.SttIPT_I', [55] 56 'Agrobacterium tumefaciens 6.IPT_RHIRD', [56] 57 'Musa acuminata 60.MuatIPT_II', [57] 58 Oryza_sativa_61.OsIPT9, [58] 59 Arabidopsis_thalliana_62.AtIPT2, [59] 60 Solanum_lycopersicum_63.SlIPT5, [60] 61 'Solanum tuberosum 64.SttIPT_II', [61] 62 'Musa acuminata 65.MuaaIPT_d', [62] 63 'Musa acuminata 66.MuaaIPT_a', [63] 64 'Musa acuminata 67.MuaaIPT_b', [64] 65 'Musa acuminata 68.MuaaIPT_c', [65] 66 'Musa acuminata 69.MuaaIPT_e', [66] 67 Anabaena_variabilis_7.AvIPT1, [67] 68 Oryza_sativa_70.OsIPT6, [68] 69 Oryza_sativa_71.OsIPT8, [69] 70 Oryza_sativa_72.OsIPT7, [70] 71 Arabidopsis_thalliana_73.AtIPT6, [71] 72 Arabidopsis_thalliana_74.AtIPT1, [72] 73 Arabidopsis_thalliana_75.AtIPT4, [73] 74 Arabidopsis_thalliana_76.AtIPT8, [74] 75 Solanum_lycopersicum_77.SlIPT2, [75] 76 'Solanum tuberosum 78.StaIPT_a', [76] 77 Solanum_lycopersicum_79.SlIPT1, [77] 78 Nostoc_sp._PCC7120_8.NoIPT1, [78] 79 'Solanum tuberosum 80.StaIPT_b', [79] 80 Solanum_lycopersicum_81.SlIPT4, [80] 81 'Solanum tuberosum 82.StaIPT_c', [81] 82 Arabidopsis_thalliana_83.AtIPT3, [82] 83 Oryza_sativa_84.OsIPT4, [83] 84 Oryza_sativa_85.OsIPT5, [84] 85 Oryza_sativa_86.OsIPT3, [85] 86 'Musa acuminata 87.MuaaIPT_f', [86] 87 Oryza_sativa_88.OsIPT1, [87] 88 Oryza_sativa_89.OsIPT2, [88] 89 Solanum_tuberosum_9.StM1ANG4, [89] 90 Solanum_lycopersicum_90.SlIPT3, [90] 91 Arabidopsis_thalliana_91.AtIPT5, [91] 92 Arabidopsis_thalliana_92.AtIPT7; TREE 'Fig. S6 Plant_Pfam_IPT_IPPT' = (23:0.01540513,34:0.00000167,(12:0.9161477,(56:0.25174706,(45:0.28388667,(1:1.36543195,((67:0.00000001,78:0.03699988):0.32594456,(((36:0.0000015,37:0.01519768):0.59422401,(((42:0.14006789,(30:0.09465474,((43:0.00000001,(46:0.00000001,44:0.0000004):0.00000001):0.26771747,(47:0.084282,(48:0.11495224,(49:0.05174232,50:0.03805735):0.01789563):0.04104101):0.08550572):0.02279271):0.05853153):0.17528208,(51:0.10229323,(52:0.0609181,(53:0.08274039,(54:0.00773071,55:0.00000001):0.05079199):0.03473023):0.02568655):0.04831344):0.31659318,(40:0.53906262,(38:0.10082689,39:0.09338801):0.55061784):0.09356639):0.10708082):0.11144587,(41:0.59633903,(((59:0.16828648,(60:0.00000001,61:0.0082419):0.05854632):0.08049375,(57:0.11349063,58:0.1078631):0.06796946):0.1440543,((((86:0.21199256,(84:0.16958208,(83:0.00000683,33:0.02484487):0.06014533):0.08601516):0.04138135,(85:0.15740011,(87:0.10222267,(32:0.08085761,88:0.00000081):0.02279811):0.27730943):0.06176343):0.06804392,(35:0.29767143,(92:0.25168963,91:0.0767486):0.03058306):0.03323722):0.01187806,(90:0.22008515,(((80:0.00001252,81:0.04623866):0.10688319,(((62:0.06254891,(65:0.09999504,66:0.11226083):0.01850713):0.05794234,((68:0.27708776,(70:0.04499011,(31:0.03114854,69:0.01541288):0.03820692):0.09759656):0.20407883,(63:0.03828716,64:0.03224945):0.06156802):0.02646778):0.17588377,(((72:0.06706111,73:0.34045433):0.05559161,(74:0.14751942,71:0.3196253):0.02439107):0.08894034,((75:0.0072271,76:0.04304728):0.11089157,(77:0.0447084,79:0.03043148):0.07976919):0.09213757):0.04743923):0.12020521):0.04891156,(82:0.10497773,((2:0.01906156,((4:0.08029813,89:0.12765235):0.01916649,(3:0.17316323,14:0.17207024):0.02598998):0.00000033):0.00000033,((8:0.06966101,9:0.01995871):0.01912391,((22:0.0361712,(10:0.12195763,(11:0.07717992,13:0.04146272):0.05750312):0.00000102):0.08694889,(((16:0.23461485,(21:0.01924021,((28:0.05554708,15:0.12876615):0.00000412,(26:0.14022583,18:0.04032867):0.03983801):0.00000089):0.01936063):0.00000059,(7:0.06224227,(((29:0.082703,25:0.00000094):0.00000095,27:0.05879891):0.00000193,(19:0.02749018,17:0.00000001):0.00000001):0.01944395):0.00000072):0.00000072,(20:0.01955104,(24:0.00000096,(5:0.13944997,6:0.02279848):0.02056979):0.000001):0.00000143):0.00000164):0.02782979):0.02662723):0.37591565):0.04584232):0.05613406):0.06512054):0.1591444):0.38924523):0.07735619):1.90122031):0.18531687):0.57327394):0.13031834):0.15945967):0.17051131); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 133; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 133; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1- 133; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1532266064364; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2004957786494900063; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6358867233501073742; mqVersion 351; checksumv 0 3 1460814028 null getNumChars 133 numChars 133 getNumTaxa 92 numTaxa 92 short false bits 1048575 states 1048575 sumSquaresStatesOnly 1.17358471698075E14 sumSquares 1.17358471698075E14 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 209; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 940; setLocation -9 -9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #2004957786494900063 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #2004957786494900063; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1711 868; setLocation -9 -9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2004957786494900063 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 0164bfffe12a2; toggleUseWeights off; endTell; setAssignedID 1141.1532264786411.494174200456131576; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1711 868; setLocation -9 -9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow bootstrapFrequency; toggleShow posteriorProbability; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6358867233501073742 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1711 868; setLocation -9 -9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;