#NEXUS [written Tue Apr 30 18:35:40 SGT 2019 by Mesquite version 3.51 (build 898) at NoPsechrids.local/172.23.81.94] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=21; TAXLABELS Lasiodiplodia_sp._PLM_590A Lasiodiplodia_sp._PLM_758A Lasiodiplodia_sp._PLM_789A Lasiodiplodia_citricola_GU945354_GU945340 Lasiodiplodia_crassispora_DQ103550_EU673303 Lasiodiplodia_eqyptiacae_JN814397_JN814424 Lasiodiplodia_gilanensis_GU945351_GU945342 Lasiodiplodia_gonubiensis_AY639595_DQ103566 Lasiodiplodia_hormozganensis_GU945355_GU945343 Lasiodiplodia_iraniensis_GU945346_GU945334 Lasiodiplodia_margaritacea_EU144050_EU144065 Lasiodiplodia_mahajangana_FJ900597_FJ900643 Lasiodiplodia_missouriana_HQ288225_HQ288267 Lasiodiplodia_parva_EF622083_EF622063 Lasiodiplodia_plurivora_EF445362_EF445395 Lasiodiplodia_pseudotheobromae_EF622077_EF622057 Lasiodiplodia_rubropurpurea_DQ103553_EU673304 Lasiodiplodia_theobromae_AY640288_AY640258 Lasiodiplodia_venezuelensis_DQ103547_EU673305 Lasiodiplodia_viticola_HQ288227_HQ288269 Neofusicoccum_parvum_AY236943_AY236888 ; END; BEGIN CHARACTERS; TITLE Lasiodiplodia_ITS_TEF_Alignment; DIMENSIONS NCHAR=765; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Lasiodiplodia_sp._PLM_590A CGGC-TCGAC-TCTCCCACCC-TTTGTGAACGTACCTCTGTTGCTTTGGCG---GCTCCGG-----------------------------------------CCGCCAAAGGACCTCCAAACTCCAGTCAGTAAACGCAGACGTCTG-ATAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGAATTGGGCACCGTCCTCACTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGA--ATACACCTCGCTTTGGAGTGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTCTCAAGGTTGACCTCGGAT-----TTCGAGAAG-TTCGTG--ATTTCCCCCCCTCCCAACCCCGC-TTGGCT------CTGTAGCGCTGCGGCGCACAGTCCGCCTTATCGCTCTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCT-AGCCTCGTCTGGG-TTCGGCAAAATGACCGCACTT-GGTTTTTTTGCGACCGGCGTCTGGCCGACGCG---CCTCCCCACTAGCGAAAAATGCTCTGGCCACTCATGTACCGTCG---TACGAGCAAAG Lasiodiplodia_sp._PLM_758A CGGC-TCGAC-TCTCCCACCC-TTTGTGAACGTACCTCTGTTGCTTTGGCG---GCTCCGG-----------------------------------------CCGCCAAAGGACCTTCAAACTCCAGTCAGTAAACGCAGACGTCTG-ATAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGAATTGGGCACCGTCCTCACTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGA--ATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTCTCAAGGTTGACCTCGGAT-----TTCGAGAAGGTCCGTGCACGCATGTCGTTTTTTAACCCCTC-TCGACTTCGGCGCTGCAGCGCTGCGGCGCACAGTCCGCCTTATCGCTTTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCT-AGCCTCGTCTGGG-TTCGGCAAAATGACCGCACTT-GGTTTTTTTGCGACCGGCGTCTGGCCGACGCG---CCTCCCCACTAGCGAAAAATGCTCTGACCACTCATGTACCGTCG---TACGAGCAAAG Lasiodiplodia_sp._PLM_789A CGGC-TCGAC-TCTCCCACCC-TTTGTGAACGTACCTCTGTTGCTTTGGCG---GCTCCGG-----------------------------------------CCGCCAAAGGACCTTCAAACTCCAGTCAGTAAACGCAGACGTCTG-ATAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGAATTGGGCACCGTCCTCACTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGA--ATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTCTCAAGGTTGACCTCGGAT-----TTCGAGAAGGTCCGTGCACGCATGTCGTTTTTTAACCCCTC-TCGACTTCGGCGCTGCAGCGCTGCGGCGCACAGTCCGCCTTATCGCTTTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCT-AGCCTCGTCTGGG-TTCGGCAAAATGACCGCACTT-GGTTTTTTTGCGACCGGCGTCTGGCCGACGCG---CCTCCCCACTAGCGAAAAATGCTCTGACCACTCATGTACCGTCG---TACGAGCAAAG Lasiodiplodia_citricola_GU945354_GU945340 CGGC-TCGAC-TCTCCCACCC-TTTGTGAACGTACCTCTGTTGCTTTGGCG---GCTTCGG-----------------------------------------CCGCCAAAGGACCTTCAAACTCCAGTCAGTAAACGCAGACGTCTG-ATAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGAATTGGGCACCGTCCTCACTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGA--ATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTCTCAAGGTTGACCTCGGAT-----TTCGAGAAG-TGAGTGAAGATT-----TTCCCCAACCCCGC-TTGGCT------CTGCAGCGCTGCGGCGCACAGTCCGCCCTATCGCTTTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCT-AGCCTCGTCTGGG-TTCGGCAAAATGACCGCACTTGGGTTTTTTTGCGACCGGCGTCTGGCCGACGCG---CCTCCCCACTAGCGAAAAATGCTCTGACCACTCATGTACCGTCG---TACGAGCAAAG Lasiodiplodia_crassispora_DQ103550_EU673303 CGGC-TCGAC-TCTCCCACCC-TTTGTGAACACACCTCTGTTGCCTCGGCGGCCGCTCCGG-----------------------------------------CCGCCGAAGGACCTTCAAACTCCAGTCAGTAAACGCAGACGTCTG-ATAAACAAGTCAATGAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCTCACTGCGGACGCGCCTCGAAGACCTCGGCGGTGGCTGTTCGGCCCTCAAGCGTAGTAGA--ATACACCTCGCTTTGGAGCGGTCGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTCTCAAGGTTGACCTCGGAT-----TTCGAGAAGGCAAG-------------TTTCCCAATCCCGC-TTGGT--------TGCAGCGCTGCGGCGCACAGTCCGCCTTATCGCGTTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCT-AGTCTCGTCTGGG-TTCGGCAAAATCACCGCACTT-GG-TTTTTTGCGACCGGCGTCTGGCCGACGCG---CCTCCCCGCTAGCGAAAAATGCTCCGACCACTCATGTACCGTCG---TACGACCAGAG Lasiodiplodia_eqyptiacae_JN814397_JN814424 CGGC-TCGAC-TCTCCCACCC-TTTGTGAACGTACCTCTGTTGCTTTGGCG---GCTCCGG-----------------------------------------CCGCCAAAGGACCTTCAAACTCCAGTCAGTAAACGCAGACGTCTG-ATAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGAATTGGGCACCGTCCTCACTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGA--ATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTCTCAAGGTTGACCTCGGAT-----------------------------------CCCAACCCCGC-TTGGCT------CTGCAGCGCTGCGGCGCACAGTCCGCCTTATCGCTTTGGTGAGGGGCATTTTTCATGGTGGGGTTTGGCCCGCGCT-AGCCTCGTCTGGG-TTCGGCAAAATGACCGCACTT-GGTTTTTTTGCGACCGGCGTCTGGACGACGCG---CCTCCCCACTAGCGAAAAATGCTCTGACCACTCATGTACCATCG---TACGAGCAAAG Lasiodiplodia_gilanensis_GU945351_GU945342 CGGC-CCGAC-TCTCCCACCC-TTTGTGAACGTACCTCTGTTGCTTTGGCG---GCTCCGG-----------------------------------------CCGCCAAAGGACCTTCAAACTCCAGTCAGTAAACGCAGACGTCTG-ATAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGAATTGGGCACCGTCCTCACTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGA--ATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTCTCAAGGTTGACCTCGGAT-----TTCGAGAAGGTCCGTGCGCTCATTTTGTTTTTTAACCCCGC-TCGGCTTCAGCGCTGCAGCGCTGCGGCTCACAGTCCGCCTTATCGCGTTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCT-AGCCTCGTCTGGG-TTCGGCAAAATCACCGCACTT-GGTTTTTTTGCGACCGGCGTCTGGCCGACGCG---CCTCCCCACTAGCGAGAAATGCTCTGACCACTCATGTACCGTCG---TACGAGCAAAG Lasiodiplodia_gonubiensis_AY639595_DQ103566 CGGC-TCGAC-TCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCG---GCTCCGG-----------------------------------------CCGCCAAAGGACCTTCAAACTCCAGTCAGTAAACGCAGACGTCTG-AAATACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCTCCCTGGGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGA--ATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTCTCAAGGTTGACCTCGGAT----------GAAGGTCAGTA-------------CTCAAATTTTGC-CCGGC----------CAGCGCTGCGGCGCACAGTCCGGCTTCTCGCTCTAATGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCT-AAGCTCGTCTGGG-TTCGGCAAAATCACCGCACTT-GGTTTTTTTGCGACCGGCGTCTGGCCGATGCG---CCTCCCCACTAGCGAAGAATGCCCCGACCACTCATGTACCGTCG---TATGATCACAG Lasiodiplodia_hormozganensis_GU945355_GU945343 CGGC-TCGAC-TCTCCCACCC-TTTGTGAACGTACCTCTGTTGCTTTGGCG---GCTCCGG-----------------------------------------CCGCCAAAGGACCTTCAAACTCCAGTCAGTAAACGCAGACGTCTG-ATAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGAATTGGGCACCGTCCTCACTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGA--ATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTCTCAAGGTTGACCTCGGAT-----TTCGAGAAG-TGAGTGAAGATT-----TTCTCCAACCCCGCTTTGGCT------CTGCAGCGCTGCGGCGCACAGTCCGCCTTATCGCTTTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCT-AGCCTCGTCTGGG-TTCGGCAAAATGACCGCACTT-GGTTTTTTTGCGACCGGCGTCTGGCCGACGCG---CCTCCCCACTAGCGAAAAATGCTCTGACCACTCATGTACCGTCG---TACGAGCAAAG Lasiodiplodia_iraniensis_GU945346_GU945334 CGGC-TCGAC-TCTCCCACCC-TTTGTGAACGTACCTCTGTTGCTTTGGCG---GCTCCGG-----------------------------------------CCGCCAAAGGACCTCCAAACTCCAGTCAGTAAACGCAGACGTCTG-ATAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGAATTGGGCACCGTCCTCACTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGA--ATACACCTCGCTTTGGAGTGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTCTCAAGGTTGACCTCGGAT-----TTCGAGAAGGTCCGTGCGATGTTGTCGTTTTTTCATCCCTC-TCGCCTTCAGCGCTGCGGCGCAGCGGCGCACAGTCCGCCTTATCGCTTTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCT-AGTCTCGTCTGGG-TTCGGCAAAATCACCGCACTT-GGTTTTTTTGCGACCGGCGTCTGGCCGACGCG---CCTCCCCACTAGCGAAAAATGCTCTGACCACTCATGTACCGTCA---TACGAGCAAAG Lasiodiplodia_margaritacea_EU144050_EU144065 CGGC-TCGAC-TCTCCCACCC-TTTGTGAACGTACCTCTGTTGCTTTGGCG---GCTCCGG-----------------------------------------CCGCCAAAGGACCTTCAAACTCCAGTCAGTAAACGCAGACGTCTG-ATAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCTCACTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGA--ATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTCTCAAGGTTGACCTCGGAT-----TTCGAGAAGGTAAGAA-------GATTTTTCACAACCCCGC-TCGGG--------CGCAGCGCTGCGGCGCACAGTCCGCCTTATCGCTCTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCT-AGCCTCGTCTGGG-TTCGGCAAAATCACCGCACTT-GGTTTTTTTGCGACCGGCGTCTGGCCGACGCG---CCTCCCCACTAGCGAGAAATGTTCCGACCACTCATGTACCGTCG---TACGACCACAG Lasiodiplodia_mahajangana_FJ900597_FJ900643 CGGC-TCGAC-TCTCCCACCC-TTTGTGAACGTACCTCTGTTGCTTTGGCG---GCTTCGG-----------------------------------------CCGCCAAAGGACCTTCAAACTCCAGTCAGTAAACGCAGACGTCTG-ATAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGAATTGGGCACCGTCCTCACTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGA--ATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTC-----------------------TTCGAGAAGGTCCGTGCACGCATGTGGTTTTTTTACCCCTC-TCGACTT--------CGGCGCTGCGGCGCATAGTCCGCCTTATCGCTTTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCT-AGCCTCGTCTGGG-TTCGGCAAAATGACCGCACTT-GGTTTTTTTGCGACCGGCGTCTGGCCGACGCG---CCTCCCCACTAGCGAAAAATGCTCTGACCACTCATGTACCGTCG---TACGAGCAAAG Lasiodiplodia_missouriana_HQ288225_HQ288267 CGGC-TCGAC-TCTCCCACCC-TTTGTGAACGTACCTCTGTTGCTTTGGCG---GCTCCGG-----------------------------------------CCGCCAAAGGACCTCCAAACTCCAGTCAGTAAACGCAGACGTCTG-ATAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGAATTGGGCACCGTCCTCGCTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTCTTCAGCCCTCAAGCGTAGTAGA--ATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTCTCAAGGTTGACCTCGGAT---------------TCCGTGCGCTCATTTTGTTTTTTAACCCCGC-TCGGCTTCAGCGCTGCAGCGCTGCGGCTCACAGTCCGCCTTATCGCGTTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCT-AGCCTCGTCTGGG-TTCGGCAAAATCACCGCACTT-GGTTTTTTTGCGACCGGCGTCTGGCCGAGGCG---CCTCCCCACTAGCGAGAAATGCTCTGACCACTCATGTACCGTCG---TACGAGCAAAG Lasiodiplodia_parva_EF622083_EF622063 CGGC-TCGAC-TCTCCCACCC-TTTGTGAACGTACCTCTGTTGCTTTGGCG---GCTCCGG-----------------------------------------CCGCCAAAGGACCTTCAAACTCCAGTCAGTAAACGCAGACGTCTG-ATAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGAATTGGGCACCGTCCTCACTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGA--ATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTCTCAAGGTTGACCTCGGAT-----TTCGAGAAG-TGAGTGAAGATT-----TTCCCCAACCCCGC-CTGGCT------CTGCAGCGCTGCGGCGCACAGTCCGCCTTATCGCTTTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCT-AGCCTCGTCTGGG-TTCGGCAAAATGACCGCACTT-GGTTTTTTTGCGACCGGCGTCTGGCCGACGCG---CCTCCCCACTAGCGAAAAATGCTCTGACCACTCATGTACCGTCG---TACGAGCAAAG Lasiodiplodia_plurivora_EF445362_EF445395 CGGC-TCGAC-TCTCCCACCC-TTTGTGAACGTACCTCTGTTGCTTTGGCG---GCTCCGG-----------------------------------------CCGCCAAAGGACCTTCAAACTCCAGTCAGTAAACGCAGACGTCTG-ATAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGAATTGGGCACCGTCCTCACTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGA--ATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTCTCAAGGTTGACCTCGGAT-----TTCGAGAAGGTCAGTTTTCTCATTTTGTTTTTTAACCCCGC-TCGGCTTCAGCGCTGCGGCGCTGCGGCGCACAGTCCGCCTTATCGCCTTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCT-AGCCTCGTCTGGG-TTCGGCAAAATCACCGCACTT-GGTTTTTTTGCGACCGGCGTCTGGCCGACGCG---CCTTCCCACTAGCGAGAAATGCTCTGACCACTCATGTACCGTCGTCATACGAGCAAAG Lasiodiplodia_pseudotheobromae_EF622077_EF622057 CGGC-TCGAC-TCTCCCACCC-TTTGTGAACGTACCTCTGTTGCTTTGGCG---GCTCCGG-----------------------------------------CCGCCAAAGGACCTCCAAACTCCAGTCAGTAAACGCAGACGTCTG-ATAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGAATTGGGCACCGTCCTCACTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGA--ATACACCTCGCTTTGGAGTGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTCTCAAGGTTGACCTCGGAT-----TTCGAGAAG-TTCGTG--ATTTCCCCCCCTCCCAACCCCGC-TTGGCT------CTGTAGCGCTGCGGCGCACAGTCCGCCTTATCGCTCTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCT-AGCCTCGTCTGGG-TTCGGCAAAATGACCGCACTT-GGTTTTTTTGCGACCGGCGTCTGGCCGACGCG---CCTCCCCACTAGCGAAAAATGCTCTGGCCACTCATGTACCGTCG---TACGAGCAAAG Lasiodiplodia_rubropurpurea_DQ103553_EU673304 CGGC-TCGAC-TCTCCCACCC-TTTGTGAACGTACCTCTGTTGCTTTGGCG---GCTCCGG-----------------------------------------CCGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGCAGACGTCTG--AAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGCATTGGGCTCCGTCCTCACTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCGGCCCTCAAGCGTAGTAGA--AAACACCTCGCTTTGGAGCGGTCGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTCTCAAGGTTGACCTCGGAT-----TTTGAAAAAGTGCGTA---AGAAGACTTTACCCAACCCCGC-TCAGC--------TGCTGCGTTGCGGCGCACAGTCCGCCTTATCGCTCTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCT-AGCCTCGTCTGGG-TTCGGCAAAATCACCGCACTT-GGTTTTTTTGCGACCGGCGTCTGGCCGACGCG---CCTCCCCACTAGCCAAGAATGCTCCGACCACTCATGTACCGTCA---TACGATCACAC Lasiodiplodia_theobromae_AY640288_AY640258 CGGC-TCGAC-TCTCCCACCC-TTTGTGAACGTACCTCTGTTGCTTTGGCG---GCTCCGG-----------------------------------------CCGCCAAAGGACCTTCAAACTCCAGTCAGTAAACGCAGACGTCTG-ATAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGAATTGGGCACCGTCCTCACTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGA--ATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTCTCAAGGTTGACCTCGGAT-----TTCGAGAAGGTCCGTGCACGCATGTCGTTTTTTAACCCCTC-TCGACTTCGGCGCTGCAGCGCTGCGGCGCACAGTCCGCCTTATCGCTCTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCT-AGCCTCGTCTGGG-TTCGGCAAAATGACCGCACTT-GGTTTTTTTGCGACCGGCGTCTGGCCGACGCG---CCTCCCCACTAGCGAAAAATGCTCTGACCACTCATGTACCGTCG---TACGAGCAAAG Lasiodiplodia_venezuelensis_DQ103547_EU673305 CGGC-TCGAC-TCTCCCACCC-TTTGTGAACGTACCTCTGTTGCTTTGGCG---GCCCCGG-----------------------------------------CCGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGCAGACGTCTGAAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCACCGTCCTCACTGCGGACGCGCCTCGAAGACCTCGGCGGTGGCTGTTCGGCCCTCAAGCGTAGTAGA--ATACACCTCGCTTTGGAGCGGTCGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTCTCAAGGTTGACCTCGGAT-----TTCGAGAG--TAAGC------------CATTCCAACCCCGC-TTG---------CTGCAGCGCTGCGGCGCACAGTCCGTCTTATCGCTCTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCACGCGCT-AGCCTCGTCTGGG-TTCGGCAAAATCACCGCACTT-GGTTTTTTTGCGACCGGCGTCTGGCCGACACG---CCTCCCCACTAGCGAAAAATGCTCCGACCACTCATGTACCGTCA---TACGATCATAC Lasiodiplodia_viticola_HQ288227_HQ288269 CGGCTTCGACTTCTCCCACCCTTTTGTGAACGTACCTCTGTTGCTTTGGCG---GCTCCGG-----------------------------------------CCGCCAAAGGACCTCCAAACTCCAGTCAGTAAACGCAGACGTCTG-ATAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGAATTGGGCACCGTCCTCGCTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGA--ATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTCTCAAGGTTGACCTCGGAT---------------TCCGTGCACGCATGTCGTTTTTTAACCCCTC-TCGACTTCGGCGCTGCGGCGCTGCGGCGCACAGTCCGCCTTATCGCTTTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCT-AGCCTCGTCTGGG-TTCGGCAAAATGACCGCACTT-GGTTTTTTTGCGACCGGTGTCTGGCCGACGCG---CCTCCCCACTAGCGAAAAATGCTCTGACCACTCATGTATCGTCG---TACGAGCAATG Neofusicoccum_parvum_AY236943_AY236888 GCTCCGGCTCGACTCTCCCACCCTATGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTCCTCCGCACCGGCGCCCTTCGGGGGGCTGGCCAGCGCCCGCCAGAGGACCATAAAACTCCAGTCAGTGAACTTCGCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCCCCGTCCTCCACGGACGCGCCTTAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGCGCACGGCGTCGCCCGCCGGACGAACCTTTGAATTATTTCTCGAGAAGGTAAGAAAGTTTTTCCTTCCGCTGCACGCGCTGGGTGCCAGGTGCTGGGTTCCCGCACTCAATTTGCCTTATCGCTTCGGTGAGGGGCATTTTGGTGGTGGGGTTGGCCCGCGCTAAGCCTCGTTTGGGCTCGGCAAAATGTCCGCATCTGGTTTTTTTGCGACCGGCGTGCGACCGAAGCGCGCCCCTCGCCAGACACGCCACGCATGTGCGACCAGACGCTA-------------------------------------------------------------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 765; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 765; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 765; END; BEGIN TREES; Title Lasiodiplodia_ITS_TEF; ID 0163c13a72aa1; LINK Taxa = Taxa; TRANSLATE [0] 1 Lasiodiplodia_sp._PLM_590A, [1] 2 Lasiodiplodia_sp._PLM_758A, [2] 3 Lasiodiplodia_sp._PLM_789A, [3] 4 Lasiodiplodia_citricola_GU945354_GU945340, [4] 5 Lasiodiplodia_crassispora_DQ103550_EU673303, [5] 6 Lasiodiplodia_eqyptiacae_JN814397_JN814424, [6] 7 Lasiodiplodia_gilanensis_GU945351_GU945342, [7] 8 Lasiodiplodia_gonubiensis_AY639595_DQ103566, [8] 9 Lasiodiplodia_hormozganensis_GU945355_GU945343, [9] 10 Lasiodiplodia_iraniensis_GU945346_GU945334, [10] 11 Lasiodiplodia_margaritacea_EU144050_EU144065, [11] 12 Lasiodiplodia_mahajangana_FJ900597_FJ900643, [12] 13 Lasiodiplodia_missouriana_HQ288225_HQ288267, [13] 14 Lasiodiplodia_parva_EF622083_EF622063, [14] 15 Lasiodiplodia_plurivora_EF445362_EF445395, [15] 16 Lasiodiplodia_pseudotheobromae_EF622077_EF622057, [16] 17 Lasiodiplodia_rubropurpurea_DQ103553_EU673304, [17] 18 Lasiodiplodia_theobromae_AY640288_AY640258, [18] 19 Lasiodiplodia_venezuelensis_DQ103547_EU673305, [19] 20 Lasiodiplodia_viticola_HQ288227_HQ288269, [20] 21 Neofusicoccum_parvum_AY236943_AY236888; TREE Imported_tree_1 = (5,11,17,19,(8,21)[%bootstrapFrequency = 0.819 ],(4,6,9,14,(1,16)[%bootstrapFrequency = 0.993 ],(2,3,10,12,15,18,20,(7,13)[%bootstrapFrequency = 0.857 ])[%bootstrapFrequency = 0.715 ])[%bootstrapFrequency = 0.89 ])[% ] [% ] [% setBetweenBits = selected setBetweenDouble = bootstrapFrequency ]; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; getProject; tell It; setName 'Project of "Lasiodiplodia_ITS_TEF_Alignment.nexus"'; endTell; timeSaved 1556620540562; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1599269027626127071; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 814445488490278014; mqVersion 351; checksumv 0 3 2158169347 null getNumChars 765 numChars 765 getNumTaxa 21 numTaxa 21 short true bits 15 states 15 sumSquaresStatesOnly 306946.0 sumSquares 306946.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1028 666; setLocation 24 68; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #814445488490278014 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -72; setLocation 24 68; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.MatrixInfoTool.MatrixInfoTool.matrixInfo; endTell; setTool mesquite.charMatrices.MatrixInfoTool.MatrixInfoTool.matrixInfo; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; getInfoPanel; tell It; btspOpen true; apOpen true; fpOpen true; endTell; toggleInfoPanel on; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;