#NEXUS [written Mon Oct 28 17:20:51 CET 2019 by Mesquite version 3.40 (build 877) at mdk-crou-006.cbs-niob.local/10.136.73.120] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=19; TAXLABELS Ramularia_endophylla_AY490763.1 Nowamyces_piperitae_CPC_36042 Nowamyces_piperitae_CPC_36044 Nowamyces_piperitae_CPC_32372 Nowamyces_piperitae_CPC_36032 Nowamyces_piperitae_CPC_36040 Nowamyces_piperitae_CPC_32901 Nowamyces_piperitae_CPC_32946 Nowamyces_piperitae_CPC_32400 Nowamyces_piperitae_CPC_36038 Nowamyces_globulus_CPC_33553 Nowamyces_globulus_CPC_32722 Nowamyces_globulus_CPC_32726 Nowamyces_globulus_CPC_32724 Nowamyces_globulus_CPC_32894 Nowamyces_globulus_CPC_33583 Nowamyces_globulus_CPC_25465 Nowamyces_globulus_CPC_33547 Nowamyces_globulus_CPC_33557 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=583; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Ramularia_endophylla_AY490763.1 ------------------------------------------agggatcattactgagtgagggcttcc--ggcccgacctccaaccctttgtgaacacatcttgttgcttcgggggcgaccctgccgttcgcggcatt------ccccccggaggtcatca--aaacactgc-attcttacgtcggagtaaaaagttaatttaataaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcctgttcgagcgtcatttc-accactcaagcctcgcttggtattgggcgtcgcgagtctctcgcgcgcctcaaagtctccggctgtgcggttcgtctcccagcgttgtggcaactatttcgcagt--ggagttcgagtcgtcgtggccgttaaa------------tctttcaaaggttgacctcggatcagg------------------------------------------- Nowamyces_piperitae_CPC_36042 --------------------------------gaacctgcggagggatcattaccgagcgagggtcccccggacccgacctccaacccactgtgaaccgaccccgttgcttcgggggcgacccggccgtctcggcggctccggggcccccggtggccttttttcgaactctgcgatgcctgcgtcggagcgaacagcaaatgaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcccgtccgagcgtcattacgaccaatcccgcctggcggggtcttgggcgccgcg-gtccgccgcgcgcctcaaagtcttcggccgcgtggcccgtccccgagcgttgtggcatctgtttctcgctcacgggaccgggcggcgtcggccgtgaaaccggggctcg-ccccacctcaggttgacctcggatcgggtagggatacccgctgaacttaagcata---------------- Nowamyces_piperitae_CPC_36044 --------------aacaaggtctccgtaggtgaacctgcggagggatcattaccgagcgagggtcccccggacccgacctccaacccactgtgaaccgaccccgttgcttcgggggcgacccggccgtctcggcggctccggggcccccggtggccttttttcaaactctgcgatgcctgcgtcggagcgaacagcaaatgaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcccgtccgagcgtcattacgaccaatcccgcctggcggggtcttgggcgccgcg-gtcccccgcgcgcctcaaagtcttcggccgcgtggcccgtccccgagcgttgtggcatctgtttctcgctcacgggaccgggcggcgtcggccgcgaaaccggggctcg-ccccacctcaggttgacctcggatcgggtagggatacccgctgaacttaagcatat--------------- Nowamyces_piperitae_CPC_32372 --------------------gtctccgtaggtgaacctgcggagggatcattaccgagtgagggtcccccggacccgacctccaacccactgtgaaccgaccctgttgcttcgggggcgacccggccgtctcggcggctccggggcccccggtggccattttt-aaactctgcgatgcctgcgtcggagcgaacagcaaatagaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcccgtccgagcgtcattacgaccaatcccgcctggcggggtcttgggcgtcgcg-gtccgccgcgcgcctcaaagtcttcggccgcgtggcccgtccccgagcgttgtggcatctgtttctcgctcacgggaccgggcggcgtcggccgcgaaaccggggctcg-ccccacctcaggttgacctcggatcgggtagggatacccgctgaacttaagcatatca------------- Nowamyces_piperitae_CPC_36032 ----------------caaggtctccgtaggtgaacctgcggagggatcattaccgagcgagggtcccccggacccgacctccaacccactgtgaaccgaccctgttgcttcgggggcgacccggccgtctcggcggctccggggcccccggtggccctttttcaaactctgcgatgcctgcgtcggagcgaacagcaaatagaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcccgtccgagcgtcattacgaccaatcccgcctggcggggtcttgggcgtcgcg-gtccgccgcgcgcctcaaagtcttcggccgcgtggcccgtccccgagcgttgtggcatctgtttctcgctcacgggaccgggcggcgtcggccgcgaaaccggggctcg-ccccacctcaggttgacctcggatcgggtagggatacccgctgaacttaagcatat--------------- Nowamyces_piperitae_CPC_36040 --------------------------------------gcggagggatcattaccgagcgagggtcccccgggcccgacctccaacccactgtgaaccgaccccgttgcttcgggggcgacccggccgtctcggcggccccggggcccccggtggccctttttcaaactctgcgatgcctgcgtcggagcgaacagcaaatagaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcccgtccgagcgtcattacgaccaatcccgcctggcggggtcttgggcgtcgcg-gtccgccgcgcgcctcaaagtcttcggccgcgtggcccgtccccgagcgttgtggcatctgtttctcgctcacgggaccgggcggcgtcggccgcgaaaccggggctcg-ccccacctcaggttg-------------------------------------------------------- Nowamyces_piperitae_CPC_32901 ------------gtaacaaggtctccgtaggtgaacctgcggagggatcattaccgagcgagggtcccccggacccgacctccaacccactgtgaaccgaccccgttgcttcgggggcgacccggccgtctcggcggctccggggcccccggtggccctttttcaaactctgcgatgcctgcgtcggagcgaacagcaaatagaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcccgtccgagcgtcattacgaccaatcccgcctggcggggtcttgggcgtcgcg-gtccgccgcgcgcctcaaagtcttcggccgcgtggcccgtccccgagcgttgtggcatctgtttctcgctcacgggaccgggcggcgtcggccgcgaaaccggggctcg-ccccacctcaggttgacctcggatcgggtagggatacccgctgaacttaa--------------------- Nowamyces_piperitae_CPC_32946 ------------gtaacaaggtctccgtaggtgaacctgcggagggatcattaccgagcgagggtcccccggacccgacctccaacccactgtgaaccgaccccgttgcttcgggggcgacccggccgcttcggcggcaccggggcccccggtggccctttttcaaactctgcgatgcctgcgtcggagcgaacagcaaatagaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcccgtccgagcgtcattacgaccaatcccgcctggcggggtcttgggcgttgcg-gtccgccgcgcgcctcaaagtcttcggccgcgtggcccgtccccgagcgttgtggcatctgtttctcgctcacgggaccgggcggcgtcggccgcgaaaccggggctcg-ccccacctcaggttgacctcggatcgggtagggatacccgctgaac------------------------- Nowamyces_piperitae_CPC_32400 ---------------------tctccgtaggtgaacctgcggagggatcattaccgagcgagggtcccccggacccgacctccaacccactgtgaaccgaccccgttgcttcgggggcgacccggccgcttcggcggctccggggcccccggtggccctttttcaaactctgcgatgcctgcgtcggagcgaacagcaaatagaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcccgtccgagcgtcattacgaccaatcccgcctggcggggtcttgggcgtcgcg-gtccgccgcgcgcctcaaagtcttcggccgcgtggcccgtccccgagcgttgtggcatctgtttctcgctcacgggaccgggcggcgtcggccgcgaaaccggggctcg-ccccacctcaggttgacctcggatcgggtagggatacccgctgaacttaagcatatc-------------- Nowamyces_piperitae_CPC_36038 ----------------------ctccgtaggtgaacctgcggagggatcattaccgagcgagggtcccccggacccgacctccaacccactgtgaaccgaccccgttgcttcgggggcgacccggccgcttcggcggctccggggcccccggtggccctttttcaaactctgcgatgcctgcgtcggagcgaacagcaaatagaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcccgtccgagcgtcattacgaccaatcccgcctggcggggtcttgggcgtcgcg-gtccgccgcgcgcctcaaagtcttcggccgcgtggcccgtccccgagcgttgtggcatctgtttctcgctcacgggaccgggcggcgtcggccgcgaaaccggggctcg-ccccacctcaggttgacctcggatcgggtagggatacccgctgaacttaagcatat--------------- Nowamyces_globulus_CPC_33553 -------------taacaaggtctccgtaggtgaacctgcggagggatcattactgagtgagggtcccccggacccgacctccaacccactgtgaaccgaacctgttgcttcgggggcgacccggccgtttcggcggctcc-gggcccccggtggcccattt--gaactctgtgatccttgcgtcggagcgaatagcgaatgaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcccgtccgagcgtcattacgaccaatcccgcctggcggggtcttgggcgccgcg-gtccgccgcgcgcctcaaagtcttcggccgcgtggcccgtccccgagcgttgtggcatctgtttctcgctcacgggaccgggcggcgtcggccgcgaaaccggggctcgtccccacctcaggttgacctcggatcgggtagggatacccgctgaacttaagcatatcaataagcggaggaa Nowamyces_globulus_CPC_32722 -------------taacaaggtctccgtaggtgaacctgcggagggatcattactgagcgagggtcccccgggcccgacctccaacccactgtgaaccgaacctgttgcttcgggggcgacccggccgcttcggcggctccggggcccccggtggcccatct--gaactctgtgatccctgcgtcggagcgaacagcgaatcaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcccgtccgagcgtcattacgaccaatcccgcctggcggggtcttgggcgccgcg-gtccgccgcgcgcctcaaagtcttcggccgcgtggcccgtccccgagcgttgtggcttctgtttctcgctcacgggaccgggcggcgtcggccgcgaaaccggggctcgtccccacctcaggttgacctcggatcgggtagggatacccgctgaacttaa--------------------- Nowamyces_globulus_CPC_32726 -----------cgtaacaaggtctccgtaggtgaacctgcggagggatcattactgagcgagggtcccccgggcccgacctccaacccactgtgaaccgaacctgttgcttcgggggcgacccggccgcttcggcggctccggggcccccggtggcccatct--gaactctgtgatccctgcgtcggagcgaacagcgaatcaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcccgtccgagcgtcattacgaccaatcccgcctggcggggtcttgggcgccgcg-gtccgccgcgcgcctcaaagtcttcggccgcgtggcccgtccccgagcgttgtggcatctgtttctcgctcacgggaccgggcggcgtcggccgcgaaaccggggctcgtccccacctcaggttgacctcggatcgggtagggatacccgctgaacttaa--------------------- Nowamyces_globulus_CPC_32724 ---------------acaaggtctccgtaggtgaacctgcggagggatcattactgagcgagggtcccccgggcccgacctccaacccactgtgaaccgaacctgttgcttcgggggcgacccggccgcttcggcggctccggggcccccggtggcccatct--gaactctgtgatccctgcgtcggagcgaacagcgaatcaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcccgtccgagcgtcattacgaccaatcccgcctggcggggtcttgggcgccgcg-gtccgccgcgcgcctcaaagtcttcggccgcgtggcccgtccccgagcgttgtggcatctgtttctcgctcacgggaccgggcggcgtcggccgcgaaaccggggctcgtccccacctcaggttgacctcggatcgggtagggatacccgctgaacttaa--------------------- Nowamyces_globulus_CPC_32894 -----------------aaggtctccgtaggtgaacctgcggagggatcattactgagcgagggtcccccgggcccgacctccaacccactgtgaaccgaacctgttgcttcgggggcgacccggccgcttcggcggctccggggcccccggtggcccatct--gaactctgtgatccctgcgtcggagcgaacagcgaatcaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcccgtccgagcgtcattacgaccaatcccgcctggcggggtcttgggcgccgcg-gtccgccgcgcgcctcaaagtcttcggccgcgtggcccgtccccgagcgttgtggcatctgtttctcgctcacgggaccgggcggcgtcggccgcgaaaccggggctcgtccccacctcaggttgacctcggatcgggtagggatacccgctgaacttaa--------------------- Nowamyces_globulus_CPC_33583 -------------taacaaggtctccgtaggtgaacctgcggagggatcattactgagcgagggccccctgggcccgacctccaacccactgtgaaccgaacctgttgcttcgggggcgacccggccgcgtcggcggctccggggcccccggtggcccattt--gaactctgtgatccttgcgtcggagcgaacagcgaatgaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcccgtccgagcgtcattacgaccaatcccgcctggcggggtcttgggcgccgcg-gtctgccgcgcgcctcaaagtcttcggccgcgtggcccgtccccgagcgttgtggcatctgtttctcgctcacgggaccgggcggcgtcggccgcgaaaccggggttcgtccccacctcaggttgacctcggatcgggtagggatacccgctgaacttaagcatatcaata---------- Nowamyces_globulus_CPC_25465 --------------------------------------------------------------ggccccctgggcccgacctccaacccactgtgaaccgaacctgttgcttcgggggcgacccggccgcgtcggcggctccggggcccccggtggcccattt--gaactctgtgatccttgcgtcggagcgaacagcgaatgaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcccgtccgagcgtcattacgaccaatcccgcctggcggggtcttgggcgccgcg-gtctgccgcgcgcctcaaagtcttcggccgcgtggcccgtccccgagcgttgtggcatctgtttctcgctcacgggaccgggcggcgtcggccgcgaaaccggggttcgtccccacctcaggttgacctcggatcgggtagggatacccgctgaacttaagcata---------------- Nowamyces_globulus_CPC_33547 ---------gtcgtaacaaggtctccgtaggtgaacctgcggagggatcattactgagcgagggccccctgggcccgacctccaacccactgtgaaccgaacctgttgcttcgggggcgacccggccgcgtcggcggctccggggcccccggtggcccattt--gaactctgtgatccttgcgtcggagcgaacagcgaatgaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcccgtccgagcgtcattacgaccaatcccgcctggcggggtcttgggcgccgcg-gtctgccgcgcgcctcaaagtcttcggccgcgtggcccgtccccgagcgttgtggcatctgtttctcgctcacgggaccgggcggcgtcggccgcgaaaccggggttcgtccccacctcaggttgacctcggatcgggtagggatacccgctgaacttaagcatatcaatag--------- Nowamyces_globulus_CPC_33557 gaagtaaaagtcgtaacaaggtctccgtaggtgaacctgcggagggatcattactgagcgagggccccctgggcccgacctccaacccactgtgaaccgaacctgttgcttcgggggcgacccggccgcgtcggcggctccggggcccccggtggcccattt--gaactctgtgatccttgcgtcggagcgaacagcgaatgaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcccgtccgagcgtcattacgaccaatcccgcctggcggggtcttgggcgccgcg-gtctgccgcgcgcctcaaagtcttcggccgcgtggcccgtccccgagcgttgcggcatctgtttctcgctcacgggaccgggcggcgtcggccgcgaaaccggggttcgtccccacctcaggttgacctcggatcgggtagggatacccgctgaacttaagcatatcaataagcggagga- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 583; END; BEGIN PAUP; LOG start = yes append = yes; set autoclose = yes warnreset = no torder = right; OUTGROUP outgroups / only; exclude 1 - . / only; include combined / only; SET CRITERION = distance maxtrees = 1000 increase = no storebrlens = yes outroot = paraphyl; DSet distance = p; NJ breakties = random brlens = yes showtree = yes; Savetrees from = 1 to = 1 format = nexus brlens = yes maxdecimals = 6 file = NowamycesITSuncorrectedp.tre; Bootstrap nreps = 1000 search = nj; Savetrees from = 1 to = 1 file = NowamycesITSuncorrectedpbs.tre format = nexus brlens = yes savebootp = nodelabels maxdecimals = 0; DSet distance = k2p; NJ breakties = random brlens = yes showtree = yes; Savetrees from = 1 to = 1 format = nexus brlens = yes maxdecimals = 6 file = NowamycesITSkimura2p.tre; Bootstrap nreps = 1000 search = nj; Savetrees from = 1 to = 1 format = nexus brlens = yes savebootp = nodelabels maxdecimals = 0 file = NowamycesITSkimura2pbs.tre; DSet distance = hky85; NJ breakties = random brlens = yes showtree = yes; Savetrees from = 1 to = 1 format = nexus brlens = yes maxdecimals = 6 file = NowamycesITShky85.tre; Bootstrap nreps = 1000 search = nj; Savetrees from = 1 to = 1 format = nexus brlens = yes savebootp = nodelabels maxdecimals = 0 file = NowamycesITShky85bs.tre; SET CRITERION = parsimony maxtrees = 1000 increase = no storebrlens = yes outroot = paraphyl; Pset gapmode = newstate; HSEARCH ADDSEQ = random NREPS = 100 SWAP = TBR; roottrees ROOT = OUTGROUP OUTROOT = MONOPHYL; Savetrees format = nexus brlens = yes maxdecimals = 0 file = NowamycesITSparsimony.trees; PSCORES 1 / TL = yes CI = yes RI = yes RC = yes HI = yes; Contree ALL / strict = yes treefile = NowamycesITSparsimonycons.tre; Bootstrap nreps = 1000 search = heuristic; Savetrees from = 1 to = 1 format = nexus brlens = yes savebootp = nodelabels maxdecimals = 0 file = NowamycesITSparsimonybootstrap.tre; Log stop = yes; END; BEGIN SETS; CHARSET combined = 63 - 527; TAXSET outgroups = 1; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 583; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 583; END; BEGIN TREES; Title 'Trees from "Fig 66.trees"'; ID 016e1328dab01; LINK Taxa = Taxa; TRANSLATE [0] 1 Ramularia_endophylla_AY490763.1, [1] 2 Nowamyces_piperitae_CPC_36042, [2] 3 Nowamyces_piperitae_CPC_36044, [3] 4 Nowamyces_piperitae_CPC_32372, [4] 5 Nowamyces_piperitae_CPC_36032, [5] 6 Nowamyces_piperitae_CPC_36040, [6] 7 Nowamyces_piperitae_CPC_32901, [7] 8 Nowamyces_piperitae_CPC_32946, [8] 9 Nowamyces_piperitae_CPC_32400, [9] 10 Nowamyces_piperitae_CPC_36038, [10] 11 Nowamyces_globulus_CPC_33553, [11] 12 Nowamyces_globulus_CPC_32722, [12] 13 Nowamyces_globulus_CPC_32726, [13] 14 Nowamyces_globulus_CPC_32724, [14] 15 Nowamyces_globulus_CPC_32894, [15] 16 Nowamyces_globulus_CPC_33583, [16] 17 Nowamyces_globulus_CPC_25465, [17] 18 Nowamyces_globulus_CPC_33547, [18] 19 Nowamyces_globulus_CPC_33557; TREE Fig._66_Parsimony = ((((2:2,3:1):2,((((8:2,9:0.0,10:0.0):2,6:2,7:0.0):1,5:0.0):0.0,4:2):3):7,(((12:1,13:0.0,14:0.0,15:0.0):3,(16:0.0,17:0.0,18:0.0,19:1):5):2,11:2):4):36,1:70):0.0; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1572279651318; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8039987629270565076; tell It; setDefaultOrder 18 0 1 8 5 6 7 2 3 4 17 9 10 11 12 13 14 15 16; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1700062555679014329; mqVersion 340; checksumv 0 3 2203484068 null getNumChars 583 numChars 583 getNumTaxa 19 numTaxa 19 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 194400.0 sumSquares -8.937447503712278E21 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 609; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 2256 1182; setLocation 8 23; setFont SanSerif; setFontSize 18; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #8039987629270565076 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 016e1328dab01; toggleUseWeights off; endTell; setAssignedID 996.1572279479041.7672640830373482829; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1647 1110; setLocation 8 23; setFont SanSerif; setFontSize 18; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter off; toggleEven off; setFixedTaxonDistance 0; endTell; setEdgeWidth 6; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(1:70,(((2:2,3:1):2,(4:2,(5:0.0,(6:2,7:0.0,(8:2,9:0.0,10:0.0):2):1):0.0):3):7,(11:2,((12:1,13:0.0,14:0.0,15:0.0):3,(16:0.0,17:0.0,18:0.0,19:1):5):2):4):36):0.0;'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow bootstrapFrequency; toggleShow posteriorProbability; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1700062555679014329 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 951; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1647 1110; setLocation 8 23; setFont SanSerif; setFontSize 18; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;