#NEXUS [written Tue Mar 26 08:14:38 ECT 2019 by Mesquite version 3.51 (build 898) at Charlie-Barness-MacBook-Pro.local/192.168.1.4] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=21; TAXLABELS Hygrocybe_rodomaculata_MK684225 Uncultured_fungus_GU174320 Hygrocybe_punicea_HM020682 Hygrocybe_sp_HM020686 Hygrocybe_sp_HM020687 Hygrocybe_reidii_MH562042 Uncultured_Hygrocybe_HQ022125 Hygrocybe_sp_HM020688 Hygrocybe_reidii_MH211855 Hygrocybe_aff_reidii_KF291196 Hygrocybe_reidii_MH211775 Hygrocybe_reidii_MH211795 Uncultured_Hygrocybe_JQ347152 Uncultured_Basidiomycota_AY969777 Hygrocybe_reidii_KF291194 Hygrocybe_cf_cantharellus_HM020689 Hygrocybe_reidii_KF291195 Hygrocybe_xanthochroa_EU784357 Hygrocybe_reidii_EU784347 Hygrocybe_reidii_EU784348 Hygrocybe_reidii_KF291158 ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "H rodomaculata Treebase ML tree.nex"'; DIMENSIONS NCHAR=643; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Hygrocybe_rodomaculata_MK684225 ATGAAAC-TTCA-AGGATGTTGCTGG-CCCTTTCTGCGAGG-------AGCATGTGCACTTCTTGAACATTCTGACCCATTCATCCCCCCTGTGCA-CCTTTTGTAGGCCTCGGAGACCACCGCTCTTTGAGGCCTATGCCATTATTATTACCTTACAAACTCTAGTCGATTGAATG-TCCTGTAACAAGTAAACCTGGATCTTTCTAGGTTTAAAAGTAACCCAATACAACTTTCAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACCTTGCGCCTCTTGGTATTCCGAGGGGTATGCCTGTTTGAGTGTCATTGAATTCTCAACTTGGCCCCGAGTTTGTTCTTGGAGCTCAAGCTTGGATTTGGAGTGTGCTGG-TCCCTACAATGTGGGCGGTCGGCTCCTCTGAAAAGTATTA--GCGACGAAATCCTTTCA-AAGGTTTGGCCCCCAATTGCGCTGTGGCATTGATAACAGTTGTCTATGTCTCACTGT---GGGGGAGTATGACCCAAACTTGGGGTGTTTTCGCTTACAATTGTCCCCTTCGT-GGGGACAAAGGCTCACCTTGA Uncultured_fungus_GU174320 ACGAAACGCTCA-GGGATGTTGCTGG-CCCTTTCTGCGAAG-------GGCATGTGCACTCCTTGAACATTCTGACCCTTCA----CCCCTGTGCACCCTTTTGTAGGCTTCAGAGG-GACCACTCTTTGGGGCCTATGTCATCATTAC--ATTTACAAACTCTAGTCGATCGAATGTTCTTGTAACAAGTAAACCTGGAGCTTTCTAGGTTTAAAAGTAACCCAATACAACTTTCAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTGAATTCTCAACTTGG-CCCGAGTTTGCTCTCGGAGCTCAAGCTTGGATTTGGAGTGTGCTGG-TCCCT------TGCGGGGTCGGCTCCTCTGAAAAGCATTA--GCGACGAAATCCTTTC--A?GGGTGGGCCCCAAAATGTGCTGTGGCATTGATAACAATTGTCTATGTCTCACTGCGGGGGGGGAGGATGA?CCAA-----GGGCGTTCTCCCTTACAATGGTCCTCGTCGTGGGGGACAAAGGCTCACCTTGA Hygrocybe_punicea_HM020682 ACGAAACGCTCA-GGGATGTTGCTGG-CCCTTTCTGCGAAG-------GGCATGTGCACTCCTTGAACATTCTGACCCTTCA----CCCCTGTGCACCCTTTTGTAGGCTTCAGAGG-GACCACTCTTTGGGGCCTATGTCATCATTAC--ATTTACAAACTCTAGTCGATCGAATGTTCTTGTAACAAGTAAACCTGGAGCTTTCTAGGTTTAAAAGTAACCCAATACAACTTTCAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTGAATTCTCAACTTGG-CCCGAGTTTGCTCTCGGAGCTCAAGCTTGGATTTGGAGTGTGCTGG-TCCCT------TGCGGGGTCGGCTCCTCTGAAAAGCATTA--GCGACGAAATCCTTTC--AAGGGTTGGCCCCAAAATGTGCTGTGGCATTGATAACAATTGTCTATGTCTCACTGCGGGGGGGGAGGATGACCCAA-----GGGCGTTCTCGCTTACAATGGTCCTCGTCGT-GGGGACAAAGGCTCACCTTGA Hygrocybe_sp_HM020686 ACGAAACGCTCA-GGGATGTTGCTGG-CCCTTTCTGCGAAG-------GGCATGTGCACTCCTTGAACATTCTGACCCTTCA----CCCCTGTGCACCCTTTTGTAGGCTTCAGAGG-GACCACTCTTTGGGGCCTATGTCATCATTAC--ATTTACAAACTCTAGTCGATCGAATGTTCTTGTAACAAGTAAACCTGGAGCTTTCTAGGTTTAAAAGTAACCCAATACAACTTTCAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTGAATTCTCAACTTGG-CCCGAGTTTGCTCTCGGAGCTCAAGCTTGGATTTGGAGTGTGCTGG-TCCCT------TGCGGGGTCGGCTCCTCTGAAAAGCATTA--GCGACGAAATCCTTTC--AAGGGTTGGCCCCAAAATGTGCTGTGGCATTGATAACAATTGTCTATGTCTCACTGCGGGGGGGGAGGATGACCCAA-----GGGCGTTCTCGCTTACAATGGTCCTCGTCGT-GGGGACAAAGGCTCACCTTGA Hygrocybe_sp_HM020687 ACGAAACGCTCA-GGGATGTTGCTGG-CCCTTTCTGCGAAG-------GGCATGTGCACTCCTTGAACATTCTGACCCTTCA----CCCCTGTGCACCCTTTTGTAGGCTTCAGAGG-GACCACTCTTTGGGGCCTATGTCATCATTAC--ATTTACAAACTCTAGTCGATCGAATGTTCTTGTAACAAGTAAACCTGGAGCTTTCTAGGTTTAAAAGTAACCCAATACAACTTTCAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTGAATTCTCAACTTGG-CCCGAGTTTGCTCTCGGAGCTCAAGCTTGGATTTGGAGTGTGCTGG-TCCCT------TGCGGGGTCGGCTCCTCTGAAAAGCATTA--GCGACGAAATCCTTTC--AAGGGTTGGCCCCAAAATGTGCTGTGGCATTGATAACAATTGTCTATGTCTCACTGCGGGGGGGGAGGATGACCCAA-----GGGCGTTCTCGCTTACAATGGTCCTCGTCGT-GGGGACAAAGGCTCACCTTGA Hygrocybe_reidii_MH562042 ------------------GTTGCTGG-CCCTTTCTGCGAAG-------GGCATGTGCACTCCTTGAACATTCTGACCCTTCA----CCCCTGTGCACCCTTTTGTAGGCTTCAGAGG-GACCACTCTTTGGGGCCTATGTCATCATTAC--ATTTACAAACTCTAGTCGATCGAATGTTCTTGTAACAAGTAAACCTGGAGCTTTCTAGGTTTAAAAGTAACCCAATACAACTTTCAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTGAATTCTCAACTTGG-CCCGAGTTTGCTCTCGGAGCTCAAGCTTGGATTTGGAGTGTGCTGG-TCCCT------TGCGGGGTCGGCTCCTCTGAAAAGCATTA--GCGACGAAATCCTTTC--AAGGGTTGGCCCCAAAATGTGCTGTGGCATTGATAACAATTGTCTATGTCTCACTGCGGGGGGGGAGGATGACCCAA-----GGGCGTTCTCGCTTACAATGGTCCTCGTCGT-GGGGACAAAGGCTCACCTTGA Uncultured_Hygrocybe_HQ022125 -------------------------------------GAAG-------GGCATGTGCACTCCTTGAACATTCTGACCCTTCA----CCCCTGTGCACCCTTTTGTAGGCTTCAGAGG-GACCACTCTTTGGGGCCTATGTCATCATTAC--ATTTACAAACTCTAGTCGATCGAATGTTCTTGTAACAAGTAAACCTGGAGCTTTCTAGGTTTAAAAGTAACCCAATACAACTTTCAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTGAATTCTCAACTTGG-CCCGAGTTTGCTCTCGGAGCTCAAGCTTGGATTTGGAGTGTGCTGG-TCCCT------TGCGGGGTCGGCTCCTCTGAAAAGCATTA--GCGACGAAATCCTTTC--AAGGGTTGGCCCCAAAATGTGCTGTGGCATTGATAACAATTGTCTATGTCTCACTGCGGGGGGGGAGGATGACCCAA-----GGGCGTTCTCGCTTACAATGGTCCTCGTCGT-GGGGACAAAGGCTCACCTTGA Hygrocybe_sp_HM020688 ACGAAACGCTCA-GGGATGTTGCTGG-CCCTTTCTGCGAAG-------GGCATGTGCACTCCTTGAACATTCTGACCCTTCA----CCCCTGTGCACCCTTTTGTAGGCTTCAGAGG-GACCACTCTTTGGGGCCTATGTCATCATTAC--ATTTACAAACTCTAGTCGATCGAATGTTCTTGTAACAAGTAAACCTGGAGCTTTCTAGGTTTAAAAGTAACCCAATACAACTTTCAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTGAATTCTCAACTTGG-CCCGAGTTTGCTCTCGGAGCTCAAGCTTGGATTTGGAGTGTGCTGG-TCCCT------TGCGGGGTCGGCTCCTCTGAAAAGCATTA--GCGACGAAATCCTTTC--AAGGGTTGGCCCCAAAATGTGCTGTGGCATTGATAACAATTGTCTATGTCTCACTGCGGGGGGGGAGGATGACCCAA-----GGGCGTTCTCGCTTACAATGGTCCTCGTCGT-GGGGACAAAGGCTCACCTTGA Hygrocybe_reidii_MH211855 ACGAAACGCTCA-GGGATGTTGCTGG-CCCTTTCTGCGAAG-------GGCATGTGCACTCCTTGAACATTCTGACCCTTCA----CCCCTGTGCACCCTTTTGTAGGCTTCAGAGG-GACCACTCTTTGGGGCCTATGTCATCATTAC--ATTTACAAACTCTAGTCGATCGAATGTTCTTGTAACAAGTAAACCTGGAGCTTTCTAGGTTTAAAAGTAACCCAATACAACTTTCAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTGAATTCTCAACTTGG-CCCGAGTTTGCTCTCGGAGCTCAAGCTTGGATTTGGAGTGTGCTGG-TCCCT------TGCGGGGTCGGCTCCTCTGAAAAGCATTA--GCGACGAAATCCTTTC--AAGGGTTGGCCCCAAAATGTGCTGTGGCATTGATAACAATTGTCTATGTCT------------------------------------------------------------------------------------ Hygrocybe_aff_reidii_KF291196 ACGAAACGCTCA-GGGATGTTGCTGG-CCCTTTCTGCGAAG-------GGCATGTGCACTCCTTGAACATTCTGACCCTTCA----CCCCTGTGCACCCTTTTGTAGGCTTCAGAGG-GACCACTCTTTGGGGCCTATGTCATCATTAC--ATTTACAAACTCTAGTCGATCGAATGTTCTTGTAACAAGTAAACCTGGAGCTTTCTAGGTTTAAAAGTAACCCAATACAACTTTCAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTGAATTCTCAACTTGG-CCCGAGTTTGCTCTCGGAGCTCAAGCTTGGATTTGGAGTGTGCTGG-TCCCT------TGCGGGGTCGGCTCCTCTGAAAAGCATTA--GCGACGAAATCCTTTC--AAGGGTTGGCCCCAAAATGTGCTGTGGCATTGATAACAATTGTCTATGTCTCACTGCGGGGGGGGAGGATGACCCAA-----GGGCGTTCTCGCTTACAATGGTCCTCGTCGT-GGGGACAAAGGCTCACCTTGA Hygrocybe_reidii_MH211775 ACGAAACGCTCA-GGGATGTTGCTGG-CCCTTTCTGCGAAG-------GGCATGTGCACTCCTTGAACATTCTGACCCTTCA----CCCCTGTGCACCCTTTTGTAGGCTTCAGAGG-GACCACTCTTTGGGGCCTATGTCATCATTAC--ATTTACAAACTCTAGTCGATCGAATGTTCTTGTAACAAGTAAACCTGGAGCTTTCTAGGTTTAAAAGTAACCCAATACAACTTTCAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTGAATTCTCAACTTGG-CCCGAGTTTGCTCTCGGAGCTCAAGCTTGGATTTGGAGTGTGCTGG-TCCCT------TGCGGGGTCGGCTCCTCTGAAAAGCATTA--GCGACGAAATCCTTTC--AAGGGTTGGCCCCAAAATGTGCTGTGGCATTGATAACAATTGTC------------------------------------------------------------------------------------------- Hygrocybe_reidii_MH211795 ACGAAACGCTCA-GGGATGTTGCTGG-CCCTTTCTGCGAAG-------GGCATGTGCACTCCTTGAACATTCTGACCCTTCA----CCCCTGTGCACCCTTTTGTAGGCTTCAGAGG-GACCACTCTTTGGGGCCTATGTCATCATTAC--ATTTACAAACTCTAGTCGATCGAATGTTCTTGTAACAAGTAAACCTGGAGCTTTCTAGGTTTAAAAGTAACCCAATACAACTTTCAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTGAATTCTCAACTTGG-CCCGAGTTTGCTCTCGGAGCTCAAGCTTGGATTTGGAGTGTGCTGG-TCCCT------TGCGGGGTCGGCTCCTCTGAAAAGCATTA--GCGACGAAATCCTTTC--AAGGGTTGGCCCCAAAATGTGCTGTGGCATTGATAACAATTGTCTATG--------------------------------------------------------------------------------------- Uncultured_Hygrocybe_JQ347152 ATGAAACGCTCG-GGGATGTTGCTGG-CCCTTTCTGCGAGGGGG----GGCACGTGCACTCCTTGAACATTCTGACCCCTTC-ACCCCCCTGTGCA-CCTTTTGTAGGCTTCAGAGG-GACCACCCTTTGGGGCCTATGTCA--ATTAC---CTTACAAACTCTAGTCGATCGAATG-TCCTGTAACAAGTAAATCTGGAGCTTTCTAGGTTTAAAAGTAACCCAATACAACTTTTAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGAGCATGCCTATTTGAGTGTCATTGAAATCTCAACTTGG-CCCGAGTTTGCTCTCGGAGCTACAGCTTGGATTTGGAGTGTGCTGG-TCCCT------TGTGGGGTTGGCTCCTCTGAAATGCATTAGCGCGACGAAATCCTTTC--AAGGGTTGGCCCTCGAATGCGCTGTGGCATTGATAACACTTGTCTATGTCTCACTGCTGG----------------------GGGTGTTCTCGCTTACAATTGTCCTCGTCGTGGGGGACAAAGGCTCACCTTGA Uncultured_Basidiomycota_AY969777 ATGGGACGCTCAGGGGAGGTGGCTGGCCCCTTTCTGCGAAGGTGGGG-GGCATGTGCACTCCTTGAACATTCTGACCCCCCT----CCCCTGTGCA-CCTTTTGTAGGCTTCAGAGAGGACCACCCTTTGGGGCCTATGTCA--ATTAC---CTTACGGACTCTAGTTGATCGAATG-TCGTGTAACAAGTAAATCTGGAGCTTTCTAGGTTTAAAAGTAACCCAATACAACTTTTAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTGAATTCTCAACTTGG-CCCGAGTTTGCTCTCGGAGCTACAGCTTGGAATTGGAGTGTGCTGGTTCCCT------TGTGGGGTCGGCTCCTCTGAAATGCATTA--GCGACGAAATTCTTTCC-AAGGGTTGGCCCTCGAATGCGCTGTGGCATTGATAACAATTGTCTATGTCTCACTGCCG-GGGGGAGGATGACCCAA-----GGGTGTTCTCGCTTACAATGGTCCTCGTCGTGGGGGACAAAGGCTCATCTTG- Hygrocybe_reidii_KF291194 ATGAAACGCTCA-GGGATGTTGCTGGCCCCTTTCTGCGAAGGTGGGG-GGCATGTGCACTCCTTGAACATTCTGACCCCCCY----YCCCTGT?GA-CCTTTTGTAGGCTTCAGAGAGGACCACCCTTTGGGGCCTATGTCA--ATTAC---CTTACAAACTCTAGTTGATCGAATG-TCGTGTAACAAGTAAATCTGGAGCTTTCTAGGTTTAAAAGTAACCCAATACAACTTTTAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCA-CTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTGAATTCTCAAC-TGG-CCCGAGTTTGCTCTCGGAGCTACAGCTTGGAATTGGAGTGTGCTGGTTCCCT------TGTGGGGTCGGCTCCTCTGAAATGCATTA--GCGACGAAATTCTTTCC?GAGGGTTGGCCCTCGAATGCGCTGTGGCATTGATAACAATTGTCTATGTCTCACTGCCG-GGGGGAGGATGACCCAA-----GGGTGTTCTCGCTTACAATGGTCCTCGTCGTGGGGGACAAAGGCTCATCTTGA Hygrocybe_cf_cantharellus_HM020689 ATGAAACGCTCA-GGGATGTTGCTGGCCCCTTTCTGCGAAGGTGGGG-GGCATGTGCACTCCTTGAACATTCTGACCCCCCT----CCCCTGTGCA-CCTTTTGTAGGCTTCAGAGAGGACCACCCTTTGGGGCCTATGTCA--ATTAC---CTTACAAACTCTAGTTGATCGAATG-TCGTGTAACAAGTAAATCTGGAGCTTTCTAGGTTTAAAAGTAACCCAATACAACTTTTAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTGAATTCTCAACTTGG-CCCGAGTTTGCTCTCGGAGCTACAGCTTGGAATTGGAGTGTGCTGGTTCCCT------TGTGGGGTCGGCTCCTCTGAAATGCATTA--GCGACGAAATTCTTTCC-AAGGGTTGGCCCTCGAATGCGCTGTGGCATTGATAACAATTGTCTATGTCTCACTGCCG-GGGGGAGGATGACCCAA-----GGGTGTTCTCGCTTACAATGGTCCTCGTCGTGGGGGACAAAGGCTCATCTTGA Hygrocybe_reidii_KF291195 ATGAAACGCTCA-GGGATGTTGCTGGCCCCTTTCTGCGAAGGTGGGG-GGCATGTGCACTCCTTGAACATTCTGACCCCCCY----YCCCTGTGCA-CCTTTTGTAGGCTTCAGAGAGGACCACCCTTTGGGGCCTATGTCA--ATTAC---CTTACAAACTCTAGTTGATCGAATG-TCGTGTAACAAGTAAATCTGGAGCTTTCTAGGTTTAAAAGTAACCCAATACAACTTTTAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTGAATTCTCAACTTGG-CCCGAGTTTGCTCTCGGAGCTACAGCTTGGAATTGGAGTGTGCTGGTTCCCT------TGTGGGGTCGGCTCCTCTGAAATGCATTA--GCGACGAAATTCTTTCC-AAGGGTTGGCCCTCGAATGCGCTGTGGCATTGATAACAATTGTCTATGTCTCACTGCCG-GGGGGAGGATGACCCAA-----GGGTGTTCTCGCTTACAATGGTCCTCGTGGTGGGGGA---------------- Hygrocybe_xanthochroa_EU784357 ATGAAACGCTCA-GGGATGTTGCTGGCCCCTTCCTGCGAAGGTGGGGAGGCATGTGCACTCCTTGAACATTCTGACCCCCCT-TCACCCCTGTGCA-CCTTTTGTAGGCTTCAGAGA-GACCACCCTTTGGGGCCTATGTCA--ATTAC---CTTACAAACTCTAGTTGATTGAATG-TTGTGTAACAAGTAAATCTGGAGCTTTCTAGGTTTAAAAGTAACCCAATACAACTTTTAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCRTGCCTGTTTGAGTGTCATTGAATTCTCAACTTGG-CCCGAGTTTGCTCTCGGAGCTACAGCTTGGATTTGGAGTGTGCTGGTTCCCT------TGTGGGGTCGGCTCCTCTGAAATGCATTA--GCGACGAAATTCTTTCC-AAGGGTTGGCCCTCGAATGCGCTGTGGCATTGATAACAATTGTCTATGTCTCACTGCCG-GGGGGAGGATGACCCAA-----GGGTGTTCTCGCTTACAATTGTCCTCGTCGT-GGGGAC-AAGGCTCATCTTGA Hygrocybe_reidii_EU784347 ATGAAACGCTCA-GGGATGTTGCTGGCCCCTTCCTGCGAAGGTGGGGAGGCATGTGCACTCCTTGAACATTCTGACCCCCCCTTCACCCCTGTGCA-CCTTTTGTAGGCTTCAGAGA-GACCACCCTTTGGGGCCTATGTCA--ATTAC---CTTACAAACTCTAGTTGATTGAATG-TTGTGTAACAAGTAAATCTGGAGCTTTCTAGGTTTAAAAGTAACCCAATACAACTTTTAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTGAATTCTCAACTTGG-CCCGAGTTTGCTCTCGGAGCTACAGCTTGGATTTGGAGTGTGCTGGTTCCCT------TGTGGGGTCGGCTCCTCTGAAATGCATTA--GCGACGAAATTCTTTCC-AAGGGTTGGCCCTCGAATGCGCTGTGGCATTGATAACAATTGTCTATGTCTCACTGCCG-GGGGGAGGATGACCCAA-----GGGTGCTCTCGCATACAATTGTCCTCGTCGTGGGGGACAAAGGCTCATCTTGA Hygrocybe_reidii_EU784348 -------------GG-------------------TGGGGAG-------GCGATGTGCACTCCTTGAACATTCTGACCCCCCCTTCACCCCTG-GCA-CCTTTTGTAGGCTTCAGAGA-GACCACCCTTTGGGGCCTATGTCA--ATTAC---CTTACAAACTCTAGTTGATTGAATG-TTGTGTAACAAGTAAATCTGGAGCTTTCTAGGTTTAAAAGTAACCCAATACAACTTTTAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTGAATTCTCAACTTGG-CCCGAGTTTGCTCTCGGAGCTACAGCTTGGATTTGGAGTGTGCTGGTTCCCT------TGTGGGGTCGGCTCCTCTGAAATGCATTA--GCGACGAAATTCTTTCC-AAGGGTTGGCCCTCGAATGCGCTGTGGCATTGATAACAATTGTCTATGTCTCACTGCCG-GGGGGAGGATGACCCAA-----GGGTGTTCTCGCTTACAATTGTCCTCGTCGTGGGGGACAAAGGCTCATCTTGA Hygrocybe_reidii_KF291158 ATGAAACGCTCA-GGGATGTTGCTGGCCCCTTCCTGCGAAGGTGGGGAGGCATGTGCACTCCTTGAACATTCTGACCCCCCT-TCACCCCTGTGCA-CCTTTTGTAGGCTTCAGAGA-GACCACCCTTTGGGGCCTATGTCA--ATTAC---CTTACAAACTCTAGTTGATTGAATG-TTGTGTAACAAGTAAATCTGGAGCTTTCTAGGTTTAAAAGTAACCCAATACAACTTTTAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTGAATTCTCAACTTGG-CCCGAGTTTGCTCTCGGAGCTACAGCTTGGATTTGGAGTGTGCTGGTTCCCT------TGTGGGGTCGGCTCCTCTGAAATGCATTA--GCGACGAAATTCTTTCC-AAGGGTTGGCCCTCGAATGCGCTGTGGCATTGATAACAATTGTCTATGTCTCACTGCCG-GGGGGAGGATGACCCAA-----GGGTGTTCTCGCTTACAATTGTCCTCGTCGTGGGGGACAAAGGCTCATC-TGA ; END; BEGIN TREES; Title 'Trees from "H rodomaculata Treebase ML tree.nex"'; ID 0169ba2050e11; LINK Taxa = Taxa; TRANSLATE [0] 1 Hygrocybe_rodomaculata_MK684225, [1] 2 Uncultured_fungus_GU174320, [2] 3 Hygrocybe_punicea_HM020682, [3] 4 Hygrocybe_sp_HM020686, [4] 5 Hygrocybe_sp_HM020687, [5] 6 Hygrocybe_reidii_MH562042, [6] 7 Uncultured_Hygrocybe_HQ022125, [7] 8 Hygrocybe_sp_HM020688, [8] 9 Hygrocybe_reidii_MH211855, [9] 10 Hygrocybe_aff_reidii_KF291196, [10] 11 Hygrocybe_reidii_MH211775, [11] 12 Hygrocybe_reidii_MH211795, [12] 13 Uncultured_Hygrocybe_JQ347152, [13] 14 Uncultured_Basidiomycota_AY969777, [14] 15 Hygrocybe_reidii_KF291194, [15] 16 Hygrocybe_cf_cantharellus_HM020689, [16] 17 Hygrocybe_reidii_KF291195, [17] 18 Hygrocybe_xanthochroa_EU784357, [18] 19 Hygrocybe_reidii_EU784347, [19] 20 Hygrocybe_reidii_EU784348, [20] 21 Hygrocybe_reidii_KF291158; TREE tree_1 = (15:0.0016741100000000064,(17:0.0017095500000000041,(16:0.0,(14:0.010128220000000007,((13:0.021079849999999997,(1:0.06971168,(9:0.0,(6:0.0,(11:0.0,(12:0.0,(10:0.0,(3:0.0,(4:0.0,(5:0.0,(8:0.0,(7:0.000001,2:0.0033691500000000013):0.000001):0.000002):0.000001):0.000001):0.000001):0.000008):0.0):0.000013):0.0):0.017683690000000002):0.01839152999999999):0.015210560000000012,((21:0.0,18:0.000008):0.000008,(20:0.007210839999999996,19:0.0033098299999999997):0.001629950000000005):0.005621509999999996):0.0032815399999999995):0.0):0.000012):0.0016741099999999925); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 643; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 643; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 643; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1553606078660; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8264537190843960657; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6329881114810949323; mqVersion 351; checksumv 0 3 3062630326 null getNumChars 643 numChars 643 getNumTaxa 21 numTaxa 21 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 291405.0 sumSquares -3.2281802128991683E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 392; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #8264537190843960657 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 0169ba2050e11; toggleUseWeights off; endTell; setAssignedID 997.1553605909748.1819553575819494005; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 392; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientRight; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow bootstrapFrequency; toggleShow posteriorProbability; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6329881114810949323 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 392; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;