#NEXUS

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=12;
	TAXLABELS
		'Hymenochaete tasmanica CN_JQ279583' 'Hymenochaete ochromarginata CN_JQ279578' 'Hymenochaete ochromarginata CN_JQ279579' 'Hymenochaete rubiginosa CN_JQ279580' 'Hymenochaete rubiginosa CN_JQ279581' 'Hymenochaete rubiginosa CN_JQ716407' 'Hymenochaete rubiginosa EE_UDB022826' 'Hymenochaete rubiginosa CH_X3422' 'Hymenochaete rubiginosa DE_FJ820546' 'Hymenochaete rubiginosa coll_US_FL_MH211729' 'Hymenochaete rubiginosa coll_US_MA_X3522' 'Hymenochaete rubiginosa coll_US_TN_X3423' 
	;
END;

BEGIN CHARACTERS;
	TITLE  Hydnoporia_ITS_12x660;
	DIMENSIONS  NCHAR=660;
	FORMAT DATATYPE = DNA GAP = - MISSING = ?;
	MATRIX
	'Hymenochaete tasmanica CN_JQ279583'         CTGAGG-TTAACCGGAGGTGAGCTCGTTGCTGGCG--CGCTCTTTT----GC-GCGCATGTGCACAGTTCTCCTT--CGTTCCATCCTTATCAACCCCTGTGCACTATATTAGGACTAGAGAGAAGCGCGTTGTTTTGCAGATTAACGTAGTAGTTGTGGGT-CCCGCCCGCGGCG-AAAGGTTGAATTCTGTTATATCGGCAGCGCGTGGTACCTCGAAGTCCTTGTTTATTAC-AAACCACTATACATGTCTTGTCAGAATGTTCAGTCCCTCGTTGGACGCT-AAATATAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGTATTCCGAAGGGCACGCCTGTTTGAGTGTCATGTTCATCTCAATCTAACAAGCTTTTTGCG-AGCTTGT-CTTGGGTTGGATTTGGGAGCCTGCTGG-CCCTTTCGCGGGGG-T-CGGCTCTCCTTGAATGCATGAGTGAGCATCTGGCTCGCGTTGCTAGTGTGAT-AAGTCTTTCATCATTGGCGGCGCTTGCTTAAT-GGGCTTGCTTTCGAACCGTCTTCTCAACGGAGACAACCT
	'Hymenochaete ochromarginata CN_JQ279578'    CTGAGG-TTAACCGGGGGTGAGCTCGTTGCTGGCG--CATTC-----------GCGCATGTGCACAGTTCATCTT--CGTTCCTTCCTTATCAACCCCTGTGCACTATATTAGGATTAGAGAGAAGCGCGTCGTTCAG-GGATTAACGTAGTAGTTGTGGGT-CCCACCCGCGGCG-AAAGGTTAA--TCTGT--TATTGGCGGCGTGTGGTACCTCGAAGTCCTTGTTTATCAC-AAAACACTATACATGTCTTGTCAGAATGTTCAGTCCCTCGTTGGACGCT-AAATATAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGTATTCCGAAGGGCACGCCTGTTTGAGTGTCATGTTCATCTCAATCCGTCAAGTTTTTTGCG-AGCTTGG-CTTGGGTTGGATTTGGGAGTCTGCTGGTCCCTTTTGCTGGGA-T-CGGCTCTCCTTGAATGCATGAGTGAGCATCTGACTCGCGTTGCTGGTGTGAT-AAG--CTTCATCATTGGCGGCGCTTGTCTAAT-GGGCTTGCTTTCGAACCGTCTTCTCAACGGAGACAAGCT
	'Hymenochaete ochromarginata CN_JQ279579'    CTGAGG-TTAACCGGGGGTGAGCTCGTTGCTGGCG--CATTC-----------GCGCATGTGCACAGTTCATCTT--CGTTCCTTCCTTATCAACCCCTGTGCACTATATTAGGATTAGAGAGAAGCGCGTCGTTCAG-GGATTAACGTAGTAGTTGTGGGT-CCCACCCGCGGCG-AAAGGTTAA--TCTGT--TATTGGCGGCGTGTGGTACCTCGAAGTCCTTGTTTATCAC-AAAACACTATACATGTCTTGTCAGAATGTTCAGTCCCTCGTTGGACGCT-AAATATAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGTATTCCGAAGGGCACGCCTGTTTGAGTGTCATGTTCATCTCAATCCGTCAAGTTTTTTGCG-AGCTTGG-CTTGGGTTGGATTTGGGAGTCTGCTGGTCCCTTTTGCTGGGA-T-CGGCTCTCCTTGAATGCATGAGTGAGCATCTGACTCGCGTTGCTGGTGTGAT-AAG--CTTCATCATTGGCGGCGCTTGTCTAATGGGGCTTGCTTTCGAACCGTCTTCTCAACGGAGACAAGCT
	'Hymenochaete rubiginosa CN_JQ279580'        CTGAGG-TCAACCGGGGGTGAGCTCGTTGCTGGCG-GCGTTCTTTT--GAGCGGCGCATGTGCACAGTTTATCTT--CGTTCCTTCCTTATCAACCCCTGTGCACTATATTAGGATTAGAGAGAAGCGCGTCGTTTAG-GGATTAACGTAGTAGTTGTGGGTCCACGCCCGCGGCG-AAAGGTTAA--TCTGT--TATCGGTGGCGTGTGGTACCTCGAAGTCCTTGTTTATCAT-AAACCACTATACATGTCTTGTCAGAATGTTCAGTCCCTCGTTGGACGCTAAAACATAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGTATTCCGAAGGGCACGCCTGTTTGAGTGTCATGTTCATCTCAATCCATCAAGCTTTTTGCGAAGCTTGA-TTTGGGTTGGATTTGGGAGTCTGCTGGCCCCTCTTGCTGGGG-TCCGGCTCTCCTTGAATGCATGAGTGAGCATCTGACTCGCGTTGCTGGTGTGAT-AAG--TTTCATCATTGGCGGCGCTTGTCTAAT-GGGCTTGCTTTCGAACCGTCTTCTCAACAGAGACAACCT
	'Hymenochaete rubiginosa CN_JQ279581'        CTGAGG-TCAACCGGGGGTGAGCTCGTTGCTGGCG-GCGTTCTTTT--GAGCGGCGCATGTGCACAGTTTATCTT--CGTTCCTTCCTTATCAACCCCTGTGCACTATATTAGGATTAGAGAGAAGCGCGTCGTTTAG-GGATTAACGTAGTAGTTGTGGGTCCACGCCCGCGGCG-AAAGGTTAA--TCTGT--TATCGGTGGCGTGTGGTACCTCGAAGTCCTTGTTTATCAT-AAACCACTATACATGTCTTGTCAGAATGTTCAGTCCCTCGTTGGACGCTAAAACATAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGTATTCCGAAGGGCACGCCTGTTTGAGTGTCATGTTCATCTCAATCCATCAAGCTTTTTGCGAAGCTTGA-TTTGGGTTGGATTTGGGAGTCTGCTGGCCCCTCTTGCTGGGG-TCCGGCTCTCCTTGAATGCATGAGTGAGCATCTGACTCGCGTTGCTGGTGTGAT-AAG--TTTCATCATTGGCGGCGCTTGTCTAAT-GGGCTTGCTTTCGAACCGTCTTCTCAACAGAGACAACCT
	'Hymenochaete rubiginosa CN_JQ716407'        CTGAGG-TCAACCGGGGGTGAGCTCGTTGCTGGCG-GCGTTCTTTT--GAGCGGCGCATGTGCACAGTTTATCTT--CGTTCCTTCCTTATCAACCCCTGTGCACTATATTAGGATTAGAGAGAAGCGCGTCGTTTAG-GGATTAACGTAGTAGTTGTGGGTCCACGCCCGCGGCG-AAAGGTTAA--TCTGT--TATCGGTGGCGTGTGGTACCTCGAAGTCCTTGTTTATCAT-AAACCACTATACATGTCTTGTCAGAATGTTCAGTCCCTCGTTGGACGCTAAAACATAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGTATTCCGAAGGGCACGCCTGTTTGAGTGTCATGTTCATCTCAATCCATCAAGCTTTTTGCGAAGCTTGA-TTTGGGTTGGATTTGGGAGTCTGCTGGCCCCTCTTGCTGGGG-TCCGGCTCTCCTTGAATGCATGAGTGAGCATCTGACTCGCGTTGCTGGTGTGAT-AAG--TTTCATCATTGGCGGCGCTTGTCTAAT-GGGCTTGCTTTCGAACCGTCTTCTCAACAGAGACAACCT
	'Hymenochaete rubiginosa EE_UDB022826'       CTGAGG-TTAACCGGGGGTGAGCTCGTTGCTGGCG--CGTTCTCTTTTGAGC-GCGCATGTGCACAGTTCATCTT--CGTTCCTTCCTTATCAACCCCTGTGCACTATATTAGGATTAGAGAGAAGCGCGTCGTTCAG-GGATTAACGTAGTAGTTGTGGGTCCCCACCCGCGGCGAAAAGGTTAA--TCTGT--TATCGGCGGCGTGTGGTACCTCGAAGTCCTTGTTTATCAT-AAACCACTATACATGTCTTGTCAGAATGTTCAGTCCCTCGTTGGACGCT-AAATATAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGTATTCCGAAGGGCACGCCTGTTTGAGTGTCATGTTCATCTCAATCCATCAAGCTTTT-GCG-AGCTTGG-CTTGGGTTGGATTTGGGAGTCTGCTGGCCCCTTCTGCTGGGG-T-CGGCTCTCCTTGAATGCATGAGTGAGCATCTGACTCGCGTTGCTGGTGTGAT-AAG--TTTCATCATTGGCGGCGCTTGTCTAAT-GGGCTTGCTTTCGAACCGTCTTCTCAACGGAGACAACCT
	'Hymenochaete rubiginosa CH_X3422'           CTGAGG-TTAACCGGGGGTGAGCTCGTTGCTGGCG--CGTTCTTTTTTGAGC-GCGCATGTGCACAGTTCATCTT--CGTTCCTTCCTTATCAACCCCTGTGCACTATATTAGGATTAGAGAGAAGCGCGTCGTTCAG-GGATTAACGTAGTAGTTGTGGGTCCCCACCCGCGGCGAAAAGGTTAA--TCTGT--TATCGGCGGCGTGTGGTACCTCGAAGTCCTTGTTTATCAT-AAACCACTATACATGTCTTGTCAGAATGTTCAGTCCCTCGTTGGACGCT-AAATATAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGTATTCCGAAGGGCACGCCTGTTTGAGTGTCATGTTCATCTCAATCCATCAAGCTTTT-GCG-AGCTTGG-CTTGGGTTGGATTTGGGAGTCTGCTGGCCCCTTCTGCTGGGG-T-CGGCTCTCCTTGAATGCATGAGTGAGCATCTGACTCGCGTTGCTGGTGTGAT-AAG--TTTCATCATTGGCGGCGCTTGTCTAAT-GGGCTTGCTTTCGAACCGTCTTCTCAACGGAGACAACCT
	'Hymenochaete rubiginosa DE_FJ820546'        CTGAGG-TTAACCGGGGGTGAGCTCGTTGCTGGCG--CGTTCTTTTTTGAGC-GCGCATGTGCACAGTTCATCTT--CGTTCCTTCCTTATCAACCCCTGTGCACTATATTAGGATTAGAGAGAAGCGCGTCGTTCAG-GGATTAACGTAGTAGTTGTGGGTCCCCACTCGCGGCGAAAAGGTTAA--TCTGT--TATCGGCGGCGTGTGGTACCTCGAAGTCCTTGTTTATCAT-AAACCACTATACATGTCTTGTCAGAATGTTCAGTCCCTCGTTGGACGCT-AAATATAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGTATTCCGAAGGGCACGCCTGTTTGAGTGTCATGTTCATCTCAATCCATCAAGCTTTT-GCG-AGCTTGG-CTTGGGTTGGATTTGGGAGTCTGCTGGCCCCTTCTGCTGGGG-T-CGGCTCTCCTTGAATGCATGAGTGAGCATCTGACTCGCGTTGCTGGTGTGAT-AAG--TTTCATCATTGGCGGCGCTTGTCTAAT-GGGCTTGCTTTCGAACCGTCTTCTCAACGGAGACAACCT
	'Hymenochaete rubiginosa coll_US_FL_MH211729' CTGAGGTTTAACCGGGGGTGAGCTCGCTGCTGGCG--CATTCTTTTTTGAGC-GCGCATGTGCACAGTTCATCTT--CGTTCCTTCCTTATCAACCCCTGTGCACTATATTAGGATTAGAGAGAAGCGCGTCGCTCAG-GGATTAACGTAGTAGCTGTGGGT-CCCACTCGCGGCA-AAAGGTTAA--TCTGT--TATCGGCGGCGTGTGGTACCTCAAAGTCCTTGTTTATCATAAAACCACTATACATGTCTTGTCAGAATGTTCAGTCCCTCGTTGGACTCT-AAATATAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGTATTCCGAAGGGCACGCCTGTTTGAGTGTCATGTTCATCTCAATCCATCAAGCTTTT-GCG-AGCTTGGCCTTGGGTTGGATTTGGGAGCCTGCTGGCCCCTTTTGCTGGGG-T-CGGCTCTCCTTGAATGCATGAGTGAGCATCTGACTCGCGTTGCTGGTGTGATAAAG--TTTCATCATTGGCGATGCTTGTCTAAT-GGGCTTGCTTTCGAACCGTCTTCTC--------------
	'Hymenochaete rubiginosa coll_US_MA_X3522'   CTGAGGTTTAACCGGGGGTGAGCTCGTTGCTGGCGCGCGTTCTTTT--GAGCGGCGCATGTGCACAGTTCATCTTCGCGTTCCTTCCTTATCAACCCCTGTGCACTATATTAGGATTAGAGAGAAGCGCGTCGTTCAG-GGATTAACGTAGTAGTTGTGGGT-CCCGCCTGTGGCG-AAAGGTTAA--TCTGT--TATCGACGGCGTGTGGTACCTCGAAGTCCTTGTTTATCAT-AAACCACTATACATGTCTTGTCAGAATGTTCAGTCCCTCGTCGGACGCT-AAATATAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGTATTCCGAAGGGCACGCCTGTTTGAGTGTCATGTTCATCTCAATCCATCAAGCTTTT-GCG-AGCTTGG-CTTGGGTTGGATTTGGGAGTCTGCTGGCCTCTTTTGCTGGGGGTCCGGCTCTCCTTGAATGCATGAGTGAGCATCTGACTCGCGTTGCTGGTGTGAT-AAG--TTTCATCATTGGCGGCGCTTGTCTAAT-GGGCTTGCTTTCGAACCGTCTTCTCAACGGAGACAACCT
	'Hymenochaete rubiginosa coll_US_TN_X3423'   CTGAGGTTTAACCGGGGGTGAGCTCGCTGCTGGCG--CATTCTCTTTTGAGC-GCGCATGTGCACAGTTCATCTT--CGTTCCTTCCTTATCAACCCCTGTGCACTATATTAGGATTAGAGAGAAGCGCGTCGCTCAG-GGATTAACGTACTAGCTGTGGGT-CCCACTCGCGGCA-AAAGGTTGA--TCTGT--TATCGGCGGCGTGTGGTACCTCAAAGTCCTTGTTTATCAT-AAACCACTATACATGTCTTGTCAGAATGTTCAGTCCCTCGTTGGAYTCT-AAATATAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGTATTCCGAAGGGCACGCCTGTTTGAGTGTCATGTTCATCTCAATCCATCAAGCT------------TGGCCTTGGGTTGGATTTGGGAGCCTGCTGGCCCCTTTTGCTGGGG-T-CGGCTCTCCTTGAATGCATGAGTGAGCATCTGACTCGCGTTGCTGGTGTGATAAAG--TTTCATCATTGGCGATGCTTGTCTAAT-GGGCTTGCTTTCGAACCGTCTTCTCAACGGAGACAACCT
;
END;

BEGIN MRBAYES;
	Prset applyto = ( all ) ratepr = variable statefreqpr = dirichlet ( 1 , 1 , 1 , 1 );
	lset applyto = ( all ) nst = 6;
	mcmcp ngen = 5000000 printfreq = 2000 samplefreq = 2000 diagnfreq = 200000 nchains = 8 nruns = 3 temp = 0.1;
END;

BEGIN TREES;
	Title Hydnoporia_ITS_12x660;
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		1 'Hymenochaete tasmanica CN_JQ279583',
[1] 		2 'Hymenochaete ochromarginata CN_JQ279578',
[2] 		3 'Hymenochaete ochromarginata CN_JQ279579',
[3] 		4 'Hymenochaete rubiginosa CN_JQ279580',
[4] 		5 'Hymenochaete rubiginosa CN_JQ279581',
[5] 		6 'Hymenochaete rubiginosa CN_JQ716407',
[6] 		7 'Hymenochaete rubiginosa EE_UDB022826',
[7] 		8 'Hymenochaete rubiginosa CH_X3422',
[8] 		9 'Hymenochaete rubiginosa DE_FJ820546',
[9] 		10 'Hymenochaete rubiginosa coll_US_FL_MH211729',
[10] 		11 'Hymenochaete rubiginosa coll_US_MA_X3522',
[11] 		12 'Hymenochaete rubiginosa coll_US_TN_X3423';
	TREE con_50_majrule = (1:0.033171305,((4:0.002017645,5:0.002031988,6:0.001985059):0.02582533,(11:0.01498047,((7:0.004633388,8:0.002050073,9:0.004373419):0.004834961,((2:0.002094405,3:0.002002975):0.02648111,(10:0.002141506,12:0.009745768):0.0285819):0.004645651):0.00485705):0.004971971):0.033171305);
END;