#NEXUS [written Wed Jul 24 14:43:07 CEST 2019 by Mesquite version 3.40 (build 877) at ANTON/192.168.56.1] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=94; TAXLABELS Chaetoceros_contortus_Ch12A4 Chaetoceros_contortus_cf._var._contortus_Na31B2 Chaetoceros_cinctus_Ch3C4 Chaetoceros_dichatoensis_Ch1B3 Chaetoceros_sporotruncatus_Ch2A4 Chaetoceros_sporotruncatus_Ch9C4 Chaetoceros_radicans_Ch11A4 Chaetoceros_radicans_Ch10A3 Chaetoceros_socialis_Na33B1 Chaetoceros_costatus_Na1A3 Chaetoceros_costatus_Ro1B1 Chaetoceros_costatus_Ro2A2 Chaetoceros_throndsenii_Na45B3 Chaetoceros_rotosporus_Na22B1 Chaetoceros_rotosporus_Na23A1 Chaetoceros_sp._Clade_Na13C2_Na13C2 Chaetoceros_affinis_Na49A2 Chaetoceros_diversus_1_Na5B2 Chaetoceros_diversus_1_Na3C1 Chaetoceros_diversus_1_Na50B2 Chaetoceros_diversus_1_Na23B1 Chaetoceros_sp._Clade_Va7D2_Na43A4 Chaetoceros_sp._Clade_Na28A1_Na28A1 Chaetoceros_sp._Clade_Va7D2_Na44B3 Chaetoceros_sp._Clade_Na26B1_Na26B1 Chaetoceros_sp._Clade_Na11C3_Na11C3 Chaetoceros_sp._Clade_Na11C3_Na43A1 Chaetoceros_cf._vixvisibilis_Na25C3 Chaetoceros_anastomosans_Na14C2 Chaetoceros_anastomosans_Na14C3 Chaetoceros_circinalis_Na15C2 Chaetoceros_sp._Clade_Na17B2_Na17B2 Chaetoceros_sp._Clade_Na12A3_Na9A3 Chaetoceros_lorenzianus_1_Ch11C1 Chaetoceros_lorenzianus_1_Ch4C3 Chaetoceros_cf._lorenzianus_El1A4 Chaetoceros_elegans_Ch12A1 Chaetoceros_cf._decipiens_El6B1 Chaetoceros_decipiens_Na28A2 Chaetoceros_lorenzianus_2_Ch4C4 Chaetoceros_lorenzianus_2_Ch4A3 Chaetoceros_lorenzianus_2_Ch11A1 Chaetoceros_lorenzianus_2_Ch13B4 Chaetoceros_constrictus_Ch12C1 Chaetoceros_diadema_1_Ch4A1 Chaetoceros_diadema_1_Na13B1 Chaetoceros_diadema_2_Ch5C1 Chaetoceros_eibenii_Ch8C3 Chaetoceros_eibenii_Ro1B2 Chaetoceros_didymus_2_Na20B4 Chaetoceros_didymus_1_Ch6A3 Chaetoceros_protuberans_Ch8C2 Chaetoceros_cf._convolutus_L7B6 Chaetoceros_cf._convolutus_Ch5C4 Chaetoceros_peruvianus_2_Ch11B4 Chaetoceros_rostratus_Na1C3 Chaetoceros_rostratus_newDA3 Chaetoceros_peruvianus_1_newEA1 Chaetoceros_cf._pseudodichaeta_EL1C1 Bacteriastrum_mediterraneum_Na29B3 Bacteriastrum_jadranum_Na19C1 Bacteriastrum_elegans_Na25A3 Bacteriastrum_furcatum_2_Na8A3 Bacteriastrum_jadranum_Na19C3 Chaetoceros_tenuissimus_Na44A1 Chaetoceros_tenuissimus_Na36B4 Chaetoceros_tenuissimus_Na26A1 Chaetoceros_curvisetus_2b_Ch5B1 Chaetoceros_curvisetus_3_El4A2 Chaetoceros_curvisetus_3_Na3C4 Chaetoceros_cf._tortissimus_Na28B3 Chaetoceros_tortissimus_Na25A2 Chaetoceros_cf._tortissimus_Na18C4 Chaetoceros_curvisetus_2c_El6A2 Chaetoceros_curvisetus_2a_Na1C1 Chaetoceros_pseudocurvisetus_Na13C4 Chaetoceros_curvisetus_1_Na10C1 Chaetoceros_curvisetus_1_Ro3B2 Chaetoceros_debilis_2_MM24A3 Chaetoceros_debilis_3_Ch9A3 Chaetoceros_debilis_3_Ch1A1 Chaetoceros_debilis_2_MM24C3 Chaetoceros_teres_Ch13B2 Chaetoceros_teres_Ch5A1 Chaetoceros_lauderi_Na2A1 Chaetoceros_lauderi_Na36A1 Chaetoceros_lauderi_Na34C3 Chaetoceros_lauderi_Na13A4 Chaetoceros_brevis_2_Na7C2 Chaetoceros_brevis_1_Na7B1 Terpsinoe_musica_NHOP43 Hydrosera_sp._CYTX025 Detonula_confervacea_CCMP353 Thalassiosira_pseudonana_CCMP1335 ; END; BEGIN TREES; Title 'Maximum Likelihood (ML) tree of plastid rbcL and psbA genes'; ID 016c2400fd377; LINK Taxa = Taxa; TRANSLATE [0] 1 Chaetoceros_contortus_Ch12A4, [1] 2 Chaetoceros_contortus_cf._var._contortus_Na31B2, [2] 3 Chaetoceros_cinctus_Ch3C4, [3] 4 Chaetoceros_dichatoensis_Ch1B3, [4] 5 Chaetoceros_sporotruncatus_Ch2A4, [5] 6 Chaetoceros_sporotruncatus_Ch9C4, [6] 7 Chaetoceros_radicans_Ch11A4, [7] 8 Chaetoceros_radicans_Ch10A3, [8] 9 Chaetoceros_socialis_Na33B1, [9] 10 Chaetoceros_costatus_Na1A3, [10] 11 Chaetoceros_costatus_Ro1B1, [11] 12 Chaetoceros_costatus_Ro2A2, [12] 13 Chaetoceros_throndsenii_Na45B3, [13] 14 Chaetoceros_rotosporus_Na22B1, [14] 15 Chaetoceros_rotosporus_Na23A1, [15] 16 Chaetoceros_sp._Clade_Na13C2_Na13C2, [16] 17 Chaetoceros_affinis_Na49A2, [17] 18 Chaetoceros_diversus_1_Na5B2, [18] 19 Chaetoceros_diversus_1_Na3C1, [19] 20 Chaetoceros_diversus_1_Na50B2, [20] 21 Chaetoceros_diversus_1_Na23B1, [21] 22 Chaetoceros_sp._Clade_Va7D2_Na43A4, [22] 23 Chaetoceros_sp._Clade_Na28A1_Na28A1, [23] 24 Chaetoceros_sp._Clade_Va7D2_Na44B3, [24] 25 Chaetoceros_sp._Clade_Na26B1_Na26B1, [25] 26 Chaetoceros_sp._Clade_Na11C3_Na11C3, [26] 27 Chaetoceros_sp._Clade_Na11C3_Na43A1, [27] 28 Chaetoceros_cf._vixvisibilis_Na25C3, [28] 29 Chaetoceros_anastomosans_Na14C2, [29] 30 Chaetoceros_anastomosans_Na14C3, [30] 31 Chaetoceros_circinalis_Na15C2, [31] 32 Chaetoceros_sp._Clade_Na17B2_Na17B2, [32] 33 Chaetoceros_sp._Clade_Na12A3_Na9A3, [33] 34 Chaetoceros_lorenzianus_1_Ch11C1, [34] 35 Chaetoceros_lorenzianus_1_Ch4C3, [35] 36 Chaetoceros_cf._lorenzianus_El1A4, [36] 37 Chaetoceros_elegans_Ch12A1, [37] 38 Chaetoceros_cf._decipiens_El6B1, [38] 39 Chaetoceros_decipiens_Na28A2, [39] 40 Chaetoceros_lorenzianus_2_Ch4C4, [40] 41 Chaetoceros_lorenzianus_2_Ch4A3, [41] 42 Chaetoceros_lorenzianus_2_Ch11A1, [42] 43 Chaetoceros_lorenzianus_2_Ch13B4, [43] 44 Chaetoceros_constrictus_Ch12C1, [44] 45 Chaetoceros_diadema_1_Ch4A1, [45] 46 Chaetoceros_diadema_1_Na13B1, [46] 47 Chaetoceros_diadema_2_Ch5C1, [47] 48 Chaetoceros_eibenii_Ch8C3, [48] 49 Chaetoceros_eibenii_Ro1B2, [49] 50 Chaetoceros_didymus_2_Na20B4, [50] 51 Chaetoceros_didymus_1_Ch6A3, [51] 52 Chaetoceros_protuberans_Ch8C2, [52] 53 Chaetoceros_cf._convolutus_L7B6, [53] 54 Chaetoceros_cf._convolutus_Ch5C4, [54] 55 Chaetoceros_peruvianus_2_Ch11B4, [55] 56 Chaetoceros_rostratus_Na1C3, [56] 57 Chaetoceros_rostratus_newDA3, [57] 58 Chaetoceros_peruvianus_1_newEA1, [58] 59 Chaetoceros_cf._pseudodichaeta_EL1C1, [59] 60 Bacteriastrum_mediterraneum_Na29B3, [60] 61 Bacteriastrum_jadranum_Na19C1, [61] 62 Bacteriastrum_elegans_Na25A3, [62] 63 Bacteriastrum_furcatum_2_Na8A3, [63] 64 Bacteriastrum_jadranum_Na19C3, [64] 65 Chaetoceros_tenuissimus_Na44A1, [65] 66 Chaetoceros_tenuissimus_Na36B4, [66] 67 Chaetoceros_tenuissimus_Na26A1, [67] 68 Chaetoceros_curvisetus_2b_Ch5B1, [68] 69 Chaetoceros_curvisetus_3_El4A2, [69] 70 Chaetoceros_curvisetus_3_Na3C4, [70] 71 Chaetoceros_cf._tortissimus_Na28B3, [71] 72 Chaetoceros_tortissimus_Na25A2, [72] 73 Chaetoceros_cf._tortissimus_Na18C4, [73] 74 Chaetoceros_curvisetus_2c_El6A2, [74] 75 Chaetoceros_curvisetus_2a_Na1C1, [75] 76 Chaetoceros_pseudocurvisetus_Na13C4, [76] 77 Chaetoceros_curvisetus_1_Na10C1, [77] 78 Chaetoceros_curvisetus_1_Ro3B2, [78] 79 Chaetoceros_debilis_2_MM24A3, [79] 80 Chaetoceros_debilis_3_Ch9A3, [80] 81 Chaetoceros_debilis_3_Ch1A1, [81] 82 Chaetoceros_debilis_2_MM24C3, [82] 83 Chaetoceros_teres_Ch13B2, [83] 84 Chaetoceros_teres_Ch5A1, [84] 85 Chaetoceros_lauderi_Na2A1, [85] 86 Chaetoceros_lauderi_Na36A1, [86] 87 Chaetoceros_lauderi_Na34C3, [87] 88 Chaetoceros_lauderi_Na13A4, [88] 89 Chaetoceros_brevis_2_Na7C2, [89] 90 Chaetoceros_brevis_1_Na7B1, [90] 91 Terpsinoe_musica_NHOP43, [91] 92 Hydrosera_sp._CYTX025, [92] 93 Detonula_confervacea_CCMP353, [93] 94 Thalassiosira_pseudonana_CCMP1335; TREE Imported_tree_1 = (((1:0.00877816,2:0.01956118):0.04245465[%bootstrapFrequency = 100 ],((((3:0.00417957,((4:0.00341783,(5:0.000001,6:0.000001):0.00186465[%bootstrapFrequency = 100 ]):0.01846588[%bootstrapFrequency = 100 ],(7:0.000001,8:0.000001):0.01244071[%bootstrapFrequency = 100 ]):0.00368337[%bootstrapFrequency = 45 ]):0.00114089[%bootstrapFrequency = 28 ],9:0.01115164):0.0054325[%bootstrapFrequency = 32 ],(10:0.00207469,(11:0.000001,12:0.000001):0.00241223[%bootstrapFrequency = 100 ]):0.01049635[%bootstrapFrequency = 98 ]):0.00635057[%bootstrapFrequency = 57 ],(((13:0.03479244,((((14:0.000001,15:0.000001):0.01111409[%bootstrapFrequency = 100 ],(((16:0.01403786,((17:0.000001,(18:0.000001,(19:0.000001,(20:0.000001,21:0.000001):0.000001[%bootstrapFrequency = 24 ]):0.000001[%bootstrapFrequency = 13 ]):0.000001[%bootstrapFrequency = 99 ]):0.00942996[%bootstrapFrequency = 99 ],((22:0.00940091,(23:0.00193027,24:0.00182397):0.000001[%bootstrapFrequency = 82 ]):0.00886501[%bootstrapFrequency = 99 ],(((25:0.00700309,(26:0.00772889,27:0.0015399):0.00171511[%bootstrapFrequency = 69 ]):0.00736947[%bootstrapFrequency = 94 ],28:0.009463):0.00949185[%bootstrapFrequency = 94 ],(29:0.00149181,30:0.000001):0.01002574[%bootstrapFrequency = 100 ]):0.00343494[%bootstrapFrequency = 59 ]):0.01349018[%bootstrapFrequency = 97 ]):0.00122763[%bootstrapFrequency = 16 ]):0.00248697[%bootstrapFrequency = 23 ],31:0.00881996):0.00163408[%bootstrapFrequency = 3 ],32:0.00822975):0.00639225[%bootstrapFrequency = 12 ]):0.00414798[%bootstrapFrequency = 9 ],33:0.01825145):0.00337892[%bootstrapFrequency = 21 ],(((34:0.000001,35:0.000001):0.01560528[%bootstrapFrequency = 100 ],(36:0.02081486,(37:0.00464276,((38:0.00092075,39:0.00056363):0.00100916[%bootstrapFrequency = 72 ],(40:0.000001,(41:0.000001,(42:0.000001,43:0.000001):0.000001[%bootstrapFrequency = 35 ]):0.000001[%bootstrapFrequency = 98 ]):0.00948813[%bootstrapFrequency = 100 ]):0.0014719[%bootstrapFrequency = 63 ]):0.00853985[%bootstrapFrequency = 99 ]):0.00318018[%bootstrapFrequency = 39 ]):0.00536929[%bootstrapFrequency = 37 ],(44:0.01839309,(45:0.000001,(46:0.00209546,47:0.000001):0.00323863[%bootstrapFrequency = 65 ]):0.00719525[%bootstrapFrequency = 77 ]):0.00676748[%bootstrapFrequency = 58 ]):0.00253481[%bootstrapFrequency = 38 ]):0.00769063[%bootstrapFrequency = 49 ]):0.0130051[%bootstrapFrequency = 99 ],(((48:0.00198822,49:0.00044754):0.0517382[%bootstrapFrequency = 100 ],(50:0.000001,(51:0.00165562,52:0.0304758):0.00153277[%bootstrapFrequency = 29 ]):0.00039453[%bootstrapFrequency = 30 ]):0.0073981[%bootstrapFrequency = 46 ],((((53:0.03938376,54:0.04082347):0.01005707[%bootstrapFrequency = 73 ],(55:0.0180181,((56:0.00065319,57:0.000001):0.02435834[%bootstrapFrequency = 100 ],58:0.01775498):0.00360085[%bootstrapFrequency = 45 ]):0.03919184[%bootstrapFrequency = 100 ]):0.01434815[%bootstrapFrequency = 73 ],59:0.11969204):0.03146605[%bootstrapFrequency = 85 ],(60:0.02169493,(61:0.00657217,(62:0.02681466,(63:0.00310022,64:0.00352237):0.00134349[%bootstrapFrequency = 64 ]):0.00404701[%bootstrapFrequency = 41 ]):0.01511134[%bootstrapFrequency = 89 ]):0.03065502[%bootstrapFrequency = 100 ]):0.00327334[%bootstrapFrequency = 7 ]):0.00556951[%bootstrapFrequency = 13 ]):0.00947399[%bootstrapFrequency = 12 ],((65:0.00095352,(66:0.00047216,67:0.00046905):0.00044711[%bootstrapFrequency = 73 ]):0.0149167[%bootstrapFrequency = 100 ],(((((68:0.000001,(69:0.01595348,70:0.0089716):0.00518142[%bootstrapFrequency = 92 ]):0.00264009[%bootstrapFrequency = 49 ],((71:0.02692394,72:0.02317628):0.00657279[%bootstrapFrequency = 38 ],((73:0.00412267,74:0.00503176):0.00261107[%bootstrapFrequency = 60 ],75:0.00320155):0.0092894[%bootstrapFrequency = 52 ]):0.00068495[%bootstrapFrequency = 12 ]):0.00112362[%bootstrapFrequency = 14 ],(76:0.00958463,(77:0.000001,78:0.000001):0.01189869[%bootstrapFrequency = 100 ]):0.00192018[%bootstrapFrequency = 34 ]):0.00694316[%bootstrapFrequency = 51 ],(((79:0.01711174,80:0.00023629):0.00023323[%bootstrapFrequency = 53 ],81:0.000001):0.00026546[%bootstrapFrequency = 82 ],82:0.00437312):0.01891826[%bootstrapFrequency = 99 ]):0.00395178[%bootstrapFrequency = 36 ],((83:0.000001,84:0.000001):0.01913361[%bootstrapFrequency = 100 ],(((85:0.000001,(86:0.000001,87:0.000001):0.000001[%bootstrapFrequency = 98 ]):0.000001[%bootstrapFrequency = 43 ],88:0.000001):0.01685522[%bootstrapFrequency = 100 ],(89:0.00246297,90:0.01586094):0.00747552[%bootstrapFrequency = 83 ]):0.00462844[%bootstrapFrequency = 52 ]):0.00819076[%bootstrapFrequency = 76 ]):0.00709691[%bootstrapFrequency = 43 ]):0.00267405[%bootstrapFrequency = 15 ]):0.00435756[%bootstrapFrequency = 3 ]):0.00536892[%bootstrapFrequency = 4 ]):0.02994291[%bootstrapFrequency = 68 ],((91:0.09798246,92:0.18690943):0.0571768[%bootstrapFrequency = 94 ],(93:0.03368575,94:0.0145202):0.04291753[%bootstrapFrequency = 100 ]):0.02994291[%bootstrapFrequency = 68 ]); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1563972187282; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4406668738998391249; endTell; getWindow; tell It; suppress; setResourcesState false false 198; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 944; setLocation -9 -9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #4406668738998391249 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #4406668738998391249; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1722 872; setLocation -9 -9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4406668738998391249 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 016c2400fd377; toggleUseWeights off; endTell; setAssignedID 1445.1563972165075.7006765598568860715; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1722 872; setLocation -9 -9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow bootstrapFrequency; toggleShow posteriorProbability; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;