#NEXUS [written Wed Jul 24 14:41:56 CEST 2019 by Mesquite version 3.40 (build 877) at ANTON/192.168.56.1] BEGIN TAXA; TITLE 'Maximum Likelihood (ML) tree of nuclear 18S and 28S genes'; DIMENSIONS NTAX=97; TAXLABELS Bacteriastrum_hyalinum_Na10B1 Bacteriastrum_mediterraneum_Na1C4 Bacteriastrum_mediterraneum_Na29B3 Bacteriastrum_jadranum_Na19C3 Bacteriastrum_jadranum_Na19C1 Bacteriastrum_furcatum_2_Na8A3 Bacteriastrum_elegans_Na25A3 Bacteriastrum_parallelum_newLA2 Chaetoceros_protuberans_Ch8C2 Chaetoceros_didymus_2_Na20B4 Chaetoceros_didymus_1_Ch6A3 Chaetoceros_eibenii_Ro1B2 Chaetoceros_eibenii_Ch8C3 Chaetoceros_cf._pseudodichaeta_EL1C1 Chaetoceros_danicus_Na9B4 Chaetoceros_cf._convolutus_Ch5C4 Chaetoceros_cf._convolutus_L7B6 Chaetoceros_peruvianus_2_Ch11B4 Chaetoceros_rostratus_Na1C3 Chaetoceros_rostratus_newDA3 Chaetoceros_peruvianus_1_newEA1 Chaetoceros_contortus_Ch12A4 Chaetoceros_contortus_cf._var._contortus_Na31B2 Chaetoceros_tortissimus_Na25A2 Chaetoceros_cf._tortissimus_Na28B3 Chaetoceros_cf._tortissimus_Na18C4 Chaetoceros_curvisetus_1_Ro3B2 Chaetoceros_curvisetus_1_Na10C1 Chaetoceros_curvisetus_3_El4A2 Chaetoceros_curvisetus_3_Na3C4 Chaetoceros_pseudocurvisetus_Na13C4 Chaetoceros_curvisetus_2c_El6A2 Chaetoceros_curvisetus_2a_Na1C1 Chaetoceros_curvisetus_2b_Ch5B1 Chaetoceros_debilis_2_MM24A3 Chaetoceros_debilis_2_MM24C3 Chaetoceros_debilis_3_Ch9A3 Chaetoceros_debilis_3_Ch1A1 Chaetoceros_tenuissimus_Na26A1 Chaetoceros_tenuissimus_Na44A1 Chaetoceros_cinctus_Ch3C4 Chaetoceros_radicans_Ch11A4 Chaetoceros_radicans_Ch10A3 Chaetoceros_dichatoensis_Ch1B3 Chaetoceros_sporotruncatus_Ch9C4 Chaetoceros_sporotruncatus_Ch2A4 Chaetoceros_socialis_Na33B1 Chaetoceros_costatus_Na1A3 Chaetoceros_costatus_Ro1B1 Chaetoceros_costatus_Ro2A2 Chaetoceros_brevis_3_Ch9B3 Chaetoceros_brevis_2_Na7C2 Chaetoceros_brevis_1_Na7B1 Chaetoceros_teres_Ch5A1 Chaetoceros_teres_Ch13B2 Chaetoceros_lauderi_Na34C3 Chaetoceros_lauderi_Na13A4 Chaetoceros_lauderi_Na2A1 Chaetoceros_sp._Clade_Na13C2_Na13C2 Chaetoceros_circinalis_Na15C2 Chaetoceros_sp._Clade_Na17B2_Na17B2 Chaetoceros_sp._Clade_Na12A3_Na9A3 Chaetoceros_diversus_1_Na23B1 Chaetoceros_diversus_1_Na50B2 Chaetoceros_diversus_1_Na5B2 Chaetoceros_diversus_1_Na3C1 Chaetoceros_affinis_Na49A2 Chaetoceros_throndsenii_Na45B3 Chaetoceros_elegans_Ch12A1 Chaetoceros_lorenzianus_2_Ch11A1 Chaetoceros_lorenzianus_2_Ch4A3 Chaetoceros_lorenzianus_2_Ch4C4 Chaetoceros_lorenzianus_2_Ch13B4 Chaetoceros_cf._decipiens_El6B1 Chaetoceros_decipiens_Na28A2 Chaetoceros_lorenzianus_1_Ch11C1 Chaetoceros_lorenzianus_1_Ch4C3 Chaetoceros_sp._Clade_Va7D2_Na44B3 Chaetoceros_sp._Clade_Va7D2_Na43A4 Chaetoceros_sp._Clade_Na28A1_Na28A1 Chaetoceros_anastomosans_Na14C2 Chaetoceros_anastomosans_Na14C3 Chaetoceros_cf._vixvisibilis_Na25C3 Chaetoceros_cf._vixvisibilis_Na28A4 Chaetoceros_sp._Clade_Na26B1_Na26B1 Chaetoceros_sp._Clade_Na11C3_Na11C3 Chaetoceros_sp._Clade_Na11C3_Na43A1 Chaetoceros_constrictus_Ch12C1 Chaetoceros_rotosporus_Na22B1 Chaetoceros_rotosporus_Na23A1 Chaetoceros_diadema_1_Ch4A1 Chaetoceros_diadema_1_Na13B1 Chaetoceros_diadema_2_Ch5C1 Hydrosera_sp._CYTX025 Terpsinoe_musica_NHOP43 Detonula_confervacea_CCMP353 Thalassiosira_pseudonana_CCMP1335 ; END; BEGIN TREES; Title Imported_trees; ID 016c23ffe7035; LINK Taxa = 'Maximum Likelihood (ML) tree of nuclear 18S and 28S genes'; TRANSLATE [0] 1 Bacteriastrum_hyalinum_Na10B1, [1] 2 Bacteriastrum_mediterraneum_Na1C4, [2] 3 Bacteriastrum_mediterraneum_Na29B3, [3] 4 Bacteriastrum_jadranum_Na19C3, [4] 5 Bacteriastrum_jadranum_Na19C1, [5] 6 Bacteriastrum_furcatum_2_Na8A3, [6] 7 Bacteriastrum_elegans_Na25A3, [7] 8 Bacteriastrum_parallelum_newLA2, [8] 9 Chaetoceros_protuberans_Ch8C2, [9] 10 Chaetoceros_didymus_2_Na20B4, [10] 11 Chaetoceros_didymus_1_Ch6A3, [11] 12 Chaetoceros_eibenii_Ro1B2, [12] 13 Chaetoceros_eibenii_Ch8C3, [13] 14 Chaetoceros_cf._pseudodichaeta_EL1C1, [14] 15 Chaetoceros_danicus_Na9B4, [15] 16 Chaetoceros_cf._convolutus_Ch5C4, [16] 17 Chaetoceros_cf._convolutus_L7B6, [17] 18 Chaetoceros_peruvianus_2_Ch11B4, [18] 19 Chaetoceros_rostratus_Na1C3, [19] 20 Chaetoceros_rostratus_newDA3, [20] 21 Chaetoceros_peruvianus_1_newEA1, [21] 22 Chaetoceros_contortus_Ch12A4, [22] 23 Chaetoceros_contortus_cf._var._contortus_Na31B2, [23] 24 Chaetoceros_tortissimus_Na25A2, [24] 25 Chaetoceros_cf._tortissimus_Na28B3, [25] 26 Chaetoceros_cf._tortissimus_Na18C4, [26] 27 Chaetoceros_curvisetus_1_Ro3B2, [27] 28 Chaetoceros_curvisetus_1_Na10C1, [28] 29 Chaetoceros_curvisetus_3_El4A2, [29] 30 Chaetoceros_curvisetus_3_Na3C4, [30] 31 Chaetoceros_pseudocurvisetus_Na13C4, [31] 32 Chaetoceros_curvisetus_2c_El6A2, [32] 33 Chaetoceros_curvisetus_2a_Na1C1, [33] 34 Chaetoceros_curvisetus_2b_Ch5B1, [34] 35 Chaetoceros_debilis_2_MM24A3, [35] 36 Chaetoceros_debilis_2_MM24C3, [36] 37 Chaetoceros_debilis_3_Ch9A3, [37] 38 Chaetoceros_debilis_3_Ch1A1, [38] 39 Chaetoceros_tenuissimus_Na26A1, [39] 40 Chaetoceros_tenuissimus_Na44A1, [40] 41 Chaetoceros_cinctus_Ch3C4, [41] 42 Chaetoceros_radicans_Ch11A4, [42] 43 Chaetoceros_radicans_Ch10A3, [43] 44 Chaetoceros_dichatoensis_Ch1B3, [44] 45 Chaetoceros_sporotruncatus_Ch9C4, [45] 46 Chaetoceros_sporotruncatus_Ch2A4, [46] 47 Chaetoceros_socialis_Na33B1, [47] 48 Chaetoceros_costatus_Na1A3, [48] 49 Chaetoceros_costatus_Ro1B1, [49] 50 Chaetoceros_costatus_Ro2A2, [50] 51 Chaetoceros_brevis_3_Ch9B3, [51] 52 Chaetoceros_brevis_2_Na7C2, [52] 53 Chaetoceros_brevis_1_Na7B1, [53] 54 Chaetoceros_teres_Ch5A1, [54] 55 Chaetoceros_teres_Ch13B2, [55] 56 Chaetoceros_lauderi_Na34C3, [56] 57 Chaetoceros_lauderi_Na13A4, [57] 58 Chaetoceros_lauderi_Na2A1, [58] 59 Chaetoceros_sp._Clade_Na13C2_Na13C2, [59] 60 Chaetoceros_circinalis_Na15C2, [60] 61 Chaetoceros_sp._Clade_Na17B2_Na17B2, [61] 62 Chaetoceros_sp._Clade_Na12A3_Na9A3, [62] 63 Chaetoceros_diversus_1_Na23B1, [63] 64 Chaetoceros_diversus_1_Na50B2, [64] 65 Chaetoceros_diversus_1_Na5B2, [65] 66 Chaetoceros_diversus_1_Na3C1, [66] 67 Chaetoceros_affinis_Na49A2, [67] 68 Chaetoceros_throndsenii_Na45B3, [68] 69 Chaetoceros_elegans_Ch12A1, [69] 70 Chaetoceros_lorenzianus_2_Ch11A1, [70] 71 Chaetoceros_lorenzianus_2_Ch4A3, [71] 72 Chaetoceros_lorenzianus_2_Ch4C4, [72] 73 Chaetoceros_lorenzianus_2_Ch13B4, [73] 74 Chaetoceros_cf._decipiens_El6B1, [74] 75 Chaetoceros_decipiens_Na28A2, [75] 76 Chaetoceros_lorenzianus_1_Ch11C1, [76] 77 Chaetoceros_lorenzianus_1_Ch4C3, [77] 78 Chaetoceros_sp._Clade_Va7D2_Na44B3, [78] 79 Chaetoceros_sp._Clade_Va7D2_Na43A4, [79] 80 Chaetoceros_sp._Clade_Na28A1_Na28A1, [80] 81 Chaetoceros_anastomosans_Na14C2, [81] 82 Chaetoceros_anastomosans_Na14C3, [82] 83 Chaetoceros_cf._vixvisibilis_Na25C3, [83] 84 Chaetoceros_cf._vixvisibilis_Na28A4, [84] 85 Chaetoceros_sp._Clade_Na26B1_Na26B1, [85] 86 Chaetoceros_sp._Clade_Na11C3_Na11C3, [86] 87 Chaetoceros_sp._Clade_Na11C3_Na43A1, [87] 88 Chaetoceros_constrictus_Ch12C1, [88] 89 Chaetoceros_rotosporus_Na22B1, [89] 90 Chaetoceros_rotosporus_Na23A1, [90] 91 Chaetoceros_diadema_1_Ch4A1, [91] 92 Chaetoceros_diadema_1_Na13B1, [92] 93 Chaetoceros_diadema_2_Ch5C1, [93] 94 Hydrosera_sp._CYTX025, [94] 95 Terpsinoe_musica_NHOP43, [95] 96 Detonula_confervacea_CCMP353, [96] 97 Thalassiosira_pseudonana_CCMP1335; TREE Imported_tree_1 = (((1:0.02201043,(((2:0.000001,3:0.000001):0.01512832[%bootstrapFrequency = 100 ],(((4:0.00050365,5:0.000001):0.00505816[%bootstrapFrequency = 100 ],6:0.00215471):0.01902769[%bootstrapFrequency = 100 ],7:0.02764035):0.01771731[%bootstrapFrequency = 100 ]):0.00666001[%bootstrapFrequency = 87 ],8:0.03800278):0.05292522[%bootstrapFrequency = 100 ]):0.10147976[%bootstrapFrequency = 100 ],(((9:0.06329307,(10:0.00693005,11:0.00765694):0.03547084[%bootstrapFrequency = 100 ]):0.04439542[%bootstrapFrequency = 100 ],((12:0.00044342,13:0.000001):0.01875368[%bootstrapFrequency = 100 ],(14:0.02035592,(((15:0.00836495,16:0.00781385):0.00684257[%bootstrapFrequency = 99 ],17:0.00495117):0.00849457[%bootstrapFrequency = 100 ],(18:0.00271141,((19:0.000001,20:0.00096252):0.00529744[%bootstrapFrequency = 96 ],21:0.00354254):0.00132875[%bootstrapFrequency = 58 ]):0.00802437[%bootstrapFrequency = 96 ]):0.03269909[%bootstrapFrequency = 100 ]):0.01280726[%bootstrapFrequency = 93 ]):0.00471076[%bootstrapFrequency = 73 ]):0.02201494[%bootstrapFrequency = 100 ],((22:0.00112227,23:0.00475148):0.0573616[%bootstrapFrequency = 100 ],(((((24:0.02481905,(25:0.000001,26:0.00045211):0.02699683[%bootstrapFrequency = 100 ]):0.10428324[%bootstrapFrequency = 100 ],((((27:0.000001,28:0.000001):0.03070962[%bootstrapFrequency = 100 ],((29:0.01058219,30:0.03177334):0.00711522[%bootstrapFrequency = 87 ],31:0.01849148):0.00419999[%bootstrapFrequency = 47 ]):0.0072626[%bootstrapFrequency = 45 ],(32:0.01007182,(33:0.000001,34:0.01200067):0.00922304[%bootstrapFrequency = 100 ]):0.03076519[%bootstrapFrequency = 100 ]):0.03041581[%bootstrapFrequency = 100 ],((35:0.000001,36:0.0009176):0.02040371[%bootstrapFrequency = 100 ],(37:0.000001,38:0.000001):0.00690172[%bootstrapFrequency = 100 ]):0.24444346[%bootstrapFrequency = 100 ]):0.01041189[%bootstrapFrequency = 41 ]):0.05416071[%bootstrapFrequency = 100 ],((39:0.00045687,40:0.00045162):0.12329317[%bootstrapFrequency = 100 ],(((41:0.06475278,(42:0.000001,43:0.00044684):0.04030191[%bootstrapFrequency = 100 ]):0.02938591[%bootstrapFrequency = 100 ],((44:0.00342753,(45:0.000001,46:0.000001):0.00421658[%bootstrapFrequency = 100 ]):0.02205115[%bootstrapFrequency = 100 ],47:0.02109229):0.00792057[%bootstrapFrequency = 81 ]):0.03304983[%bootstrapFrequency = 100 ],(48:0.000001,(49:0.0004428,50:0.000001):0.00044255[%bootstrapFrequency = 63 ]):0.04966064[%bootstrapFrequency = 100 ]):0.01185218[%bootstrapFrequency = 78 ]):0.03260881[%bootstrapFrequency = 100 ]):0.01316668[%bootstrapFrequency = 99 ],((51:0.01111346,(52:0.00921113,53:0.01010817):0.00120868[%bootstrapFrequency = 90 ]):0.03427578[%bootstrapFrequency = 100 ],((54:0.0008876,55:0.000001):0.00785856[%bootstrapFrequency = 100 ],(56:0.00044325,(57:0.000001,58:0.00088679):0.000001[%bootstrapFrequency = 50 ]):0.01459397[%bootstrapFrequency = 100 ]):0.03791481[%bootstrapFrequency = 100 ]):0.03091491[%bootstrapFrequency = 100 ]):0.01717641[%bootstrapFrequency = 100 ],((59:0.03048594,((60:0.03527805,(61:0.0200153,62:0.00677797):0.010659[%bootstrapFrequency = 100 ]):0.00859977[%bootstrapFrequency = 97 ],((63:0.000001,(64:0.00107859,(65:0.0004487,66:0.00089916):0.00044793[%bootstrapFrequency = 72 ]):0.00044897[%bootstrapFrequency = 64 ]):0.00944838[%bootstrapFrequency = 100 ],67:0.00736114):0.0105416[%bootstrapFrequency = 100 ]):0.01909916[%bootstrapFrequency = 100 ]):0.02420762[%bootstrapFrequency = 100 ],(((68:0.04510924,((69:0.01989175,((70:0.00048272,((71:0.000001,72:0.000001):0.000001[%bootstrapFrequency = 80 ],73:0.000001):0.00048485[%bootstrapFrequency = 85 ]):0.00727373[%bootstrapFrequency = 99 ],(74:0.00255921,75:0.00283788):0.00451719[%bootstrapFrequency = 96 ]):0.00606939[%bootstrapFrequency = 100 ]):0.00654308[%bootstrapFrequency = 97 ],(76:0.000001,77:0.000001):0.01545205[%bootstrapFrequency = 100 ]):0.01722835[%bootstrapFrequency = 100 ]):0.00901687[%bootstrapFrequency = 94 ],((78:0.00087233,79:0.000001):0.01982491[%bootstrapFrequency = 100 ],(80:0.01409732,((81:0.000001,82:0.00049109):0.00654274[%bootstrapFrequency = 100 ],((83:0.00049276,84:0.000001):0.00885275[%bootstrapFrequency = 100 ],(85:0.00392697,(86:0.000001,87:0.000001):0.00053252[%bootstrapFrequency = 72 ]):0.01109492[%bootstrapFrequency = 100 ]):0.00391717[%bootstrapFrequency = 81 ]):0.01014815[%bootstrapFrequency = 100 ]):0.01043032[%bootstrapFrequency = 95 ]):0.04707646[%bootstrapFrequency = 100 ]):0.01014368[%bootstrapFrequency = 93 ],(88:0.03667805,((89:0.000001,90:0.000001):0.01311604[%bootstrapFrequency = 100 ],((91:0.0013367,92:0.000001):0.00332229[%bootstrapFrequency = 96 ],93:0.00117476):0.00868192[%bootstrapFrequency = 100 ]):0.02061969[%bootstrapFrequency = 100 ]):0.00649121[%bootstrapFrequency = 61 ]):0.00272991[%bootstrapFrequency = 29 ]):0.04421756[%bootstrapFrequency = 100 ]):0.00399579[%bootstrapFrequency = 45 ]):0.00657423[%bootstrapFrequency = 67 ]):0.01204459[%bootstrapFrequency = 74 ]):0.01859029[%bootstrapFrequency = 99 ],((94:0.12321262,95:0.11376556):0.02536582[%bootstrapFrequency = 89 ],(96:0.02245691,97:0.03835552):0.07313299[%bootstrapFrequency = 100 ]):0.01859029[%bootstrapFrequency = 99 ]); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1563972116608; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3490259039031967593; endTell; getWindow; tell It; suppress; setResourcesState false false 198; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 944; setLocation -9 -9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #3490259039031967593 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #3490259039031967593; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1722 872; setLocation -9 -9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #3490259039031967593 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 016c23ffe7035; toggleUseWeights off; endTell; setAssignedID 1306.1563972095199.1014559255583731009; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1722 872; setLocation -9 -9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow bootstrapFrequency; toggleShow posteriorProbability; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;