#NEXUS [written Tue Jun 11 01:38:32 ART 2019 by Mesquite version 3.6 (build 917) at Nazareno-PC/192.168.56.1] BEGIN TAXA; TITLE Bacillus_app.; DIMENSIONS NTAX=11; TAXLABELS Bacillus_amyloliquefaciens_DSM7_T_FN597644 Bacillus_coagulans_NBRC_12583_T_CP009709 Bacillus_licheniformis_DSM_13_T_AE017333 Bacillus_methylotrophicus_CBMB205_T_NZ_CP011937 Bacillus_siamensis_KCTC_13613_T_NZ_AJVF01000041 Bacillus_subtilis_KCTC_3135_T_CP015375 Bacillus_vallismortis_DSM_11031_T_NZ_JH600197 Bacillus_velezensis_CR_502_T_NZ_LHCC01000001 BB6L_MH750310 GrB7L_MH750309 A6_MH750311 ; END; BEGIN CHARACTERS; TITLE recN_Bacillus_spp.; DIMENSIONS NCHAR=926; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Bacillus_amyloliquefaciens_DSM7_T_FN597644 GCAGAGCACCTGTGAACCGGTAGATACTTTATGGATTTTTTCCGCGATGGCCTGCGCAACCCGCCCGCTTACACCGGTGTCCACTTCGTCA--AAGATGATGGAAGTGACATCCTGCTGAGAAGAAAAAATACTCTT----------TATCGCCAGCATCACCCTTGAAAGTTCGCCGCCGGACGCAACCTTTGACAGCGGCTTGAGAGGCTCACCGGTATTT--GTTGAAA-------TTAAAAATTTCACAAGGTCAATGCCCTTTTGGGTAAGCTGCACGGGCTGGCCGTTGA-CAACTGGCGCTTCATCGGCTGACGGATCGGTTTTCACAAGAAATTCCGTATCAAACGTAGATTTGCCCATATACAGACTTT---TTAATTCCTGATGAATCGCTTCAGCCAGTTTTTTGGCCCATGCTTTTCTGATTTTTGATAAGTTGGCGGCTTCTACGGCCACAT--CTTTGCCCACGGACTCCAGTTCCTTCTTCAGCGTTTCAAGGTGGCTGTCAC---GGTTCTCGATTTGATCAATTTCCTCTTCTATCTTTGAGCCGTATTCCAGAATAT------CTTCTACCGTCGCTCCGTATTTGC---GCTTCAGCTGTTTAATCTCGTTTAAACGGGTTTCAATAAAATTCAGCCGTTCCGGATCATATTCCAGATCATCTAAC--AAATTGCGCATCTGAAA-GGTTGCATCTTCCAGCAGATAATAGGAACTTGACACAGTTTCGGACAGCTTTTGCAGCGGTTCATTGATATCCGAAATGTCTTCAAGCTGGGCAGAAGCCATTCCGACCCAGTCGAGACCCCCCTGCTCACTGCGGAGCGCATTATAGGC--GTTTTGCAATGATTCATAAATTTTCTCAAAGTTGGATATTTG-CTTCCGTTCTTCCTGAAGAAGCTCGT Bacillus_coagulans_NBRC_12583_T_CP009709 GCAAAGGACTTGCGAATGGACCGAGATATGGTAAATTTTTTCCGCAATCGCCTGTGCTACGCGGCCGCTTACGCCGGTATCCACTTCGTCG--AAAATGACGGAAGTGATCCCCTGGTGCCGGGAAAAAATCGTTTT----------CAATGCCAGCATAATCCGCGACAATTCCCCGCCCGAAGCAGTTTTTGCGAGCGGTTTAGACGGTTCGCCCGGGTTG--GTGGAAA-------TGTAAAATTCAACCTGATCGAGCCCGTCGCGCCTAAACGGAAT-GTCATCCGCCTCA-TAATAA-----TCATCAGC------AGCGG------CAAGAAAACGGACTTCAAACTTTGTTTTATCCATATACAGCTGCT---TTAATTCGGAATGGATATTTTCAGTCAGCTTTTCCGCCCATTTTTTGCGCAAATCGCTGAGCTGCTTGGCTTCCAAATAAAGAT--CGCGTTTTACCGTCTGCAATTCTTTTTGCAAAAGCTCTACATGATGGTCGC---GGTTTACGATCGATTCAATTTCTTCTTCAATTTTGGACCCGTATTCCAGAATTT------CTTCGATCGTGCTGCCGTATTTTC---GTTTTAACTGGTTAATCTCATTCAGCCGCGCTTCAATCACGTTAAGCCGTTCCGGGTCAAATTCAAGCCCGTCAAGC--CGGGAACGGATCGAGCG-GGACATGTCTTCGAGCGTATAAAAACAACTTTGGACGGATTCCAAAATGTCAGAGAGCCCGCCATCCACTTCGGCCGCGGTTTCAAGATGGCTCATGGCAAGGCTGAGCCAGTCGAGGCCGTGCTGTTCCCCGGCAAGCGCTTCATACCC--CGCGTTCAATGATTCAAACAGCCGTTCAAAATTGACGAGTTTTC-GTTTTTCTTCCGCTAATTCCTCGT Bacillus_licheniformis_DSM_13_T_AE017333 GCATAAAACTTGAGAGCCGATAGAGACGCGGTGTATTTTTTCAGCGATCGCCTGCGCGACTCTTCCGCTTACACCAGTGTCCACTTCATCG--AAAATGATCGATGTAACATCCTGCTGAGCGGAGAAAATGCTTTT----------CATCGCCAGCATGATTCTTGAGAGCTCTCCTCCTGAAGCAACCTTTGACAAGGATTTAAGCGGTTCTCCCGTGTTT--GTGGAGA-------TCAGGAAACGAACGGTGTCAATGCCGTGCTTTGTGAGCTGAACAGGCATTCCGTTGA-CGACGGGTGCATCATCATCCCGTTCCGCTTTTTTCACATGAAATTCCGTATCAAATGTCGATTTTTCCATATACAGATCTT---TCAATTCCTGCTGAATCTGTTTGGCCAGCTTTTCCGCCCATTTTTTTCTGATTTCGGACACATTGGCTGCTTCAATCGCCACAT--CCTTGCCGATTGATTCGAGTCGTGATTTTAAAGCCTGCAAGTGGCTGTCCC---GGTTTTCGATCCGGTCGATTTCTTCCTCTATCTTAGCCGAATAAGCTTGGATGT------CTTCGACAGTAGCGCCGTATTTGC---GTTTCAGCTGTTTGATTTCGTTTAAACGCGATTCGATATAATCGAGGCGCTCGGGGTCGTATTCGAGTTCATCCAGC--ATATTTCTGATCTGAAA-GGTTGAATCTTCGAGAATGTAGTAAGCGTTGGCTACCGATTCAGATACTTTATTGAGCCCTTCATTAATGCCTGAGACGTTTTCAAGCTCGCTTGAAGCCATGCCGACCCAGTCAAGCCCGGCCTGCTCATTGCGAAGCGCATTATAGGC--ATTTTGCAGCGCTTCGTATATTTTTTCGAAATTTGCAATTTGAC-GGCGCTCTTCCTGAAGAAGCTCGT Bacillus_methylotrophicus_CBMB205_T_NZ_CP011937 GCCGTGAGCAGGGAATAGACGCATCTGATGACATGATTGTCATGAGAAGGGACAT-CAATGCCGGAGGAAAAAGCGTCTGCCGTGTCAACGGAAAATTAGTGACGATTGCGGCTTTAAGGGAAATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATAACCAGCTGTTAATGGAGGACGATAAACACTTGGAGCTTTTGGACAGGTTTGCGGGCGCTGAGGCCGAATCCGCGCTTCAGGCTTACCATGAAGGCTATGAGCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAAAGCGAGCAGGAAATGGCGCATCGGTTAGACCTGATTCAATTTCAGCTTGAAGAAATCGAGTCGGCGAAGCTTGAATTGAATGAAGACGAACTTCTTCAGGAAGAGCGGAAGCAGATATCCAACTTTGAAAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGCGAGCAGGGGGGGCTTGACTGGGTCGGAATGGCCTCTGCCCAGCTTGAAGATATTTCGGATATCAATGAACCGCTGCAAAAGCTGTCAGAAAGTGTGTCAAGTTCCTATTATCTGCTGGAGGATGCAACCTTTCAGATGCGCAATCT--GTTAGATGATCTGGAATATGACCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAATGAGATCAAACAGCTGAAGCGCAAATACGGAGCGACGGTAGAAGACATTTTGGAATACGGCTCCAAAATAGAAGAGGAAATCGATCAA-ATCGAGAACCGCGAC-AGCCACCTTGAAGCGCTGAAGAAGGAATTGGAGTCGGTCGGCAAAGATGTGGCCGTAGAAGCCGCCAATTTATCAAAAATCAGAAAAGCTTGGGCTAAAAAACTGGCGGAA-GCGATTCATCAGGAATTAAAAAGT Bacillus_siamensis_KCTC_13613_T_NZ_AJVF01000041 GCCGAGAGCAGGGAATAGACGTATCTGACGACATGATTGTCATGAGAAGAGACAT-TAATGCCGGGGGAAAAAGCGTCTGCCGTGTCAACGGAAAATTAGTAACGATTGCGGCTTTGAGGGAGATCGGCAGACTTTTATTAGATATTCACGGGCAGCATGACAACCAGCTTTTAATGGAAGATGACAAACATTTAGAGCTTTTGGATAAATTTGCGGGCGCTGAGGCCGAATCAGCGCTTCAGGCATACCAAGAAGGCTACGACCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCGGAAAGCGAACAGGAAATGGCGCATCGGTTAGATCTGATCCAATTTCAGCTTGAAGAAATCGAATCAGCGAAGCTTGAATTGAATGAAGACGAACTTCTTCAAGAAGAGCGGAAGCAGATATCCAACTTTGAAAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTTCGCAGCGAACAGGGGGGGCTTGACTGGGTAGGAATGGCCTCTGCCCAGCTTGAAGACATTTCGGATATCAATGAACCGCTGCAAAAGCTGTCAGAAAGTGTGTCAAGTTCCTATTATCTGCTGGAGGATGCAACCTTTCAAATGCGCAATCT--GCTAGATGATCTGGAGTATGACCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAACGAGATTAAACAGCTGAAGCGTAAATACGGAGCGACGGTCGAAGACATTCTGGAATACGGCTCCAAAATAGAAGAGGAAATTGATCAA-ATCGAAAACCGCGAC-AGCCACCTTGAAGCGCTGAAGAAGGAACTGGAGTCCGTCGGCAAAGATGTGGCCGTAGAAGCCGCCAATTTATCAAAAATCAGAAAAGCCTGGGCGAAAAAACTGGCGGAA-GCAATTCATCAGGAATTAAAGAGC Bacillus_subtilis_KCTC_3135_T_CP015375 GCGCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATAT-CAGCACGAGCGGGAAAAGCGTTTGCCGTGTCAATGGCAAGCTTGTCACGATTGCTTCACTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATAACCAGCTGTTAATGGAAGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGGGCCGAAGTGGAAAGCGCGCTCAAAACGTATCAGGAAGGGTACCAGCGGTATGTGAAGCTGCTCAAAAAGCTTAAGCAGCTTTCTGAAAGCGAACAGGAAATGGCCCATCGTCTTGATCTTATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTTGAGCTTAACGAAGATGAACAGCTCCAAGAAGAGCGCCAGCAAATTTCAAACTTTGAGAAGATATATGAGTCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAGCAGGGCGGATTGGACTGGGTTGGAATGGCATCAGCGCAGCTTGAAGATATATCTGATATAAACGAACCGCTGAAAAAAATGTCTGAAAGTGTTTCGAACTCCTACTATTTGCTTGAGGATGCCACATTTCAGATGAGAAATAT--GCTGGATGAGCTTGAATTTGATCCGGAACGCCTGAACTATATTGAGACGCGACTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTTGAAGACATTTTGGAATATGCTTCTAAAATTGAAGAAGAGATTGACCAA-ATTGAAAACAGGGAC-AGCCACCTTCAAAGCTTGAAAAAGGAGCTTGACTCCGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTGTCACAAATCCGAAAAACATGGGCGAAAAAGCTGGCTGAT-GAGATTCATCGGGAATTAAAAAGC Bacillus_vallismortis_DSM_11031_T_NZ_JH600197 GCGCTGAGCAGGGAATTGACGTTTCAGACGAAATGATCATCATGAGGAGGGACAT-CAGCACGAGCGGAAAAAGCGTTTGCCGCATTAATGGCAAGCTTGTTACGATTGCCTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATAACCAGCTGTTAATGGAAGACGAAAATCATCTCCAGCTGTTGGACAAGTTTGCCGGAGCCGAAGCGGAAAGCGCGCTTCAAGCGTATCAGGAAGGGTATCAACGATATATGAAGCTGCTTAAAAAGCTAAAGCAGCTTTCTGAAAGCGAACAGGAAATGGCCCACCGTCTTGATCTCATTCAATTTCAGCTTGAAGAAATTGAATCGGCCAAGCTCGAGCTTAATGAAGATGAACAGCTTCAGGAAGAGCGCCAGCAATTTTCAAATTTTGAAAAGATCTATGAATCGCTGCAAAATGCATATAATGCGCTTCGAAGCGAGCAGGGCGGACTGGATTGGGTCGGAATGGCTTCAGCGCAGCTTGAAGATATATCCGATATTAACGAACCGCTGAAAAAGCTGTCTGAAAATGTGTCGAACTCCTACTATCTTTTGGAGGACGCTACATTTCAGATGAGAAATAT--GCTGGATGAGCTTGAATATGATCCGGAACGCCTGAATGATATTGAGACGCGTCTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCGTCTGTTGAGGATATTTTGGAATACGCTTCTAAAATTGAAGAAGAGATTGACCAA-ATAGAAAATAGAGAC-AGCCACCTTCAAAGTGTGAAGAAGGAGCTTGATTCAGTCGGCAAAGATGTCGCAGTGGAAGCGGAAAATGTTTCAAAAATCCGCAAAACATGGGCGAAAAAGCTGGCTGAT-GAGATTCATCGGGAATTAAAAAGC Bacillus_velezensis_CR_502_T_NZ_LHCC01000001 GCAGAGCACCTGTGAACCGGTCGATACTTTATGGATTTTTTCCGCGATGGCTTGGGCAACCCGCCCGCTTACACCGGTGTCCACTTCGTCA--AAGATGATGGAGGTGACATCCTGCTGGGAAGAAAAAATACTCTT----------CATCGCCAGCATCACCCTTGAAAGCTCGCCTCCGGAAGCGACCTTTGACAGCGGTTTTAAAGGCTCACCGGTGTTT--GTTGAAA-------TTAAAAACTTCACAAGGTCAATCCCCTTTTGGGTAAGCTGCACGGGCTGCCCGTTAA-CAACCGGTGCTTCACTGGCTGACGGATCGGTTTTCACGAGAAATTCCGTATCAAACGTGGATTTGCCCATATACAGACTTT---TTAATTCCTGATGAATCGCTTCCGCCAGTTTCTTAGCCCAAGCTTTTCTGATTTTTGATAAATTGGCGGCTTCTACGGCCACAT--CTTTGCCGACCGACTCCAATTCCTTCTTCAGCGCTTCAAGGTGGCTGTCGC---GGTTCTCGATTTGATCGATTTCCTCTTCTATTTTAGAGCCGTATTCCAAAATGT------CTTCTACCGTCGCTCCGTATTTGC---GCTTCAGCTGTTTAATTTCGTTTAAACGGGTTTCAATAAAATTCAGCCGTTCCGGGTCATATTCCAGATCATCTAAC--AGATTGCGCATCTGAAA-GGTTGCATCCTCCAGCAGATAATAGGAACTTGACACACTTTCAGACAGCTTTTGCAGCGGTTCATTGATATCCGAAATATCTTCAAGCTGGGCAGAGGCCATTCCGACCCAGTCAAGCCCCCCCTGCTCGCTGCGGAACGCATTATAGGC--GTTTTGCAATGATTCATAAATTTTTTCAAAATTGGATATCTGGCTTCCGTTCTTCCTGAAAAG-CTCGT BB6L_MH750310 GCAGAGCACCTGTGAACCGGTCGATACTTTATGGATTTTTTCCGCGATGGCTTGGGCAACCCGCCCGCTTACACCGGTGTCCACTTCGTCA--AAGATGATGGAGGTGACATCCTGCTGGGAAGAAAAAATACTCTT----------CATCGCCAGCATCACCCTTGAAAGCTCGCCTCCGGAAGCGACCTTTGACAGCGGTTTTAAAGGCTCACCGGTGTTT--GTTGAAA-------TTAAAAACTTCACAAGGTCAATCCCCTTTTGGGTAAGCTGCACGGGCTGCCCGTTAA-CAACCGGTGCTTCACTGGCTGACGGATCGGTTTTCACGAGAAATTCCGTATCAAACGTGGATTTGCCCATATACAGACTTT---TTAATTCCTGATGAATCGCTTCCGCCAGTTTCTTAGCCCAAGCTTTTCTGATTTTTGATAAATTGGCGGCTTCTACGGCCACAT--CTTTGCCGACCGACTCCAATTCCTTCTTCAGCGCTTCAAGGTGGCTGTCAC---GGTTCTCGATTTGATCGATTTCCTCTTCTATTTTAGAGCCGTATTCCAAAATGT------CTTCTACCGTCGCTCCGTATTTGC---GCTTCAGCTGTTTGATCTCATTTAAACGGGTTTCAATAAAATTCAGCCGTTCCGGGTCATATTCCAGATCATCTAAC--AGATTGCGCATCTGAAA-GGTTGCATCCTCCAGCAGATAATAGGAACTTGACACACTTTCTGACAGCTTTTGCAGCGGTTCATTGATATCCGAAATATCTTCTAGCTGAGCAGAGGCA--TCCGACCCA-TCAAGCAACACCTGCTCACTGCGGACCGCAATAGACGC--ATTTTGCTATGACATATA---TATTACATTGTTGGATATGC----TCAGCTCTTCCGGAAGAA-GAAGA GrB7L_MH750309 GCAGAGCACCTGTGAACCGGTCGATACTTTATGGATTTTTTCCGCGATGGCTTGGGCAACCCGCCCGCTTACACCGGTGTCCACTTCGTCA--AAGATGATGGAGGTGACATCCTGCTGGGAAGAAAAAATACTCTT----------CATCGCCAGCATCACCCTTGAAAGCTCGCCTCCGGAAGCGACCTTTGACAGCGGTTTTAAAGGCTCACCGGTGTTT--GTTGAAA-------TTAAAAACTTCACAAGGTCAATCCCCTTTTGGGTAAGCTGCACGGGCTGCCCGTTAA-CAACCGGTGCTTCACTGGCTGACGGATCGGTTTTCACGAGAAATTCCGTATCAAACGTGGATTTGCCCATATACAGACTTT---TTAATTCCTGATGAATCGCTTCCGCCAGTTTCTTAGCCCAAGCTTTTCTGATTTTTGATAAATTGGCGGCTTCTACGGCCACAT--CTTTGCCGACCGACTCCAATTCCTTCTTCAGCGCTTCAAGGTGGCTGTCAC---GGTTCTCGATTTGATCGATTTCCTCTTCTATTTTAGAGCCGTATTCCAAAATGT------CTTCTACCGTCGCTCCGTATTTGC---GCTTCAGCTGTTTGATCTCATTTAAACGGGTTTCAATAAAATTCAGCCGTTCCGGGTCATATTCCAGATCATCTAAC--AGATTGCGCATCTGAAA-GGTTGCATCCTCCAGCAGATAATAGGAACTTGACACACTTTCTGACAACTTTTGCAGCGGT-CATTGATATCCGAAATATCT--CAGCTGGGCAGAGGCCATTCCGACCCAGTCAAGACACAC-TGCTCAATGCGGAC-GCATTAGAGGC--GTTTTGC-GTGATCCATA---TCAGGC-TTAAAAACTGCAG----TTAAGTAA-CCGACTGAA-TAATT A6_MH750311 GCAGAGCACCTGTGAACCGGTCGATACTTTATGGATTTTTTCCGCGATGGCTTGGGCAACCCGCCCGCTTACACCGGTGTCCACTTCGTCA--AAGATGATGGAGGTGACATCCTGCTGGGAAGAAAAAATACTCTT----------CATCGCCAGCATCACCCTTGAAAGCTCGCCTCCGGAAGCGACCTTTGACAGCGGTTTTAAAGGCTCACCGGTGTTT--GTTGAAA-------TTAAAAACTTCACAAGGTCAATCCCCTTTTGGGTAAGCTGCACGGGCTGCCCGTTAA-CAACCGGTGCTTCACTGGCTGACGGATCGGTTTTCACGAGAAATTCCGTATCAAACGTGGATTTGCCCATATACAGACTTT---TTAATTCCTGATGAATCGCTTCCGCCAGTTTCTTAGCCCAAGCTTTTCTGATTTTTGATAAATTGGCGGCTTCTACGGCCACAT--CTTTGCCGACCGACTCCAATTCCTTCTTCAGCGCTTCAAGGTGGCTGTCGC---GGTTCTCGATTTGATCGATTTCCTCTTCTATTTTAGAGCCGTATTCCAAAATGT------CTTCTACCGTCGCTCCGTATTTGC---GCTTCAGCTGTTTAATTTCGTTTAAACGGGTTTCAATAAAATTCAGCCGTTCCGGGTCATATTCCAGATCATCTAAC--AGATTGCGCATCTGAAA-GGTTGCATCCTCCAGCAGATAATAGGAACTTGACACACTTTCAGACAGCTTTTGCAGCGGTTCATTGATATCCGAAATATCTTCAAGCTGGGCAGAGGCCATTCCGACCCAGTCAAGCCCCCCCTGCTCGCTGCGGAACGCATTATAGGC--GTTTTGCAATGATTCATAAATTTTTTCAAAATTGGATATCTGGCTTCCGTTCTTCCTGAAAAG-CTCGT ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 926; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 926; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 926; END; BEGIN TREES; Title recN_Bacillus_spp._NJ_analysis; ID 016b3dcea4561; LINK Taxa = Bacillus_app.; TRANSLATE [0] 1 Bacillus_amyloliquefaciens_DSM7_T_FN597644, [1] 2 Bacillus_coagulans_NBRC_12583_T_CP009709, [2] 3 Bacillus_licheniformis_DSM_13_T_AE017333, [3] 4 Bacillus_methylotrophicus_CBMB205_T_NZ_CP011937, [4] 5 Bacillus_siamensis_KCTC_13613_T_NZ_AJVF01000041, [5] 6 Bacillus_subtilis_KCTC_3135_T_CP015375, [6] 7 Bacillus_vallismortis_DSM_11031_T_NZ_JH600197, [7] 8 Bacillus_velezensis_CR_502_T_NZ_LHCC01000001, [8] 9 BB6L_MH750310, [9] 10 GrB7L_MH750309, [10] 11 A6_MH750311; TREE Imported_tree_1 = (((((8:0.0,11:0.0):0.00915941[%bootstrapFrequency = 0.999 ],(9:0.01757158,10:0.02918515):0.01620146[%bootstrapFrequency = 0.959 ]):0.03107009[%bootstrapFrequency = 0.979 ],1:0.02891857):0.08985284[%bootstrapFrequency = 0.987 ],3:0.22714642):0.04653861[%bootstrapFrequency = 0.524 ],2:0.36786641,((4:0.01351236,5:0.04812935):0.10609699[%bootstrapFrequency = 0.998 ],(6:0.04290549,7:0.0504725):0.06073947[%bootstrapFrequency = 0.967 ]):0.98115606[%bootstrapFrequency = 1 ])[% ] [% ] [% setBetweenDouble = bootstrapFrequency ]; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1560227913030; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2681791425926077555; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2255188258639179589; mqVersion 360; checksumv 0 3 718828539 null getNumChars 926 numChars 926 getNumTaxa 11 numTaxa 11 short true bits 15 states 15 sumSquaresStatesOnly 216609.0 sumSquares 216609.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 472; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #2681791425926077555 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #2681791425926077555; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 400; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2681791425926077555 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 016b3dcea4561; toggleUseWeights off; endTell; setAssignedID 1005.1560110088203.7749960351593936431; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 400; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; setSelectedTaxonHighlightMode 1; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; setTaxonNameStyler #mesquite.trees.NoColorForTaxon.NoColorForTaxon; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2255188258639179589 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 400; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;