#NEXUS [written Wed Jul 24 14:40:49 CEST 2019 by Mesquite version 3.40 (build 877) at ANTON/192.168.56.1] BEGIN TAXA; TITLE 'Maximum Likelihood (ML) tree of mitochondrial COI gene'; DIMENSIONS NTAX=52; TAXLABELS Chaetoceros_eibenii_Ch8C3 Chaetoceros_contortus_Ch12A4 Chaetoceros_cf._convolutus_Ch5C4 Chaetoceros_danicus_Na9B4 Chaetoceros_lauderi_Na2A1 Chaetoceros_lauderi_Na13A4 Chaetoceros_brevis_1_Na7B1 Chaetoceros_radicans_Ch11A4 Chaetoceros_radicans_Ch10A3 Chaetoceros_cf._tortissimus_Na28B3 Chaetoceros_tenuissimus_Na44A1 Chaetoceros_cinctus_Ch3C4 Chaetoceros_socialis_Na33B1 Chaetoceros_dichatoensis_Ch1B3 Chaetoceros_tortissimus_Na25A2 Chaetoceros_pseudocurvisetus_Na13C4 Chaetoceros_curvisetus_1_Na10C1 Chaetoceros_curvisetus_3_Na3C4 Chaetoceros_curvisetus_2b_Ch5B1 Chaetoceros_costatus_Ro1B1 Chaetoceros_curvisetus_2c_El6A2 Chaetoceros_curvisetus_3_El4A2 Chaetoceros_debilis_3_Ch9A3 Chaetoceros_debilis_3_Ch1A1 Chaetoceros_debilis_2_MM24C3 Chaetoceros_diadema_1_Ch4A1 Chaetoceros_diadema_2_Ch5C1 Chaetoceros_diadema_1_Na13B1 Chaetoceros_diversus_1_Na5B2 Chaetoceros_rotosporus_Na23A1 Chaetoceros_rotosporus_Na22B1 Chaetoceros_sp._Clade_Va7D2_Na44B3 Chaetoceros_sp._Clade_Na28A1_Na28A1 Chaetoceros_cf._vixvisibilis_Na28A4 Chaetoceros_cf._vixvisibilis_Na25C3 Chaetoceros_throndsenii_Na45B3 Chaetoceros_anastomosans_Na14C3 Chaetoceros_anastomosans_Na14C2 Chaetoceros_sp._Clade_Na11C3_Na43A1 Chaetoceros_sp._Clade_Na26B1_Na26B1 Chaetoceros_lorenzianus_1_Ch11C1 Chaetoceros_decipiens_Na28A2 Chaetoceros_cf._decipiens_El6B1 Chaetoceros_lorenzianus_2_Ch4A3 Chaetoceros_lorenzianus_2_Ch4C4 Chaetoceros_lorenzianus_1_Ch4C3 Chaetoceros_cf._lorenzianus_El1A4 Chaetoceros_protuberans_Ch8C2 Bacteriastrum_hyalinum_Na10B1 Bacteriastrum_parallelum_newLA2 Bacteriastrum_mediterraneum_Na29B3 Bacteriastrum_mediterraneum_Na1C4 ; END; BEGIN TREES; Title Imported_trees; ID 016c23fea67e3; LINK Taxa = 'Maximum Likelihood (ML) tree of mitochondrial COI gene'; TRANSLATE [0] 1 Chaetoceros_eibenii_Ch8C3, [1] 2 Chaetoceros_contortus_Ch12A4, [2] 3 Chaetoceros_cf._convolutus_Ch5C4, [3] 4 Chaetoceros_danicus_Na9B4, [4] 5 Chaetoceros_lauderi_Na2A1, [5] 6 Chaetoceros_lauderi_Na13A4, [6] 7 Chaetoceros_brevis_1_Na7B1, [7] 8 Chaetoceros_radicans_Ch11A4, [8] 9 Chaetoceros_radicans_Ch10A3, [9] 10 Chaetoceros_cf._tortissimus_Na28B3, [10] 11 Chaetoceros_tenuissimus_Na44A1, [11] 12 Chaetoceros_cinctus_Ch3C4, [12] 13 Chaetoceros_socialis_Na33B1, [13] 14 Chaetoceros_dichatoensis_Ch1B3, [14] 15 Chaetoceros_tortissimus_Na25A2, [15] 16 Chaetoceros_pseudocurvisetus_Na13C4, [16] 17 Chaetoceros_curvisetus_1_Na10C1, [17] 18 Chaetoceros_curvisetus_3_Na3C4, [18] 19 Chaetoceros_curvisetus_2b_Ch5B1, [19] 20 Chaetoceros_costatus_Ro1B1, [20] 21 Chaetoceros_curvisetus_2c_El6A2, [21] 22 Chaetoceros_curvisetus_3_El4A2, [22] 23 Chaetoceros_debilis_3_Ch9A3, [23] 24 Chaetoceros_debilis_3_Ch1A1, [24] 25 Chaetoceros_debilis_2_MM24C3, [25] 26 Chaetoceros_diadema_1_Ch4A1, [26] 27 Chaetoceros_diadema_2_Ch5C1, [27] 28 Chaetoceros_diadema_1_Na13B1, [28] 29 Chaetoceros_diversus_1_Na5B2, [29] 30 Chaetoceros_rotosporus_Na23A1, [30] 31 Chaetoceros_rotosporus_Na22B1, [31] 32 Chaetoceros_sp._Clade_Va7D2_Na44B3, [32] 33 Chaetoceros_sp._Clade_Na28A1_Na28A1, [33] 34 Chaetoceros_cf._vixvisibilis_Na28A4, [34] 35 Chaetoceros_cf._vixvisibilis_Na25C3, [35] 36 Chaetoceros_throndsenii_Na45B3, [36] 37 Chaetoceros_anastomosans_Na14C3, [37] 38 Chaetoceros_anastomosans_Na14C2, [38] 39 Chaetoceros_sp._Clade_Na11C3_Na43A1, [39] 40 Chaetoceros_sp._Clade_Na26B1_Na26B1, [40] 41 Chaetoceros_lorenzianus_1_Ch11C1, [41] 42 Chaetoceros_decipiens_Na28A2, [42] 43 Chaetoceros_cf._decipiens_El6B1, [43] 44 Chaetoceros_lorenzianus_2_Ch4A3, [44] 45 Chaetoceros_lorenzianus_2_Ch4C4, [45] 46 Chaetoceros_lorenzianus_1_Ch4C3, [46] 47 Chaetoceros_cf._lorenzianus_El1A4, [47] 48 Chaetoceros_protuberans_Ch8C2, [48] 49 Bacteriastrum_hyalinum_Na10B1, [49] 50 Bacteriastrum_parallelum_newLA2, [50] 51 Bacteriastrum_mediterraneum_Na29B3, [51] 52 Bacteriastrum_mediterraneum_Na1C4; TREE Imported_tree_1 = ((((1:0.30975783,2:0.92384272):0.13693862[%bootstrapFrequency = 45 ],(3:0.27336263,4:0.45104426):1.0232035[%bootstrapFrequency = 100 ]):0.17626938[%bootstrapFrequency = 38 ],(((((5:0.000001,6:0.000001):0.67795656[%bootstrapFrequency = 100 ],7:0.63164342):0.000001[%bootstrapFrequency = 4 ],((8:0.000001,9:0.000001):0.31972231[%bootstrapFrequency = 100 ],(((10:0.57198093,11:0.14909039):0.28739944[%bootstrapFrequency = 34 ],(12:0.31355503,(13:0.21605687,14:0.11817364):0.09134273[%bootstrapFrequency = 46 ]):0.08192868[%bootstrapFrequency = 35 ]):0.06100009[%bootstrapFrequency = 8 ],(15:0.40571524,((16:0.65911454,(17:0.19154952,(18:0.30818798,(((19:0.10973361,20:0.07718081):0.06492016[%bootstrapFrequency = 79 ],21:0.13844501):0.34856971[%bootstrapFrequency = 86 ],22:0.36820598):0.0201455[%bootstrapFrequency = 36 ]):0.15210978[%bootstrapFrequency = 43 ]):0.07214932[%bootstrapFrequency = 49 ]):0.4905029[%bootstrapFrequency = 62 ],((23:0.000001,24:0.000001):0.14296593[%bootstrapFrequency = 99 ],25:0.05985746):0.29181247[%bootstrapFrequency = 77 ]):0.02689849[%bootstrapFrequency = 11 ]):0.19633262[%bootstrapFrequency = 17 ]):0.01495411[%bootstrapFrequency = 1 ]):0.12017192[%bootstrapFrequency = 3 ]):0.05020575[%bootstrapFrequency = 15 ],((26:0.08184092,(27:0.2537513,28:0.13132569):0.0463896[%bootstrapFrequency = 49 ]):0.43495726[%bootstrapFrequency = 94 ],(29:0.6715968,((30:0.000001,31:0.00523646):0.48613647[%bootstrapFrequency = 99 ],((32:0.49642073,((33:0.43338233,((34:0.000001,35:0.000001):0.32644415[%bootstrapFrequency = 100 ],(36:0.6294723,(37:0.000001,38:0.000001):0.38568534[%bootstrapFrequency = 100 ]):0.16600405[%bootstrapFrequency = 26 ]):0.06569728[%bootstrapFrequency = 9 ]):0.07228107[%bootstrapFrequency = 14 ],(39:0.06604807,40:0.15840888):0.13250962[%bootstrapFrequency = 51 ]):0.06221389[%bootstrapFrequency = 5 ]):0.16619332[%bootstrapFrequency = 4 ],((41:0.4274854,((42:0.02510205,43:0.1228564):0.33438254[%bootstrapFrequency = 92 ],(44:0.0109691,45:0.000001):0.10219317[%bootstrapFrequency = 79 ]):0.10587342[%bootstrapFrequency = 57 ]):0.03934351[%bootstrapFrequency = 52 ],(46:0.000001,47:0.000001):0.61177274[%bootstrapFrequency = 100 ]):0.14337608[%bootstrapFrequency = 41 ]):0.1171789[%bootstrapFrequency = 15 ]):0.0141156[%bootstrapFrequency = 11 ]):0.05272248[%bootstrapFrequency = 31 ]):0.10142034[%bootstrapFrequency = 35 ]):0.05454592[%bootstrapFrequency = 11 ],48:0.58651152):0.10937118[%bootstrapFrequency = 29 ]):0.46392622[%bootstrapFrequency = 91 ],(49:0.30848417,(50:0.43279973,(51:0.000001,52:0.000001):0.50336151[%bootstrapFrequency = 100 ]):0.50696899[%bootstrapFrequency = 95 ]):0.46392622[%bootstrapFrequency = 91 ]); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1563972049912; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4179461065531135288; endTell; getWindow; tell It; suppress; setResourcesState false false 198; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 944; setLocation -9 -9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #4179461065531135288 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #4179461065531135288; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1722 872; setLocation -9 -9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4179461065531135288 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 016c23fea67e3; toggleUseWeights off; endTell; setAssignedID 1167.1563972008485.8629960030366589078; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1722 872; setLocation -9 -9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.scissors; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '((((1:0.30975783,2:0.92384272):0.13693862,(3:0.27336263,4:0.45104426):1.0232035):0.17626938,(((((5:0.000001,6:0.000001):0.67795656,7:0.63164342):0.000001,((8:0.000001,9:0.000001):0.31972231,((11:0.43648982999999997,(12:0.31355503,(13:0.21605687,14:0.11817364):0.09134273):0.08192868):0.06100009,(15:0.40571524,((16:0.65911454,(17:0.19154952,(18:0.30818798,(((19:0.10973361,20:0.07718081):0.06492016,21:0.13844501):0.34856971,22:0.36820598):0.0201455):0.15210978):0.07214932):0.4905029,((23:0.000001,24:0.000001):0.14296593,25:0.05985746):0.29181247):0.02689849):0.19633262):0.01495411):0.12017192):0.05020575,((26:0.08184092,(27:0.2537513,28:0.13132569):0.0463896):0.43495726,(29:0.6715968,((30:0.000001,31:0.00523646):0.48613647,((32:0.49642073,((33:0.43338233,((34:0.000001,35:0.000001):0.32644415,(36:0.6294723,(37:0.000001,38:0.000001):0.38568534):0.16600405):0.06569728):0.07228107,(39:0.06604807,40:0.15840888):0.13250962):0.06221389):0.16619332,((41:0.4274854,((42:0.02510205,43:0.1228564):0.33438254,(44:0.0109691,45:0.000001):0.10219317):0.10587342):0.03934351,(46:0.000001,47:0.000001):0.61177274):0.14337608):0.1171789):0.0141156):0.05272248):0.10142034):0.05454592,48:0.58651152):0.10937118):0.46392622,(49:0.30848417,(50:0.43279973,(51:0.000001,52:0.000001):0.50336151):0.50696899):0.46392622);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow bootstrapFrequency; toggleShow posteriorProbability; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;