#NEXUS
[written Mon Jun 04 12:43:41 CEST 2018 by Mesquite  version 3.5 (build 888) at kl-15168/10.0.1.34]

BEGIN TAXA;
	TITLE Untitled_Block_of_Taxa;
	DIMENSIONS NTAX=26;
	TAXLABELS
		Toxoplasma_gondii_TGME49231910 Chromera_velia_Cvel10158 Vitrella_brassicaformis_Vbra15179 Neospora_caninum_NCLIV031920 Hammondia_hammondi_HHA231910 Eimeria_tenella_ETH00017240 Sarcocystis_neurona_SN300700860 Plasmodium_vivax_PVP011412300 Plasmodium_falciparum_PF3D71311300 Plasmodium_berghei_PBANKA1409800 Plasmodium_yoelii_PY17X1411600 Plasmodium_knowlesi_PKNH1411700 Plasmodium_chabaudi_PCHAS1411700 Theileria_annulata_TA19395 Theileria_parva_TP010201 Babesia_bovis_BBOVIV005350 Cryptosporidium_muris_CMU017340 Tetrahymena_thermophilia_XP001010761.1 Arabidopsis_thaliana_AT2G33040 Homo_sapiens_Hsa509 Mus_musculus_Mmu11949 Chlamydomonas_reinhardtii_XP001700627.1 Saccharomyces_cerevisiae_YBR039W Symbiodinum_minutum_symbB.v1.2.004028.t1 Symbiodinum_minutum_symbB.v1.2.004029.t1 Perkinsus_marinus_XP002778693.1 
	;

END;


BEGIN TREES;
	Title 'Trees from "5.F1gamma.treb"';
	ID 0163ca65035f20;
	LINK Taxa = Untitled_Block_of_Taxa;
	TRANSLATE
[0] 		1 Toxoplasma_gondii_TGME49231910,
[1] 		2 Chromera_velia_Cvel10158,
[2] 		3 Vitrella_brassicaformis_Vbra15179,
[3] 		4 Neospora_caninum_NCLIV031920,
[4] 		5 Hammondia_hammondi_HHA231910,
[5] 		6 Eimeria_tenella_ETH00017240,
[6] 		7 Sarcocystis_neurona_SN300700860,
[7] 		8 Plasmodium_vivax_PVP011412300,
[8] 		9 Plasmodium_falciparum_PF3D71311300,
[9] 		10 Plasmodium_berghei_PBANKA1409800,
[10] 		11 Plasmodium_yoelii_PY17X1411600,
[11] 		12 Plasmodium_knowlesi_PKNH1411700,
[12] 		13 Plasmodium_chabaudi_PCHAS1411700,
[13] 		14 Theileria_annulata_TA19395,
[14] 		15 Theileria_parva_TP010201,
[15] 		16 Babesia_bovis_BBOVIV005350,
[16] 		17 Cryptosporidium_muris_CMU017340,
[17] 		18 Tetrahymena_thermophilia_XP001010761.1,
[18] 		19 Arabidopsis_thaliana_AT2G33040,
[19] 		20 Homo_sapiens_Hsa509,
[20] 		21 Mus_musculus_Mmu11949,
[21] 		22 Chlamydomonas_reinhardtii_XP001700627.1,
[22] 		23 Saccharomyces_cerevisiae_YBR039W,
[23] 		24 Symbiodinum_minutum_symbB.v1.2.004028.t1,
[24] 		25 Symbiodinum_minutum_symbB.v1.2.004029.t1,
[25] 		26 Perkinsus_marinus_XP002778693.1;
	TREE 'PAUP 1+' = ((((((((1:0.01248,5:0.01618):0.0194,4:0.03474):0.07541,7:0.11488):0.08608,6:0.31197):0.02508,((2:0.1917,3:0.18578):0.02655,26:0.23444):0.01052):0.01966,((((8:0.01997,12:0.01528):0.06328,((10:0.01106,11:0.01109):0.00697,13:0.01518):0.07515):0.01585,9:0.10615):0.15858,((14:0.01697,15:0.01488):0.14039,16:0.16008):0.07956):0.02028):0.02213,18:0.31731):0.01297,(17:0.33918,((19:0.26587,22:0.26298):0.03721,((20:0.04548,21:0.04176):0.22201,23:0.32169):0.04397):0.01354):0.00573,(24:0.00405,25:0.00546):0.39409)[% ] [%unrooted = on ];

END;


Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1528109021089;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 823487165214680757;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState false false 100;
			setPopoutState 300;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 700 442;
			setLocation 8 23;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			desuppress;
		endTell;
		getEmployee  #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			showTaxa #823487165214680757 #mesquite.lists.TaxonList.TaxonList;
			tell It;
				setTaxa #823487165214680757;
				getWindow;
				tell It;
					useTargetValue off;
					setTargetValue ;
					newAssistant  #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 600 370;
					setLocation 8 23;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
					endTell;
				endTell;
				showWindow;
				getEmployee #mesquite.lists.ColorTaxon.ColorTaxon;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel;
				tell It;
					togglePanel off;
				endTell;
			endTell;
		endTell;
		getEmployee  #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord;
		tell It;
			makeTreeWindow #823487165214680757  #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker;
			tell It;
				suppressEPCResponse;
				setTreeSource  #mesquite.trees.StoredTrees.StoredTrees;
				tell It;
					setTreeBlock 1;
					setTreeBlockID 0163ca65035f20;
					toggleUseWeights off;
				endTell;
				setAssignedID 2377.1528109017602.4309718877330669418;
				getTreeWindow;
				tell It;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 600 370;
					setLocation 8 23;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
					endTell;
					setActive;
					getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator;
				tell It;
					suppress;
					setTreeDrawer  #mesquite.trees.SquareLineTree.SquareLineTree;
					tell It;
						setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard;
						tell It;
							branchLengthsToggle off;
							toggleScale on;
							toggleBroadScale off;
							toggleCenter on;
							toggleEven on;
							setFixedTaxonDistance 0;
						endTell;
						setEdgeWidth 4;
						showEdgeLines on;
						orientUp;
					endTell;
					setBackground White;
					setBranchColor Black;
					showNodeNumbers off;
					showBranchColors on;
					labelBranchLengths off;
					centerBrLenLabels on;
					showBrLensUnspecified on;
					showBrLenLabelsOnTerminals on;
					setBrLenLabelColor 0 0 255;
					setNumBrLenDecimals 6;
					desuppress;
					getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames;
					tell It;
						setColor Black;
						toggleColorPartition off;
						toggleColorAssigned on;
						toggleShadePartition off;
						toggleShowFootnotes on;
						toggleNodeLabels on;
						toggleCenterNodeNames off;
						toggleShowNames on;
						namesAngle ?;
					endTell;
				endTell;
					setTreeNumber 1;
					setDrawingSizeMode 0;
					toggleLegendFloat on;
					scale 0;
					toggleTextOnTree off;
					togglePrintName on;
					showWindow;
				endTell;
				desuppressEPCResponse;
				getEmployee #mesquite.trees.ColorBranches.ColorBranches;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.ornamental.BranchNotes.BranchNotes;
				tell It;
					setAlwaysOn off;
				endTell;
				getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition;
				tell It;
					colorByPartition off;
				endTell;
				getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles;
				tell It;
					setOn on;
					toggleShow consensusFrequency;
					toggleShow bootstrapFrequency;
					toggleShow posteriorProbability;
					toggleShow consensusFrequency;
					toggleShow posteriorProbability;
					toggleShow bootstrapFrequency;
					setDigits 4;
					setThreshold ?;
					writeAsPercentage off;
					toggleCentred off;
					toggleHorizontal on;
					toggleWhiteEdges on;
					toggleShowOnTerminals on;
					setFontSize 10;
					setOffset 0  0;
				endTell;
				getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings;
				tell It;
					setOn on;
					toggleCentred on;
					toggleHorizontal on;
					setFontSize 10;
					setOffset 0  0;
					toggleShowOnTerminals on;
				endTell;
				getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		endTell;
end;