#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=25; TAXLABELS Arrhenia_epichysicum_U66442 Arrhenia_lobata_U66429 Lichenomphalia_altoandina_KT371535 Lichenomphalia_hudsoniana_EU118645 Lichenomphalia_umbellifera_GU811030 Lichenomphalia_umbellifera_GU811019 Lichenomphalia_umbellifera_GU811037 Lichenomphalia_umbellifera_U66445 Lichenomphalia_grisella_U66454 Lichenomphalia_meridionalis_MF571562 Lichenomphalia_meridionalis_MF571560 Lichenomphalia_meridionalis_MF571559 Lichenomphalia_meridionalis_MF571561 Lichenomphalia_meridionalis_MF571563 'Lichenomphalia meridionalis YO_6978F_LR0R_LR5' 'Lichenomphalia meridionalis S_255_FB2_LR0R_LR5' 'Lichenomphalia meridionalis S_270_FB1_con_LR0R_LR5' Lichenomphalia_oreades_U66443 Lichenomphalia_alpina_U66447 Lichenomphalia_alpina_GU811048 Lichenomphalia_alpina_GU811051 Lichenomphalia_hudsoniana_U66446 Lichenomphalia_hudsoniana_GU811054 Lichenomphalia_lobata_AY542866 Lichenomphalia_lobata_AY542867 ; END; BEGIN CHARACTERS; TITLE Lichenomphalia_LSU_25x465; DIMENSIONS NCHAR=465; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Arrhenia_epichysicum_U66442 aatctggcagccccctgtccgagttgtatctagagaagtgttaccgtgctggccgtgtacaagtctcttggaacagagcgtcatagagggtgagaatcccgtctttgacacggactaccagtgcattgtgatgcgctctcacgagtcgagttgttgggaatgcagctcaaaatgggtggtaaattccatctaaagctaaatattggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttgaagtcagtcgcgttggccggggatcaaccttagttggagcacttcctggttgacgggtcagcatcaattttgatcgttggataaagcgagggaatgtggcatctttataccttttttgcacacggttgggattgaggaactcagcacgccgcaggccggg Arrhenia_lobata_U66429 aatctggcaggtttctgtccgagttgtatctagagaagtgttaccgcgctggccgtgtacaagtctcttggaatagagcgtcatagagggtgagaatcccgtctttgccacggactgccagtgcattgtgatgcgctctcacgagtcgagttgttgggaatgcagctcaaaatgggtggtaaactccatctaaagctaaatattggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttgaagtcagtcgcgttcgctggggatcaaccttagttggagcacttcccagttgacgggtcagcatgagttttgactgttggataaagctggggaatgtggcatctttatacctctgttgcacacagttgggattgaggaactcagcacgccgcaggccggg Lichenomphalia_altoandina_KT371535 aatctggtggtcttccatccgagttgtatctagagaagtgctaccgcgctggccgtgtacaagtctcttggaacagagcgtcatagagggtgagaatcccgtctctgacacgggcttccagtgctttgtggtgtgctctcaagagtcgagttgttgggaatgcagctcaaaatgggtggtaaactccatctaaagctaaatattggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttgaagtcagtcgcgttggtagaggatcaacctgggtgggagcacttctctgttgacgggtcagcatcaattttgaccggtggataaggttggggaatgtggcatccttatacccctgtcgcactcggttgggattgaggaactcagcacgccgcaggccggg Lichenomphalia_hudsoniana_EU118645 aatctggtggtttcccatccgagttgtatctagagaagtgctaccgcgctggccgtgtacaagtctcttggaacagtgcgtcatagagggtgagaatcccgtctctgacacgggcttccagtgctttgtggtgcgctctcaagagtcgagttgttgggaatgcagctcaaaatgggtggtaaactccatctaaagctaaatattggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttgaagtcagtcgcgttggcggaggatcaacctgggtgggagcacttctctttcgacgggtcagcatcaattttgaccggtggataaggttgaggaatgtggcatccttatacccttgtcgcactcggttgggattgaggaactcagcacgccgcaggccggg Lichenomphalia_umbellifera_GU811030 aatctggtggtttcccatccgagttgtatctagagaagtgctaccgcgctggccgtgtacaagtctcttggaacagtgcgtcatagagggtgagaatcccgtctctgacacgggcttccagtgctttgtggtgcgctctcaagagtcgagttgttgggaatgcagctcaaaatgggtggtaaactccatctaaagctaaatattggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttgaagtcagtcgcgttggcggaggatcaacctgggtgggagcacttctctttcgacgggtcagcatcaattttgaccggtggataaggttgaggaatgtggcatccttatacccttgtcgcactcggttgggattgaggaactcagcacgccgcaggccggg Lichenomphalia_umbellifera_GU811019 aatctggtggtttcccatccgagttgtatctagagaagtgctaccgcgctggccgtgtacaagtctcttggaacagtgcgtcatagagggtgagaatcccgtctctgacacgggcttccagtgctttgtggtgcgctctcaagagtcgagttgttgggaatgcagctcaaaatgggtggtaaactccatctaaagctaaatattggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttgaagtcagtcgcgttggcggaggatcaacctgggtgggagcacttctctttcgacgggtcagcatcaattttgaccggtggataaggttgaggaatgtggcatccttatacccttgtcgcactcggttgggattgaggaactcagcacgccgcaggccggg Lichenomphalia_umbellifera_GU811037 aatctggtggtttcccatccgagttgtatctagagaagtgctaccgcgctggccgtgtacaagtctcttggaacagtgcgtcatagagggtgagaatcccgtctctgacacgggcttccagtgctttgtggtgcgctctcaagagtcgagttgttgggaatgcagctcaaaatgggtggtaaactccatctaaagctaaatattggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttgaagtcagtcgcgttggcggaggatcaacctgggtgggagcacttctctttcgacgggtcagcatcaattttgaccggtggataaggttgaggaatgtggcatccttatacccttgtcgcactcggttgggattgaggaactcagcacgccgcaggccggg Lichenomphalia_umbellifera_U66445 aatctggtggtttcccatccgagttgtatctagagaagtgctaccgcgctggccgtgtacaagtctcttggaacagtgcgtcatagagggtgagaatcccgtctctgacacgggcttccagtgctttgtggtgcgctctcaagagtcgagttgttgggaatgcagctcaaaatgggtggtaaactccatctaaagctaaatattggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttgaagtcagtcgcgttggcggaggatcaacctgggtgggagcacttctctttcgacgggtcagcatcaattttgaccggtggataaggttgaggaatgtggcatccttatacccttgtcgcactcggttgggattgaggaactcagcacgccgcaggccggg Lichenomphalia_grisella_U66454 aatctggcatccctgtgtccgagttgtaattagagaagcgtcgccgcaccggccgtgtacaagtctcttggaaaagggcatcatagagggtgagaatcccgtctttgacacggagccccggggcattgtggcgcgctctcacgagtcgagttgttgggattgcagctcaaaatgggtggtaaattccatctaaagctaaatattggggagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttcgagtcagtcgcgtcggccggggatcaacccgtgcgggggcactgtccggtggacgggtcagcatcgattttgaccgtcggagagttctggggaatgtggcatctttatacccctgttggacgtggtcgggatcgaggaactcagcacgccgcaggccggg Lichenomphalia_meridionalis_MF571562 aatctggcggcctctcgtccgagttgtaattagagaagcgtcgccgcaccggccgtgtacaagtctcttggaaaagggcatcgtagagggtgagaatcccgtctttgacacggagccccggggcattgtgacgcgctctcacgagtcgagttgttgggattgcagctcaaaatgggtggtaaattccatctaaagctaaatattggggagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttcaagtcagtcgcgtcggccggggatcaacccgtgcgggggcattgtccggtggacgggtcagcatcgattttgaccgtcggagcattccggggaaggtggcatctttataccctcgttggacacggtggggatcgaggaactcagcacgccgcaggccggg Lichenomphalia_meridionalis_MF571560 aatctggcggcctctcgtccgagttgtaattagagaagcgtcgccgcaccggccgtgtacaagtctcttggaaaagggcatcgtagagggtgagaatcccgtctttgacacggagccccggggcattgtgacgcgctctcacgagtcgagttgttgggattgcagctcaaaatgggtggtaaattccatctaaagctaaatattggggagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttcgagtcagtcgcgtcggccggggatcaacccgtgcgggggcattgtccggtggacgggtcagcatcgattttgagcgtcggagcattccggggaaggtggcatctttataccctcgttggacacggttgggatcgaggaactcagcacgccgcaggccggg Lichenomphalia_meridionalis_MF571559 aatctggcggcctctcgtccgagttgtaattagagaagcgtcgccgcaccggccgtgtacaagtctcttggaaaagggcatcgtagagggtgagaatcccgtctttgacacggagccccggggcattgtgacgcgctctcacgagtcgagttgttgggattgcagctcaaaatgggtggtaaattccatctaaagctaaatattggggagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttcgagtcagtcgcgtcggccggggatcaacccgtgcgggggcattgtccggtggacgggtcagcatcgattttgagcgtcggagcattccggggaaggtggcatctttataccctcgttggacacggttgggatcgaggaactcagcacgccgcaggccggg Lichenomphalia_meridionalis_MF571561 aatctggcggcctctcgtccgagttgtaattagagaagcgtcgccgcaccggccgtgtacaagtctcttggaaaagggcatcgtagagggtgagaatcccgtctttgacacggagccccggggcattgtgacgcgctctcacgagtcgagttgttgggattgcagctcaaaatgggtggtaaattccatctaaagctaaatattggggagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttcgagtcagtcgcgtcggccggggatcaacccgtgcgggggcattgtccggtggacgggtcagcatcgattttgagcgtcggagcattccggggaaggtggcatctttataccctcgttggacacggttgggatcgaggaactcagcacgccgcaggccggg Lichenomphalia_meridionalis_MF571563 aatctggcggcctctcgtccgagttgtaattagagaagcgtcgccgcaccggccgtgtacaagtctcttggaaaagggcatcgtagagggtgagaatcccgtctttgacacggagccccggggcattgtgacgcgctctcacgagtcgagttgttgggattgcagctcaaaatgggtggtaaattccatctaaagctaaatattggggagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttcgagtcagtcgcgtcggccggggatcaacccgtgcgggggcattgtccggtggacgggtcagcatcgattttgagcgtcggagcattccggggaaggtggcatctttataccctcgttggacacggttgggatcgaggaactcagcacgccgcaggccggg 'Lichenomphalia meridionalis YO_6978F_LR0R_LR5' aatctggcggcctctcgtccgagttgtaattagagaagcgtcgccgcaccggccgtgtacaagtctcttggaaaagggcatcgtagagggtgagaatcccgtctttgacacggagccccggggcattgtgacgtgctctcacgagtcgagttgttgggattgcagctcaaaatgggtggtaaattccatctaaagctaaatattggggagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttcgagtcagtcgcgtcggccggggatcaacccgtgcgggggcattgtccggtggacgggtcagcatcgattttgaccgtcggagcattccggggaaggtggcatctttataccctcgttggacacggtcgggatcgaggaactcagcacgccgcaggccggg 'Lichenomphalia meridionalis S_255_FB2_LR0R_LR5' aatctggcggcctctcgtccgagttgtaattagagaagcgtcgccgcaccggccgtgtacaagtctcttggaaaagggcatcgtagagggtgagaatcccgtctttgacacggagccccggggcattgtgacgtgctctcacgagtcgagttgttgggattgcagctcaaaatgggtggtaaattccatctaaagctaaatattggggagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttcgagtcagtcgcgtcggccggggatcaacccgtgcgggggcattgtccggtggacgggtcagcatcgattttgaccgtcggagcattccggggaaggtggcatctttataccctcgttggacacggttgggatcgaggaactcagcacgccgcaggccggg 'Lichenomphalia meridionalis S_270_FB1_con_LR0R_LR5' aatctggcggcctgtcgtccgagttgtaattagagaagcgtcgccgcaccggccgtgtacaagtctcttggaaaagggcatcgtagagggtgagaatcccgtctttgacacggagccccggggcattgtgacgtgctctcacgagtcgagttgttgggattgcagctcaaaatgggtggtaaattccatctaaagctaaatattggggagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaattgttgaaagggaaacacttcgagtcagtcgcgtcggccggggatcaacccgtgcgggggcattgtccggtggacgggtcagcatcgattttgaccgtcggagcattccggggaaggtggcatctttataccctcgttggacacggttgggatcgaggaactcagcacgccgcaggccggg Lichenomphalia_oreades_U66443 aatctggcggccgttcgtccgagttgtaattagagaagcgtcgccgcaccggccgtgtacaagtctcttggaaaagggcatcatagagggtgagaatcccgtctttgacacggagacccggggcatcgtgatgcgctctcaagagtcgagttgttgggattgcagctcaaaacgggtggtaaattccatctaaagctaaatattggggagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttcgagtcagtcgcgtcggccggggatcaacctgcgcaggggcactttccggtcgacgggtcagcatcgatttggaccgtcggagaattcgagggaaggtggcatccttatacctctcttggacgcggtcgggatcgaggaactcagcacgccgcaggccggg Lichenomphalia_alpina_U66447 aatctggcggtcctccgtccgagttgtacctagagaagcgttaccgcgctggccgtgtacaagtctcttggaaaagagcatcatagagggtgacaatcccgtctttgacacggatccccagggctttgtgatccgctctcatgagtcgagttgttgggaatgcagctcaaaatgggtggtaaattccatctaaagctaaatacaggggagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttcaagtcagtcacattggttggggatcaacttgggcaggagcacttcccgcccaatgggtcagcatcaattttgaccattggataaggtcaaggaatgtggcatccttatacccttgttgcacacggttgggattgaggaactcagcacgccttaggccggg Lichenomphalia_alpina_GU811048 aatctggcggtcctccgtccgagttgtacctagagaagcgttaccgcgctggccgtgtacaagtctcttggaaaagagcatcatagagggtgacaatcccgtctttgacacggatccccagggctttgtgatccgctctcatgagtcgagttgttgggaatgcagctcaaaatgggtggtaaattccatctaaagctaaatacaggggagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttcaagtcagtcacattggttggggatcaacttgggcaggagcacttcccgcccaatgggtcagcatcaattttgaccattggataaggtcaaggaatgtggcatccttatacccttgttgcacacggttgggattgaggaactcagcacgccttaggccggg Lichenomphalia_alpina_GU811051 aatctggcggtcctccgtccgagttgtacctagagaagcgttaccgcgctggccgtgtacaagtctcttggaaaagagcatcatagagggtgacaatcccgtctttgacacggatccccagggctttgtgatccgctctcatgagtcgagttgttgggaatgcagctcaaaatgggtggtaaattccatctaaagctaaatacaggggagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttcaagtcagtcacattggttggggatcaacttgggcaggagcacttcccgcccaatgggtcagcatcaattttgaccattggataaggtcaaggaatgtggcatccttatacccttgttgcacacggttgggattgaggaactcagcacgccttaggccggg Lichenomphalia_hudsoniana_U66446 aatctggcagtcctctgtccgagttgtatctagagaagcgttaccgcgttggccgtgtacaagtctcttggaaaagagcattatagagggtgagaatcccgtctttgacacggactgccaaggcattgtgatgcgctctcatgagtcgagttgttgggaatgcagctcaaaatgggtggtaaattccatctaaagctaaatattggggagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttcaagtcagtcgcgtttgttggggatcaacctgggtgggagcatttcctggcaggcgggtcagcatcagttttgatcgttggccaaggtcagggaatgtgacatctttatacctcggtcgcacacggttgggattgaggaactcagcacgccttaggccgag Lichenomphalia_hudsoniana_GU811054 aatctggcagtcctctgtccgagttgtatctagagaagcgttaccgcgttggccgtgtacaagtctcttggaaaagagcattatagagggtgagaatcccgtctttgacacggactgccaaggcattgtgatgcgctctcatgagtcgagttgttgggaatgcagctcaaaatgggtggtaaattccatctaaagctaaatattggggagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttcaagtcagtcgcgtttgttggggatcaacctgggtgggagcatttcctggcaggcgggtcagcatcagttttgatcgttggccaaggtcagggaatgtgacatctttatacctcggtcgcacacggttgggattgaggaactcagcacgccttaggccgag Lichenomphalia_lobata_AY542866 aatctggcggtcctccgtccgagttgtacctagagaagcgttaccgcgctggccgtgtacaagtctcttggaaaagagcatcatagagggtgacaatcccgtctttgacacggatcgccagggcttcaggatgcgctctcatgagtcgagttgttgggaatgcagctcaaaacgggtggtaaattccatctaaagctaaatacaggggagagaccgatagcgcacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttcaagtcagtcgcattggtcggggatcagcctgcaatggtgcacttcccggccaatgggtcagcatcaattttgaccgttggataaggtcagggaacgtggcaatcaccttcccttgttgcacacggttgggattgaggaactcagcacgccttatggtcgg Lichenomphalia_lobata_AY542867 aatctggcggtcctccgtccgagttgtacctagagaagcgttaccgcgctggccgtgtacaagtctcttggaaaagagcatcatagagggtgacaatcccgtctttgacacggatcgccagggcttcaggatgcgctctcatgagtcgagttgttgggaatgcagctcaaaacgggtggtaaattccatctaaagctaaatacaggggagagaccgatagcgcacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttcaagtcagtcgcattggtcggggatcagcctgcaatggtgcacttcccggccaatgggtcagcatcaattttgaccgttggataaggtcagggaacgtggcaatcaccttcccttgttgcacacggttgggattgaggaactcagcacgccttatggtcgg ; END; BEGIN TREES; Title Lichenomphalia_LSU_25x465; LINK Taxa = Taxa; TRANSLATE [0] 1 Arrhenia_epichysicum_U66442, [1] 2 Arrhenia_lobata_U66429, [2] 3 Lichenomphalia_altoandina_KT371535, [3] 4 Lichenomphalia_hudsoniana_EU118645, [4] 5 Lichenomphalia_umbellifera_GU811030, [5] 6 Lichenomphalia_umbellifera_GU811019, [6] 7 Lichenomphalia_umbellifera_GU811037, [7] 8 Lichenomphalia_umbellifera_U66445, [8] 9 Lichenomphalia_grisella_U66454, [9] 10 Lichenomphalia_meridionalis_MF571562, [10] 11 Lichenomphalia_meridionalis_MF571560, [11] 12 Lichenomphalia_meridionalis_MF571559, [12] 13 Lichenomphalia_meridionalis_MF571561, [13] 14 Lichenomphalia_meridionalis_MF571563, [14] 15 'Lichenomphalia meridionalis YO_6978F_LR0R_LR5', [15] 16 'Lichenomphalia meridionalis S_255_FB2_LR0R_LR5', [16] 17 'Lichenomphalia meridionalis S_270_FB1_con_LR0R_LR5', [17] 18 Lichenomphalia_oreades_U66443, [18] 19 Lichenomphalia_alpina_U66447, [19] 20 Lichenomphalia_alpina_GU811048, [20] 21 Lichenomphalia_alpina_GU811051, [21] 22 Lichenomphalia_hudsoniana_U66446, [22] 23 Lichenomphalia_hudsoniana_GU811054, [23] 24 Lichenomphalia_lobata_AY542866, [24] 25 Lichenomphalia_lobata_AY542867; TREE tree_1 = ((1:0.022866,2:0.033412):0.010396,((3:0.001831,(8:0.000001,((4:0.000001,5:0.000001):0.000001,(6:0.000001,7:0.000001):0.000001):0.000001):0.02132):0.059719,(((22:0.000001,23:0.000001):0.052973,((24:0.000001,25:0.000001):0.065357,(20:0.000001,(19:0.000001,21:0.000001):0.000001):0.01876):0.043124):0.009321,(18:0.033347,(9:0.023284,(10:0.004573,((15:0.002258,(16:0.000001,17:0.004581):0.000001):0.002256,(14:0.000001,(13:0.000001,(11:0.000001,12:0.000001):0.000001):0.000001):0.002283):0.000001):0.021134):0.014452):0.099218):0.025328):0.010396); END;