#NEXUS [written Wed Jul 24 14:44:49 CEST 2019 by Mesquite version 3.40 (build 877) at ANTON/192.168.56.1] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=100; TAXLABELS Bacteriastrum_elegans_Na25A3 Bacteriastrum_furcatum_2_Na8A3 Bacteriastrum_jadranum_Na19C1 Bacteriastrum_jadranum_Na19C3 Bacteriastrum_hyalinum_Na10B1 Chaetoceros_affinis_Na49A2 Chaetoceros_diversus_1_Na23B1 Chaetoceros_diversus_1_Na3C1 Chaetoceros_diversus_1_Na5B2 Chaetoceros_diversus_1_Na50B2 Chaetoceros_circinalis_Na15C2 Chaetoceros_sp._Clade_Na12A3_Na9A3 Chaetoceros_sp._Clade_Na17B2_Na17B2 Chaetoceros_sp._Clade_Na13C2_Na13C2 Chaetoceros_anastomosans_Na14C2 Chaetoceros_anastomosans_Na14C3 Chaetoceros_cf._vixvisibilis_Na25C3 Chaetoceros_cf._vixvisibilis_Na28A4 Chaetoceros_sp._Clade_Na11C3_Na11C3 Chaetoceros_sp._Clade_Na11C3_Na43A1 Chaetoceros_sp._Clade_Na26B1_Na26B1 Chaetoceros_sp._Clade_Na28A1_Na28A1 Chaetoceros_sp._Clade_Va7D2_Na43A4 Chaetoceros_sp._Clade_Va7D2_Na44B3 Chaetoceros_constrictus_Ch12C1 Chaetoceros_decipiens_Na28A2 Chaetoceros_cf._decipiens_El6B1 Chaetoceros_lorenzianus_2_Ch11A1 Chaetoceros_lorenzianus_2_Ch13B4 Chaetoceros_lorenzianus_2_Ch4A3 Chaetoceros_lorenzianus_2_Ch4C4 Chaetoceros_elegans_Ch12A1 Chaetoceros_lorenzianus_1_Ch11C1 Chaetoceros_lorenzianus_1_Ch4C3 Chaetoceros_cf._lorenzianus_El1A4 Chaetoceros_throndsenii_Na45B3 Chaetoceros_diadema_1_Ch4A1 Chaetoceros_diadema_1_Na13B1 Chaetoceros_diadema_2_Ch5C1 Chaetoceros_rotosporus_Na22B1 Chaetoceros_rotosporus_Na23A1 Chaetoceros_brevis_1_Na7B1 Chaetoceros_brevis_2_Na7C2 Chaetoceros_brevis_3_Ch9B3 Chaetoceros_lauderi_Na13A4 Chaetoceros_lauderi_Na2A1 Chaetoceros_lauderi_Na34C3 Chaetoceros_lauderi_Na36A1 Chaetoceros_teres_Ch13B2 Chaetoceros_teres_Ch5A1 Chaetoceros_cf._tortissimus_Na18C4 Chaetoceros_cf._tortissimus_Na28B3 Chaetoceros_tortissimus_Na25A2 Chaetoceros_curvisetus_1_Na10C1 Chaetoceros_curvisetus_1_Ro3B2 Chaetoceros_curvisetus_3_El4A2 Chaetoceros_curvisetus_3_Na3C4 Chaetoceros_pseudocurvisetus_Na13C4 Chaetoceros_curvisetus_2a_Na1C1 Chaetoceros_curvisetus_2b_Ch5B1 Chaetoceros_curvisetus_2c_El6A2 Chaetoceros_debilis_2_MM24A3 Chaetoceros_debilis_2_MM24C3 Chaetoceros_debilis_3_Ch1A1 Chaetoceros_debilis_3_Ch9A3 Chaetoceros_cinctus_Ch3C4 Chaetoceros_radicans_Ch10A3 Chaetoceros_radicans_Ch11A4 Chaetoceros_dichatoensis_Ch1B3 Chaetoceros_sporotruncatus_Ch2A4 Chaetoceros_sporotruncatus_Ch9C4 Chaetoceros_socialis_Na33B1 Chaetoceros_costatus_Na1A3 Chaetoceros_costatus_Ro1B1 Chaetoceros_costatus_Ro2A2 Chaetoceros_tenuissimus_Na26A1 Chaetoceros_tenuissimus_Na36B4 Chaetoceros_tenuissimus_Na44A1 Chaetoceros_contortus_cf._var._contortus_Na31B2 Chaetoceros_contortus_Ch12A4 Chaetoceros_cf._convolutus_Ch5C4 Chaetoceros_danicus_Na9B4 Chaetoceros_cf._convolutus_L7B6 Chaetoceros_peruvianus_1_newEA1 Chaetoceros_peruvianus_2_Ch11B4 Chaetoceros_rostratus_Na1C3 Chaetoceros_rostratus_newDA3 Chaetoceros_cf._pseudodichaeta_EL1C1 Chaetoceros_eibenii_Ch8C3 Chaetoceros_eibenii_Ro1B2 Chaetoceros_didymus_1_Ch6A3 Chaetoceros_didymus_2_Na20B4 Chaetoceros_protuberans_Ch8C2 Detonula_confervacea_CCMP353 Thalassiosira_pseudonana_CCMP1335 Hydrosera_sp._CYTX025 Terpsinoe_musica_NHOP43 Bacteriastrum_parallelum_newLA2 Bacteriastrum_mediterraneum_Na1C4 Bacteriastrum_mediterraneum_Na29B3 ; END; BEGIN TREES; Title 'Concatenated Maximum Parsimony (MP) tree'; ID 016c240202979; LINK Taxa = Taxa; TRANSLATE [0] 1 Bacteriastrum_elegans_Na25A3, [1] 2 Bacteriastrum_furcatum_2_Na8A3, [2] 3 Bacteriastrum_jadranum_Na19C1, [3] 4 Bacteriastrum_jadranum_Na19C3, [4] 5 Bacteriastrum_hyalinum_Na10B1, [5] 6 Chaetoceros_affinis_Na49A2, [6] 7 Chaetoceros_diversus_1_Na23B1, [7] 8 Chaetoceros_diversus_1_Na3C1, [8] 9 Chaetoceros_diversus_1_Na5B2, [9] 10 Chaetoceros_diversus_1_Na50B2, [10] 11 Chaetoceros_circinalis_Na15C2, [11] 12 Chaetoceros_sp._Clade_Na12A3_Na9A3, [12] 13 Chaetoceros_sp._Clade_Na17B2_Na17B2, [13] 14 Chaetoceros_sp._Clade_Na13C2_Na13C2, [14] 15 Chaetoceros_anastomosans_Na14C2, [15] 16 Chaetoceros_anastomosans_Na14C3, [16] 17 Chaetoceros_cf._vixvisibilis_Na25C3, [17] 18 Chaetoceros_cf._vixvisibilis_Na28A4, [18] 19 Chaetoceros_sp._Clade_Na11C3_Na11C3, [19] 20 Chaetoceros_sp._Clade_Na11C3_Na43A1, [20] 21 Chaetoceros_sp._Clade_Na26B1_Na26B1, [21] 22 Chaetoceros_sp._Clade_Na28A1_Na28A1, [22] 23 Chaetoceros_sp._Clade_Va7D2_Na43A4, [23] 24 Chaetoceros_sp._Clade_Va7D2_Na44B3, [24] 25 Chaetoceros_constrictus_Ch12C1, [25] 26 Chaetoceros_decipiens_Na28A2, [26] 27 Chaetoceros_cf._decipiens_El6B1, [27] 28 Chaetoceros_lorenzianus_2_Ch11A1, [28] 29 Chaetoceros_lorenzianus_2_Ch13B4, [29] 30 Chaetoceros_lorenzianus_2_Ch4A3, [30] 31 Chaetoceros_lorenzianus_2_Ch4C4, [31] 32 Chaetoceros_elegans_Ch12A1, [32] 33 Chaetoceros_lorenzianus_1_Ch11C1, [33] 34 Chaetoceros_lorenzianus_1_Ch4C3, [34] 35 Chaetoceros_cf._lorenzianus_El1A4, [35] 36 Chaetoceros_throndsenii_Na45B3, [36] 37 Chaetoceros_diadema_1_Ch4A1, [37] 38 Chaetoceros_diadema_1_Na13B1, [38] 39 Chaetoceros_diadema_2_Ch5C1, [39] 40 Chaetoceros_rotosporus_Na22B1, [40] 41 Chaetoceros_rotosporus_Na23A1, [41] 42 Chaetoceros_brevis_1_Na7B1, [42] 43 Chaetoceros_brevis_2_Na7C2, [43] 44 Chaetoceros_brevis_3_Ch9B3, [44] 45 Chaetoceros_lauderi_Na13A4, [45] 46 Chaetoceros_lauderi_Na2A1, [46] 47 Chaetoceros_lauderi_Na34C3, [47] 48 Chaetoceros_lauderi_Na36A1, [48] 49 Chaetoceros_teres_Ch13B2, [49] 50 Chaetoceros_teres_Ch5A1, [50] 51 Chaetoceros_cf._tortissimus_Na18C4, [51] 52 Chaetoceros_cf._tortissimus_Na28B3, [52] 53 Chaetoceros_tortissimus_Na25A2, [53] 54 Chaetoceros_curvisetus_1_Na10C1, [54] 55 Chaetoceros_curvisetus_1_Ro3B2, [55] 56 Chaetoceros_curvisetus_3_El4A2, [56] 57 Chaetoceros_curvisetus_3_Na3C4, [57] 58 Chaetoceros_pseudocurvisetus_Na13C4, [58] 59 Chaetoceros_curvisetus_2a_Na1C1, [59] 60 Chaetoceros_curvisetus_2b_Ch5B1, [60] 61 Chaetoceros_curvisetus_2c_El6A2, [61] 62 Chaetoceros_debilis_2_MM24A3, [62] 63 Chaetoceros_debilis_2_MM24C3, [63] 64 Chaetoceros_debilis_3_Ch1A1, [64] 65 Chaetoceros_debilis_3_Ch9A3, [65] 66 Chaetoceros_cinctus_Ch3C4, [66] 67 Chaetoceros_radicans_Ch10A3, [67] 68 Chaetoceros_radicans_Ch11A4, [68] 69 Chaetoceros_dichatoensis_Ch1B3, [69] 70 Chaetoceros_sporotruncatus_Ch2A4, [70] 71 Chaetoceros_sporotruncatus_Ch9C4, [71] 72 Chaetoceros_socialis_Na33B1, [72] 73 Chaetoceros_costatus_Na1A3, [73] 74 Chaetoceros_costatus_Ro1B1, [74] 75 Chaetoceros_costatus_Ro2A2, [75] 76 Chaetoceros_tenuissimus_Na26A1, [76] 77 Chaetoceros_tenuissimus_Na36B4, [77] 78 Chaetoceros_tenuissimus_Na44A1, [78] 79 Chaetoceros_contortus_cf._var._contortus_Na31B2, [79] 80 Chaetoceros_contortus_Ch12A4, [80] 81 Chaetoceros_cf._convolutus_Ch5C4, [81] 82 Chaetoceros_danicus_Na9B4, [82] 83 Chaetoceros_cf._convolutus_L7B6, [83] 84 Chaetoceros_peruvianus_1_newEA1, [84] 85 Chaetoceros_peruvianus_2_Ch11B4, [85] 86 Chaetoceros_rostratus_Na1C3, [86] 87 Chaetoceros_rostratus_newDA3, [87] 88 Chaetoceros_cf._pseudodichaeta_EL1C1, [88] 89 Chaetoceros_eibenii_Ch8C3, [89] 90 Chaetoceros_eibenii_Ro1B2, [90] 91 Chaetoceros_didymus_1_Ch6A3, [91] 92 Chaetoceros_didymus_2_Na20B4, [92] 93 Chaetoceros_protuberans_Ch8C2, [93] 94 Detonula_confervacea_CCMP353, [94] 95 Thalassiosira_pseudonana_CCMP1335, [95] 96 Hydrosera_sp._CYTX025, [96] 97 Terpsinoe_musica_NHOP43, [97] 98 Bacteriastrum_parallelum_newLA2, [98] 99 Bacteriastrum_mediterraneum_Na1C4, [99] 100 Bacteriastrum_mediterraneum_Na29B3; TREE Imported_tree_1 = (1,(2,(3,4)[%bootstrapFrequency = 0.9954 ])[%bootstrapFrequency = 1 ],(((5,(((((((6,(7,((8,9)[%bootstrapFrequency = 0.7263 ],10)[%bootstrapFrequency = 0.7368 ])[%bootstrapFrequency = 0.9996 ])[%bootstrapFrequency = 1 ],(11,(12,13)[%bootstrapFrequency = 0.9985 ])[%bootstrapFrequency = 0.9911 ])[%bootstrapFrequency = 0.998 ],14)[%bootstrapFrequency = 1 ],((((15,16)[%bootstrapFrequency = 1 ],((17,18)[%bootstrapFrequency = 1 ],((19,20)[%bootstrapFrequency = 0.7375 ],21)[%bootstrapFrequency = 1 ])[%bootstrapFrequency = 0.9295 ])[%bootstrapFrequency = 0.902 ],22)[%bootstrapFrequency = 0.8878 ],(23,24)[%bootstrapFrequency = 1 ])[%bootstrapFrequency = 1 ],25,(((((26,27)[%bootstrapFrequency = 0.999 ],(28,(29,30,31)[%bootstrapFrequency = 0.7319 ])[%bootstrapFrequency = 1 ])[%bootstrapFrequency = 0.9809 ],32)[%bootstrapFrequency = 1 ],(33,(34,35)[%bootstrapFrequency = 0.999 ])[%bootstrapFrequency = 0.999 ])[%bootstrapFrequency = 1 ],36)[%bootstrapFrequency = 0.6252 ],(((37,38)[%bootstrapFrequency = 0.6977 ],39)[%bootstrapFrequency = 1 ],(40,41)[%bootstrapFrequency = 1 ])[%bootstrapFrequency = 0.991 ])[%bootstrapFrequency = 1 ],((((42,43)[%bootstrapFrequency = 0.9023 ],44)[%bootstrapFrequency = 1 ],((45,46,47,48)[%bootstrapFrequency = 1 ],(49,50)[%bootstrapFrequency = 1 ])[%bootstrapFrequency = 1 ])[%bootstrapFrequency = 1 ],(((((51,52)[%bootstrapFrequency = 1 ],53)[%bootstrapFrequency = 1 ],(((54,55)[%bootstrapFrequency = 1 ],(56,57)[%bootstrapFrequency = 1 ],58)[%bootstrapFrequency = 0.6325 ],((59,60)[%bootstrapFrequency = 1 ],61)[%bootstrapFrequency = 1 ])[%bootstrapFrequency = 1 ])[%bootstrapFrequency = 0.5566 ],((62,63)[%bootstrapFrequency = 1 ],(64,65)[%bootstrapFrequency = 1 ])[%bootstrapFrequency = 1 ])[%bootstrapFrequency = 0.9445 ],((((66,(67,68)[%bootstrapFrequency = 1 ])[%bootstrapFrequency = 1 ],((69,(70,71)[%bootstrapFrequency = 1 ])[%bootstrapFrequency = 1 ],72)[%bootstrapFrequency = 0.8814 ])[%bootstrapFrequency = 1 ],(73,(74,75)[%bootstrapFrequency = 0.9662 ])[%bootstrapFrequency = 1 ])[%bootstrapFrequency = 0.6416 ],((76,77)[%bootstrapFrequency = 0.6341 ],78)[%bootstrapFrequency = 1 ])[%bootstrapFrequency = 0.8692 ])[%bootstrapFrequency = 0.7378 ])[%bootstrapFrequency = 0.9791 ],(79,80)[%bootstrapFrequency = 1 ])[%bootstrapFrequency = 0.699 ],((((((81,82)[%bootstrapFrequency = 0.9918 ],83)[%bootstrapFrequency = 0.973 ],((84,85)[%bootstrapFrequency = 0.5501 ],(86,87)[%bootstrapFrequency = 1 ])[%bootstrapFrequency = 1 ])[%bootstrapFrequency = 1 ],88)[%bootstrapFrequency = 0.998 ],(89,90)[%bootstrapFrequency = 1 ])[%bootstrapFrequency = 0.507 ],((91,92)[%bootstrapFrequency = 1 ],93)[%bootstrapFrequency = 1 ])[%bootstrapFrequency = 0.8893 ])[%bootstrapFrequency = 0.5433 ],((94,95)[%bootstrapFrequency = 1 ],(96,97)[%bootstrapFrequency = 0.9925 ])[%bootstrapFrequency = 0.9929 ])[%bootstrapFrequency = 1 ])[%bootstrapFrequency = 1 ],98)[%bootstrapFrequency = 0.907 ],(99,100)[%bootstrapFrequency = 1 ])[%bootstrapFrequency = 1 ]); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1563972289071; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 9067649777692396372; endTell; getWindow; tell It; suppress; setResourcesState false false 198; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 944; setLocation -9 -9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #9067649777692396372 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #9067649777692396372; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1722 872; setLocation -9 -9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #9067649777692396372 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 016c240202979; toggleUseWeights off; endTell; setAssignedID 1584.1563972227934.8065141329564405872; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1722 872; setLocation -9 -9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(((94,95),(96,97)),((5,(98,((99,100),(1,(2,(3,4)))))),(((93,(91,92)),((89,90),(88,((83,(81,82)),((84,85),(86,87)))))),((79,80),(25,((40,41),(39,(37,38))),(14,((11,(12,13)),(6,(7,(10,(8,9)))))),((23,24),(22,((15,16),((17,18),(21,(19,20)))))),(36,((33,(34,35)),(32,((26,27),(28,(29,30,31))))))),(((44,(42,43)),((49,50),(45,46,47,48))),(((78,(76,77)),((73,(74,75)),((66,(67,68)),(72,(69,(70,71)))))),(((62,63),(64,65)),((53,(51,52)),((61,(59,60)),(58,(54,55),(56,57)))))))))));'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow bootstrapFrequency; toggleShow posteriorProbability; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 0; setThreshold ?; writeAsPercentage on; toggleCentred off; toggleHorizontal on; toggleWhiteEdges off; toggleShowOnTerminals on; setFontSize 10; setOffset -2 9; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;