#NEXUS [written Tue Jun 11 01:35:25 ART 2019 by Mesquite version 3.6 (build 917) at Nazareno-PC/192.168.56.1] BEGIN TAXA; TITLE Erwinia_spp.; DIMENSIONS NTAX=11; TAXLABELS Erwinia_pyrifoliae_ICMP_14143_T_HQ393633 Pantoea_theicola_QC88_366_T_AB914775 Erwinia_aphidicola_LMG_24877_T_FN547374 Erwinia_uzenensis_LMG_25843_T_KT073223 Erwinia_persicina_LMG_11254_T_HQ393634 Erwinia_billingiae_LMG_2613_T_EU145307 Erwinia_amylovora_LMG_2024_T_HQ393632 Enterobacter_cloacae_subsp._cloacae_LMG_2783_T_JX425236 Erwinia_tasmaniensis_NCPPB_4358_T_HQ393631 Erwinia_rhapontici_LMG_2688_T_EF989010 SB9L_MH750313 ; END; BEGIN CHARACTERS; TITLE rpoB_Erwinia_spp.; DIMENSIONS NCHAR=625; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Erwinia_pyrifoliae_ICMP_14143_T_HQ393633 TTGGGCGATCTGGATACCCTGATGCCTCAGGACATGATCAACGCCAAGCCAATTTCTGCGGCAGTGAAAGAGTTCTTCGGTTCCAGCCAGCTGTCACAGTTTATGGACCAGAACAACCCGTTGTCTGAGATTACGCACAAACGTCGTATCTCTGCACTCGGCCCGGGCGGTCTGACGCGTGAGCGTGCAGGCTTCGAAGTGCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACGCCAGAAGGTCCAAACATCGGTCTGATCAACTCCTTGTCTGTGTATGCACAGACCAACGAGTACGGTTTCCTGGAAACCCCATACCGCCGCGTGCGCGATGGCGTGGTGACCGACGAAATTCATTACCTCTCTGCCATTGAAGAGGGTAACTACGTTATCGCTCAGGCAAACACCAACCTCGACGACGAAGGCCACTTCGTAGACGACCTGGTGACCTGCCGTAGCAAAGGCGAATCGAGCCTGTTCAGCCGCGATCAGGTTGACTACATGGACGTTTCCACCCAGCAGGTGGTTTCCGTCGGTGCGTCACTGATCCCGTTCCTGGAACACGATGACGCCAACCGCGCATTGATGGGTGCAAACATGCAACGTCAGG Pantoea_theicola_QC88_366_T_AB914775 CTGGGCGACCTCGATACCCTGATGCCGCAGGATATGATTAACGCCAAGCCGATCTCTGCGGCGGTGAAAGAGTTCTTTGGTTCCAGCCAGCTGTCTCAGTTTATGGACCAGAACAACCCGCTGTCTGAGATTACGCACAAGCGTCGTATCTCTGCTCTGGGCCCAGGCGGTCTGACGCGTGAGCGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTATGGTCGCGTATGTCCAATCGAAACGCCGGAAGGCCCGAACATCGGTCTGATCAACTCCCTGTCGGTCTATGCGCAGACTAACGAATACGGCTTCCTTGAAACGCCGTATCGTCGCGTTATCGATGGCGTGGTCACCGACGAAATTCATTACCTCTCTGCTATTGAAGAGGGTAACTACGTTATTGCTCAGGCGAACACCAATCTCGACGACGAAGGTCACTTCGTAGACGACCTGGTGACCTGCCGTAGCAAAGGCGAATCGAGCCTGTTCAGCCGCGACCAGGTTGACTACATGGACGTTTCCACTCAGCAGGTGGTTTCTGTCGGTGCGTCCCTGATCCCGTTCCTGGAGCACGATGATGCTAACCGCGCCCTGATGGGTGCGAACATGCAACGTCAGG Erwinia_aphidicola_LMG_24877_T_FN547374 CTGGGCGACCTGGATACCCTGATGCCGCAGGACATGATCAACGCCAAGCCAATTTCTGCGGCAGTGAAAGAGTTCTTCGGCTCCAGCCAGCTGTCACAGTTTATGGACCAGAACAACCCGCTGTCTGAGATCACGCACAAGCGTCGTATCTCTGCACTCGGCCCGGGCGGTCTGACGCGTGAGCGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACGCCGGAAGGTCCAAACATCGGTCTGATCAACTCCCTCTCTGTATACGCACAGACGAATGAGTACGGTTTCCTTGAAACCCCATATCGTCGCGTGCGCGAAGGTGTGGTGACCGACGAAATTCATTACCTCTCTGCTATTGAAGAGGGTAACTACGTTATCGCTCAGGCTAACACCAACCTCGACGACGAAGGTCACTTCGTAGACGATCTGGTGACTTGCCGTAGCAAAGGCGAATCAAGTCTGTTCAGCCGCGATCAGGTTGACTACATGGACGTTTCCACCCAGCAGGTGGTTTCCGTCGGTGCGTCACTGATCCCGTTCCTGGAACACGATGACGCCAACCGCGCATTGATGGGTGCAAACATGCAACGTCAGG Erwinia_uzenensis_LMG_25843_T_KT073223 CTGGGCGATCTGGATACCCTGATGCCTCAGGATATGATCAACGCCAAGCCAATTTCTGCGGCTGTGAAAGAGTTCTTCGGTTCCAGCCAGCTGTCACAGTTTATGGACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCTGCACTCGGCCCTGGCGGTCTGACGCGTGAGCGTGCAGGCTTTGAAGTGCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACGCCAGAAGGTCCAAACATCGGTCTGATCAACTCCTTGTCTGTCTATGCACAGACCAACGAGTACGGTTTCCTGGAAACCCCATATCGTCGCGTGCGCGATGGCGTGGTGACCGACGAAATTCATTACCTCTCTGCCATTGAAGAGGGTAACTACGTTATCGCTCAGGCCAACACCAATCTTGACGACGAAGGTCACTTCGTTGACGACCTGGTGACCTGCCGTAGCAAAGGCGAATCGAGCCTGTTCAGCCGCGATCAGGTTGACTACATGGACGTTTCCACCCAACAGGTGGTTTCCGTCGGTGCGTCACTGATCCCGTTCCTGGAACACGATGACGCCAACCGCGCATTGATGGGTGCAAACATGCAACGTCAGG Erwinia_persicina_LMG_11254_T_HQ393634 CTGGGCGATCTGGATACCCTGATGCCACAGGACATGATCAACGCCAAGCCAATTTCTGCGGCAGTGAAAGAGTTCTTCGGCTCCAGCCAGCTGTCACAGTTTATGGACCAGAACAACCCGTTGTCTGAGATCACGCATAAGCGTCGTATCTCTGCACTGGGTCCGGGCGGTCTGACGCGTGAGCGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACGCACTACGGTCGCGTATGTCCAATCGAAACGCCGGAAGGTCCAAACATCGGTCTGATCAACTCCTTGTCTGTGTATGCACAGACCAATGAGTACGGTTTCCTGGAAACCCCATACCGTCGCGTTCGCGAAGGCGTGGTGACCGACGAAATTCATTACCTCTCTGCTATTGAAGAGGGTAACTACGTTATCGCTCAGGCAAACACCAATCTCGACGACGAAGGTCACTTCGTAGACGACCTGGTCACCTGCCGTAGCAAAGGCGAATCGAGTCTCTTCAACCGCGATCAAGTTGACTACATGGACGTTTCCACCCAGCAGGTGGTTTCCGTCGGTGCGTCACTGATCCCGTTCCTGGAGCACGATGACGCCAACCGCGCATTGATGGGTGCAAACATGCAACGTCAGG Erwinia_billingiae_LMG_2613_T_EU145307 TTAGGCGATCTGGATACCCTGATGCCTCAGGACATGATCAACGCCAAGCCAATTTCTGCAGCAGTGAAAGAGTTCTTTGGTTCCAGCCAGCTGTCCCAGTTTATGGACCAGAACAACCCACTGTCTGAGATTACGCACAAACGTCGTATCTCTGCACTTGGCCCGGGCGGTCTGACGCGTGAGCGTGCAGGCTTTGAAGTTCGAGACGTTCACCCGACGCACTACGGTCGCGTGTGCCCAATCGAAACGCCTGAAGGTCCAAACATCGGTCTGATCAACTCCTTGTCCGTGTACGCACAGACCAATGAGTACGGTTTCCTGGAAACCCCATACCGTCGCGTTCGCGAAGGCGTGGTGACCGACGAAATTCATTACCTCTCTGCAATTGAAGAGGGTAACTACGTTATCGCTCAGGCTAACACCAACCTCGACGACGAAGGTCACTTCGTAGACGATCTGGTTACTTGCCGTAGTAAAGGCGAATCGAGCTTGTTCAGCCGCGATCAGGTTGACTACATGGACGTATCCACCCAGCAGATCGTTTCTGTTGGTGCGTCACTGATCCCGTTCCTGGAGCACGATGACGCCAACCGCGCATTGATGGGTGCAAACATGCAACGTCAGG Erwinia_amylovora_LMG_2024_T_HQ393632 CTGGGCGATCTGGATACCTTGATGCCACAGGACATGATCAACGCCAAGCCAATTTCTGCGGCAGTGAAGGAGTTCTTCGGCTCCAGCCAGCTGTCACAGTTTATGGATCAGAACAACCCGCTGTCTGAGATCACGCACAAACGTCGTATCTCTGCACTTGGCCCGGGCGGTCTGACGCGTGAACGTGCGGGCTTCGAAGTGCGAGACGTACACCCGACTCACTATGGTCGCGTATGTCCAATCGAAACCCCGGAAGGTCCGAACATCGGTTTGATCAACTCCTTGTCTGTCTATGCACAGACCAACGAGTACGGTTTCCTGGAAACCCCATACCGTCGCGTGCGCGATGGCGTGGTGACCGACGAAATTCATTACCTCTCTGCCATTGAAGAGGGTAACTACGTTATTGCTCAGGCAAACACCAACCTCGACGACGAAGGTCACTTCGTTGACGACCTGGTGACCTGCCGCAGCAAAGGCGAATCGAGCCTGTTCAGCCGCGATCAGGTTGACTACATGGACGTTTCCACCCAGCAGGTGGTTTCCGTTGGTGCGTCACTGATCCCGTTCCTGGAACACGATGACGCCAACCGCGCATTGATGGGTGCAAACATGCAACGTCAGG Enterobacter_cloacae_subsp._cloacae_LMG_2783_T_JX425236 CTGGGCGATCTGGATACCCTGATGCCTCAGGATATGATCAACGCCAAGCCGATTTCTGCAGCAGTGAAAGAGTTCTTTGGTTCCAGCCAGCTGTCTCAGTTCATGGACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCTGCACTCGGCCCAGGCGGTCTGACCCGTGAACGCGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACGCCTGAAGGTCCAAACATCGGTCTGATCAACTCCCTGTCCGTGTACGCACAGACAAACGAATACGGTTTCCTTGAGACCCCGTACCGTAAAGTGACTGACGGTGTTGTTACCGACGAAATTCATTACCTGTCTGCTATTGAAGAAGGCAACTACGTTATCGCTCAGGCGAACTCCAACCTGGATGACGAAGGCCACTTTGTAGAAGATCTGGTTACCTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGACGTATCCACCCAGCAGGTGGTATCCGTCGGTGCGTCCCTGATCCCGTTCCTGGAACACGATGACGCCAACCGTGCATTGATGGGTGCGAACATGCAACGTCAGG Erwinia_tasmaniensis_NCPPB_4358_T_HQ393631 CTGGGCGATCTGGATACCCTGATGCCTCAGGATATGATCAACGCCAAGCCAATTTCTGCGGCGGTGAAAGAGTTCTTCGGTTCCAGCCAGCTGTCACAGTTTATGGACCAGAACAACCCGTTGTCTGAGATCACGCACAAACGTCGTATCTCTGCATTGGGTCCAGGCGGTCTGACGCGTGAGCGTGCAGGCTTCGAAGTGCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACGCCGGAAGGTCCAAACATCGGTCTAATCAACTCCTTGTCTGTCTATGCACAGACCAATGAGTACGGTTTCCTGGAAACTCCATACCGCCGCGTACGCGATGGCGTGGTGACCGACGAAATTCATTACCTCTCTGCTATTGAAGAGGGTAACTACGTTATCGCTCAGGCCAACACCAACCTCGATGACGAAGGTCACTTCGTAGACGATTTGGTGACCTGCCGTAGCAAAGGCGAATCGAGCCTGTTCAGCCGCGATCAGGTTGACTACATGGACGTTTCCACCCAGCAGGTGGTTTCCGTCGGTGCGTCACTGATCCCGTTCCTGGAGCACGATGACGCCAACCGCGCATTGATGGGTGCAAACATGCAACGTCAGG Erwinia_rhapontici_LMG_2688_T_EF989010 CTGGGCGATCTGGATACCCTGATGCCACAGGACATGATCAACGCCAAGCCAATTTCAGCGGCAGTGAAAGAGTTCTTCGGTTCCAGCCAGCTGTCACAGTTTATGGACCAGAACAACCCGTTGTCAGAGATCACGCATAAGCGTCGTATTTCTGCACTGGGCCCGGGCGGTCTGACGCGTGAGCGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACGCCGGAAGGTCCAAACATCGGTCTGATCAACTCCTTGTCTGTTTATGCACAGACCAATGAGTATGGTTTCCTGGAAACCCCATACCGTCGCGTTCGCGAAGGCGTGGTGACCGACGAAATTCATTACCTCTCTGCTATTGAAGAGGGTAACTACGTTATCGCTCAGGCGAACACCAACCTCGACGACGAAGGTCACTTCGTAGACGATCTGGTGACCTGCCGTAGCAAAGGCGAATCGAGCCTCTTCAACCGTGACCAGGTTGACTACATGGACGTTTCCACCCAGCAGAGCGTTTCCGTCGGTGCGTCACTGATCCCGTTCCTGGAGCACGATGACGCCAACCGCGCATTGATGGGTGCAAACATGCAACGTCAGG SB9L_MH750313 CTGGGCGACCTGGATACCCTGATGCCGCAGGACATGATCAACGCCAAGCCAATTTCTGCGGCAGTGAAAGAGTTCTTCGGCTCCAGCCAGCTGTCACAGTTTATGGACCAGAACAACCCGCTGTCTGAGATCACGCACAAGCGTCGTATCTCTGCACTCGGCCCGGGCGGTCTGACGCGTGAGCGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACGCCGGAAGGTCCAAACATCGGTCTGATCAACTCCCTCTCTGTATACGCACAGACGAATGAATACGGTTTCCTTGAAACCCCATATCGTCGCGTGCGCGAAGGTGTGGTGACCGACGAAATTCATTACCTCTCTGCTATTGAAGAGGGTAACTACGTTATCGCTCAGGCGAACACCAACCTCGACGACGAAGGTCACTTCGTAGACGATCTGGTGACTTGCCGTAGCAAAGGCGAATCAAGTCTGTTCAGCCGCGATCAGGTTGACTACATGGACGTTTCCACCCAGCAGGTGGTTTCCGTCGGTGCGTCACTGATCCCGTTCCTGGAACACGATGACGCCAACCGCGCATTGATGGGTGCAAACATGCAACGTCAGG ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 625; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 625; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 625; END; BEGIN TREES; Title rpoB_Erwinia_spp._NJ_analysis; ID 016b32f570fe6; LINK Taxa = Erwinia_spp.; TRANSLATE [0] 1 Erwinia_pyrifoliae_ICMP_14143_T_HQ393633, [1] 2 Pantoea_theicola_QC88_366_T_AB914775, [2] 3 Erwinia_aphidicola_LMG_24877_T_FN547374, [3] 4 Erwinia_uzenensis_LMG_25843_T_KT073223, [4] 5 Erwinia_persicina_LMG_11254_T_HQ393634, [5] 6 Erwinia_billingiae_LMG_2613_T_EU145307, [6] 7 Erwinia_amylovora_LMG_2024_T_HQ393632, [7] 8 Enterobacter_cloacae_subsp._cloacae_LMG_2783_T_JX425236, [8] 9 Erwinia_tasmaniensis_NCPPB_4358_T_HQ393631, [9] 10 Erwinia_rhapontici_LMG_2688_T_EF989010, [10] 11 SB9L_MH750313; TREE Imported_tree_1 = (((((((4:0.01563899,7:0.02908349):0.00063299[%bootstrapFrequency = 0.281 ],1:0.00908599):0.0054207[%bootstrapFrequency = 0.656 ],9:0.02120448):0.00365913[%bootstrapFrequency = 0.453 ],(5:0.01257064,10:0.01925195):0.01025847[%bootstrapFrequency = 0.924 ]):0.00167788[%bootstrapFrequency = 0.379 ],6:0.04274231):0.00337789[%bootstrapFrequency = 0.456 ],(3:0.00130827,11:0.00190588):0.02052343[%bootstrapFrequency = 1 ]):0.01360642[%bootstrapFrequency = 0.816 ],2:0.05105218,8:0.0651837)[% ] [% ] [% setBetweenDouble = bootstrapFrequency ]; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1560227726159; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 830413196965221899; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8197186709401420019; mqVersion 360; checksumv 0 3 3156093578 null getNumChars 625 numChars 625 getNumTaxa 11 numTaxa 11 short true bits 15 states 15 sumSquaresStatesOnly 134417.0 sumSquares 134417.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 472; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #830413196965221899 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #830413196965221899; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 400; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #830413196965221899 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 016b32f570fe6; toggleUseWeights off; endTell; setAssignedID 1750.1559928084144.307744996438276243; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 400; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; setSelectedTaxonHighlightMode 1; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; setTaxonNameStyler #mesquite.trees.NoColorForTaxon.NoColorForTaxon; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8197186709401420019 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 400; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;