#NEXUS
[written Mon Jun 04 12:42:32 CEST 2018 by Mesquite  version 3.5 (build 888) at kl-15168/10.0.1.34]

BEGIN TAXA;
	TITLE Untitled_Block_of_Taxa;
	DIMENSIONS NTAX=28;
	TAXLABELS
		Toxoplasma_gondii_TGME49204400 Chromera_velia_Cvel9763 Vitrella_brassicaformis_Vbra12983 Neospora_caninum_NCLIV020840 Hammondia_hammondi_HHA204400 Eimeria_tenella_ETH00005270 Sarcocystis_neurona_SN302300385 Plasmodium_vivax_PVP010407900 Plasmodium_falciparum_PF3D70217100 Plasmodium_berghei_PBANKA0313800 Plasmodium_yoelii_PY17X0314300 Plasmodium_knowlesi_PKNH0403800 Plasmodium_chabaudi_PCHAS0315900 Theileria_annulata_TA18615 Theileria_parva_TP030569 Babesia_bovis_BBOVIII002130 Cryptosporidium_muris_CMU027630 Cryptosporidium_parvum_Cgd6610 Cryptosporidium_hominis_Chro.60082 Tetrahymena_thermophilia_XP001027692.2 Arabidopsis_thaliana_AT2G07698 Homo_sapiens_Hsa498 Mus_musculus_Mmu11946 Chlamydomonas_reinhardtii_XP001699641.1 Saccharomyces_cerevisiae_YBL099W Symbiodinum_minutum_symbB.v1.2.020623.t1 Symbiodinum_minutum_symbB.v1.2.031525.t1 Perkinsus_marinus_XP002780357.1 
	;

END;


BEGIN TREES;
	Title 'Trees from "1.F1alpha.treb"';
	ID 0163ca63e39a13;
	LINK Taxa = Untitled_Block_of_Taxa;
	TRANSLATE
[0] 		1 Toxoplasma_gondii_TGME49204400,
[1] 		2 Chromera_velia_Cvel9763,
[2] 		3 Vitrella_brassicaformis_Vbra12983,
[3] 		4 Neospora_caninum_NCLIV020840,
[4] 		5 Hammondia_hammondi_HHA204400,
[5] 		6 Eimeria_tenella_ETH00005270,
[6] 		7 Sarcocystis_neurona_SN302300385,
[7] 		8 Plasmodium_vivax_PVP010407900,
[8] 		9 Plasmodium_falciparum_PF3D70217100,
[9] 		10 Plasmodium_berghei_PBANKA0313800,
[10] 		11 Plasmodium_yoelii_PY17X0314300,
[11] 		12 Plasmodium_knowlesi_PKNH0403800,
[12] 		13 Plasmodium_chabaudi_PCHAS0315900,
[13] 		14 Theileria_annulata_TA18615,
[14] 		15 Theileria_parva_TP030569,
[15] 		16 Babesia_bovis_BBOVIII002130,
[16] 		17 Cryptosporidium_muris_CMU027630,
[17] 		18 Cryptosporidium_parvum_Cgd6610,
[18] 		19 Cryptosporidium_hominis_Chro.60082,
[19] 		20 Tetrahymena_thermophilia_XP001027692.2,
[20] 		21 Arabidopsis_thaliana_AT2G07698,
[21] 		22 Homo_sapiens_Hsa498,
[22] 		23 Mus_musculus_Mmu11946,
[23] 		24 Chlamydomonas_reinhardtii_XP001699641.1,
[24] 		25 Saccharomyces_cerevisiae_YBL099W,
[25] 		26 Symbiodinum_minutum_symbB.v1.2.020623.t1,
[26] 		27 Symbiodinum_minutum_symbB.v1.2.031525.t1,
[27] 		28 Perkinsus_marinus_XP002780357.1;
	TREE 'PAUP 1+' = ((((((1:0.01877,5:0.0291):0.00644,4:0.02633):0.04013,7:0.07987):0.04205,6:0.13968):0.02185,((2:0.10831,3:0.09927):0.02799,((26:0.0157,27:0.01733):0.09539,28:0.11979):0.02757):0.01211):0.00661,(((((8:0.03657,12:0.03227):0.03023,(9:0.05869,((10:0.00932,11:0.0071):0.00702,13:0.01305):0.03491):0.00914):0.1387,(18:0.01682,19:0.0233):0.28141):0.01249,17:0.1605):0.03012,((14:0.0211,15:0.02477):0.09067,16:0.10654):0.04058):0.00651,(((20:0.164,(22:0.01317,23:0.01214):0.11282):0.01134,25:0.16657):0.00665,(21:0.18979,24:0.20237):0.01392):0.00922)[% ] [%unrooted = on ];

END;


Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1528108952372;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 4181051697665410367;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState false false 100;
			setPopoutState 300;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 700 464;
			setLocation 8 23;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			desuppress;
		endTell;
		getEmployee  #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			showTaxa #4181051697665410367 #mesquite.lists.TaxonList.TaxonList;
			tell It;
				setTaxa #4181051697665410367;
				getWindow;
				tell It;
					useTargetValue off;
					setTargetValue ;
					newAssistant  #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 600 392;
					setLocation 8 23;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
					endTell;
				endTell;
				showWindow;
				getEmployee #mesquite.lists.ColorTaxon.ColorTaxon;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel;
				tell It;
					togglePanel off;
				endTell;
			endTell;
		endTell;
		getEmployee  #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord;
		tell It;
			makeTreeWindow #4181051697665410367  #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker;
			tell It;
				suppressEPCResponse;
				setTreeSource  #mesquite.trees.StoredTrees.StoredTrees;
				tell It;
					setTreeBlock 1;
					setTreeBlockID 0163ca63e39a13;
					toggleUseWeights off;
				endTell;
				setAssignedID 1856.1528108946893.8059801531144540206;
				getTreeWindow;
				tell It;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 600 392;
					setLocation 8 23;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
					endTell;
					setActive;
					getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator;
				tell It;
					suppress;
					setTreeDrawer  #mesquite.trees.SquareLineTree.SquareLineTree;
					tell It;
						setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard;
						tell It;
							branchLengthsToggle off;
							toggleScale on;
							toggleBroadScale off;
							toggleCenter on;
							toggleEven on;
							setFixedTaxonDistance 0;
						endTell;
						setEdgeWidth 4;
						showEdgeLines on;
						orientUp;
					endTell;
					setBackground White;
					setBranchColor Black;
					showNodeNumbers off;
					showBranchColors on;
					labelBranchLengths off;
					centerBrLenLabels on;
					showBrLensUnspecified on;
					showBrLenLabelsOnTerminals on;
					setBrLenLabelColor 0 0 255;
					setNumBrLenDecimals 6;
					desuppress;
					getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames;
					tell It;
						setColor Black;
						toggleColorPartition off;
						toggleColorAssigned on;
						toggleShadePartition off;
						toggleShowFootnotes on;
						toggleNodeLabels on;
						toggleCenterNodeNames off;
						toggleShowNames on;
						namesAngle ?;
					endTell;
				endTell;
					setTreeNumber 1;
					setDrawingSizeMode 0;
					toggleLegendFloat on;
					scale 0;
					toggleTextOnTree off;
					togglePrintName on;
					showWindow;
				endTell;
				desuppressEPCResponse;
				getEmployee #mesquite.trees.ColorBranches.ColorBranches;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.ornamental.BranchNotes.BranchNotes;
				tell It;
					setAlwaysOn off;
				endTell;
				getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition;
				tell It;
					colorByPartition off;
				endTell;
				getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles;
				tell It;
					setOn on;
					toggleShow consensusFrequency;
					toggleShow bootstrapFrequency;
					toggleShow posteriorProbability;
					toggleShow consensusFrequency;
					toggleShow posteriorProbability;
					toggleShow bootstrapFrequency;
					setDigits 4;
					setThreshold ?;
					writeAsPercentage off;
					toggleCentred off;
					toggleHorizontal on;
					toggleWhiteEdges on;
					toggleShowOnTerminals on;
					setFontSize 10;
					setOffset 0  0;
				endTell;
				getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings;
				tell It;
					setOn on;
					toggleCentred on;
					toggleHorizontal on;
					setFontSize 10;
					setOffset 0  0;
					toggleShowOnTerminals on;
				endTell;
				getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		endTell;
end;