#NEXUS [written Tue Aug 31 13:17:08 CEST 2021 by Mesquite version 3.70 (build 940) at 201715inchMBP/192.168.2.86] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=35; TAXLABELS Saccharata_proteae_EU552145.1 Ophiocordyceps_sobolifera_AB968422.1 Ophiocordyceps_sobolifera_EF468828.1 Ophiocordyceps_longissima_EF468817.1 Ophiocordyceps_longissima_AB968420.1 Ophiocordyceps_myrmecophila_MH028159.1 Ophiocordyceps_tricentri_AB968423.1 Ophiocordyceps_irangiensis_AF327389.1 Ophiocordyceps_sphecocephala_JN941445.1 Ophiocordyceps_sphecocephala_AF327390.1 Trichoderma_koningii_AF399239.1 Trichoderma_strigosum_MH398565.1 Trichoderma_aestuarinum_MN535286 Trichoderma_viride_AY489726.1 Trichoderma_viridescens_HM535608.1 Trichoderma_reesei_MF780714.1 Trichoderma_hamatum_HM466686.1 Trichoderma_asperellum_MF780711.1 Trichoderma_asperellum_MG675227.1 Cordyceps_rosea_MF416536.1 Cordyceps_kyusyuensis_EF468813.1 Cordyceps_militaris_AY184966.1 Cordyceps_kuiburiensis_BCC90322 Cordyceps_kuiburiensis_BCC90323 Cordyceps_coleopterorum_JF415988.1 Cordyceps_bifusispora_EF468806.1 Cordyceps_bifusispora_EF468807.1 Cordyceps_blackwellii_MF140701.1 Cordyceps_blackwellii_MF140702.1 Cordyceps_jakajanicola_BCC12807 Cordyceps_jakajanicola_BCC12839 Cordyceps_jakajanicola_BCC79816 Cordyceps_lepidopterorum_MF140699.1 Cordyceps_lepidopterorum_MF140700.1 Cordyceps_jakajanicola_BCC79817 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1460; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Saccharata_proteae_EU552145.1 gttgacctcggatcaggtagggatacccgctgaacttaagcatatcaataagcggaggaaaagaaaccaacagggattgcctcagtaacggcgagtgaagcggcaacagctcaaatttgaaatctggccctt-------tcagggtccgagt-tgtaatttgtagaggatgtttcggcgagtgctcccgtctaagttccttggaacaggacgtcatagagggtgagaatcccgtatgtgatgggttgcgcgagccatgtgaaactccttcgacgagtcgagttgtttgggaatgcagctctaaatgggaggtaaatttcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttggaaagagagttaaaaagtacgtgaaattgttgaaagggaagcgcttgcaaccagacttgccc-gcagttgctcaacccgcctcc-tggcgggtgtactcttctgc-gg--tcaggccagcatcagttcgggcggccggataaaggcgtcgggaatgtagctcctctcggggagtgttatagcccggcgcgacatgcggccagcc--tgga-ctgaggatctcgcttc----ggctaggatgctggcgtaatggttgtaagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgtcaaacccatgcgcg-taatgaaagtgaacggaggtgggaacgcgc--aagcgtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaagagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagtcagaggaaactctgatggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtat-aggggcgaaagactaatcgaaccatctagtagctggttcctgccga--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ophiocordyceps_sobolifera_AB968422.1 ---------------------------------------------------------------------------attgccctagtaacggcgagtgaagcggcaacagctcaaatttgaaatctggcccccccc-ccgcgggggcccgagt-tgtaatttgcagaggatgcttctg-gcgcggcgccttccgagttccctggaacgggacgccatagagggtgagagccccg--tctggtcggccgccaagcctctgtgaagctccttcgacgagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaataccggccagagaccgatagcggacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaacagtacgtgaaattgttgaaagggaagcgctcgcgaccagactcgggc-ccggcggatcatccggcgttcctcgccggtgcactccgccggcgc--ccgggccagcatcggctcgccgcgggggataaaggcggcgggaacgtggcccc--tccgggggtgttatagcccgccgcgcaatgc-cccgcgccgcggg-ccgaggaccgcgccct--a-ggcaaggatgctggcgtaatggtcgctagcgac??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ophiocordyceps_sobolifera_EF468828.1 -------------------------------------------------------------------------------------taacggcgagtgaagcggcaacagctcaaatttgaaatctggcccccccc---gcgggggcccgagt-tgtaatttgcagaggatgcttctg-gcgcggcgccttccgagttccctggaacgggacgccatagagggtgagagccccg--tctggtcggccgccaagcctctgtgaagctccttcgacgagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaataccggccagagaccgatagcggacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaacagtacgtgaaattgttgaaagggaagcgctcgcgaccagactcgggc-ccggcggatcatccggcgttc-tcgccggtgcactccgccggcgc--ccgggccagcatcggctcgccgcgggggataaaggcggcgggaacgtggcccc--tccgggggtgttatagcccgccgtgccatgc-cccgcgccgcggg-ccgaggaccgcgccct--agtgcaaggatgctggcgtaatggtcgccagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-gaatgaaagtgaacgtaggtgagagccctc--gcgggcgcatcaccgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtgtagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaacatgggcat-gggggcgaaagactaatcg------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Ophiocordyceps_longissima_EF468817.1 ---------------------------------------------------------------------------attgccctagtaacggcgagtgaagcggcagtagctcaaatttgaaatctggctcccccc-cgcggggtgcccgagt-tgtaatttgcagaggatgcctctg-gcgcggcgccttccgagttccctggaacgggacgccatagagggtgagagccccg--tatggtcggcagccaagcctctgtgaggctccttcgacgagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaacagtacgtgaaattgttgaaagggaagcgctcgcgaccagactcgggc-ccggcggatcatccggcgttcttcgccggtgcactccgccggcgc--ccgggccagcatcggctcgccgcgggggataaaggcggcgggaacgtggcccc--tccgggggtgttatagcccgccgcgcaatgc-cccgcgc--cggg-ccgaggaccgcgcccc--agggcaaggatgctggcgtaatggtcgctagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-caatgaaagtgaacgcgggtgagagccctc--gcgggcgcatcaccgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtgtagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaacatgggcat-gggggcgaaagactaatcgaaccttctagtagctgg------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ophiocordyceps_longissima_AB968420.1 ---------------------------------------------------------------------------attgccctagtaacggcgagtgaagcggcagcagctcaaatttgaaatctggctcccccc-cgcggggtgcccgagt-tgtaatttgcagaggatgcctctg-gcgcggcgccttccgagttccctggaacgggacgccatagagggtgagagccccg--tatggtcggcagccaagcctctgtgaggctccttcgacgagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaacagtacgtgaaattgttgaaagggaagcgctcgcgaccagactcgggc-ccggcggatcatccggcgttcttcgccggtgcactccgccggcgc--ccgggccagcatcggctcgccgcgggggataaaggcggcgggaacgtggcccc--tccgggggtgttatagcccgccgcgcaatgc-cccgcgc--cggg-ccgaggaccgcgcccc--agggcaaggatgctggcgtaatggtcgctagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-caatgaaagtgaacgcgggtgagagccctc--gcgggcgcatcaccgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtgtagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaacatgggcat-gggggcgaaagactaatcgaaccttctagtagctgg------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ophiocordyceps_myrmecophila_MH028159.1 -------------------------------------------------------------------------------ccctagtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcctct--------aggggtccgagt-tgtaatttgcagaggatgcttttg-gtagagcactatccgagttccctggaatgggacgccacagagggtgagagccccg--tctggttagctgcaaagcctctataaagctccttcaacgagtcgagtagtttgggaatgctgctcaaagtgggaggtatatgtcttctaaagctaaataccggctagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtgaaattgctaaaagggaagcacttacaactagacgtgggg-gcgtgcaatcacctagtattc-gtactagggcacttaggcgcct---ctaggctagcattagtttgctgtaggggataaagacgctaggaacgtagcccc--ctcgggggtgttatagcctagcgtataatgc-cctatgg--caga-ctaaggtccgcgc-----tctgcaaggatgctggcataatagttgttagtgacccgtcttgaaacacgg-ccaaggagtcgtcctcgtatgcgagtgtttgggtgttaaacccgtgcgcg-gaatgaaagtaaacgtaggtgagagccctc--tagggcgcattaccgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgcgtagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaacgtgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttccgccgaagtttccctcaggatagcagtgtcgatctcagttttatgaggtaaagcgaatgattagggactcgggggcgctttctagccttcatccattctcaaactttaaatatgtaagaagcccttgttgctttattgaacgtgggcattcgaatgtagcgacactagtgggccatttttggtaagcagaact-ggcgatgcgggatgaaccgaacgcgagg--ttaaggtgccggagtgg-acgctcatcagacaccac--aaaaggcgttagtacatctt-gacagca-ggacggtgg---ccatggaagtcggaatccgctaaggactgtgtaacaactcacctgccgaatgtactagccctgaaaatggatggcgctcaagcgtcccacccatacctcgcccttagggcaggaacgaagccctaagga-gtaggcggacgtagg-ggtcg----------------------------------------- Ophiocordyceps_tricentri_AB968423.1 -----------------------------------------atatcaataagcggaggaaaagaaaccaacagggattgccctagtaacggcgagtgaagcggcaatagctcaaatttgaaatctggcttctaaa----ca-aagtccgagt-tgtaatttgcagaggatgcttttg-gtacggcaccgaacaagttccctggaacgggacgccacagagggtaagagccccg--tctggtcggaagcctagcctctataaagctccttcgacgagtcgagtagtttgggaatgctgctcaaattgggaggtatatgtcttctaaagctaaataccggctagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtgaaattgctaaaagggaagcgcttacaactagacgtggggagtgttcaatcacctagtgttcttcactggggcacttgggcgtttt--ccaggccagcatcggtttgctacgggggataaagacgctaggaatgtagcccccttcggggggtgttatagtctagtgtgtaatgc-cctgtag--caga-ccgaggtctgcgcatt--cttgcaaggatgctggcgtaatagttgttagtgacccgtcttgaaacacggaccaaggagtcgtcctcgtatgcgagtgtttgggtgtaaaacccctgcgca-aaatgaaagtaaacgtaggtgagagcttgtaacagagtgcatcaccgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgcgtagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaacgtgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttccgcc----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ophiocordyceps_irangiensis_AF327389.1 -----------------------------ctgaacttaagcatatcaataagcggaggaaaagaaaccaacagggattgccctagtaacggcgagtgaagcggcaatagctcaaatttgaaatctggcttccttttttataggggtccgagtgtgtaatttgcagaggatgcttttg-gcacagcactgaacaagtt-cctggaacgggacgccacagagggtgagagccccg--tctggtcagacgcctagcctctataaagctccttcaacgagtcgagtagtttgggaatgctgctcaaattgggaggtatatgtcttctaaagctaaataccggctagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtgaaattgctaaaagggaagcgcttacaactagacgtaggg-gtattcaatcacctagtattttttactagggcatttgggtatatttcctaggctagcatcggtttgctatgggggagaaagacgctaggaatgtagcccc--tcggggggtgttatagcctagtgtgtaatgc-cctgtag--caga-ccgaggtctgcgcattttactgcaaggatgctggcgtaatagttgttagcgacccgtcttgaaacacggaccaaggagtcgtcctcgtatgcgagtatttgggtgtaaaacccctgtgcgaaaatgaaagtgaagctaggtgagagcctgtaatatggtgcatcaccgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatacctgcgtagggtgaagccagaggaaactctggtggaggctcgca--ggttctgacgtgcaaatcgatcgtcaaacgtgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttccgccgaagttt-cctcaggatagcagtgtcgagctcagttttatgaggtaaagcgaatgattagggactcgggggcgccttttagccttcatccattctcaaactttaaatatgtaagaagcccttgttgctttattgaacgtgggccttcgaatgtagcgacactagtgggccatttttggtaagcagaact-ggcgatgcgggat-aaccgaacgcgagg--ttaaggtgccggagtgg-acgctcatcagacaccac--aaaaggcgttagtacatctt-gacagca-ggacggtgg---ccatggaagtcggaatccgctaaggactgtgtaacaactcacctgccgaatgtactagccctgaaaatggatgggcctcaagcgtcccacccatacctcgcccttggggtaggatcgaagccctaagga-gtaggcggacgtaga-ggtcata-----------------------t--------------- Ophiocordyceps_sphecocephala_JN941445.1 -----------------------------------------atatcaataagcggaggaaaagaaaccaacagggattgccctagtaacggcgagtgaagcggcaacagctcaaatttgaaatctggcttcctct----caggagtccgagt-tgtaatttgcagaggatgcttttg-gtgcggcaccgaacaagttccctggaacgggacgccacagagggtgagagccccg--tctggtcggacgcctagcctctataaagctccttcgacgagtcgagtagtttgggaatgctgctcaaatcgggaggtatatgtcttctaaagctaaataccggctagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtgaaattgctaaaagggaagcgcttacaactagacgtaggg-gcattcaatcacctggtggtttccactagggcacttgggtgtttttcctaggccagcatcggtttgctacgggggataaagacgctaggaatgtggccccctttagggggtgttatagcctagcgtgtaatgc-cctgtag--caga-ccgaggtctgcgtatt--tatacaaggatgctggcgtaatagttgttagcgacccgtcttgaaacacggaccaaggagtcgtcctcgtatgcgagtatatgggtgtaaaacccctgtgcg-aaatgaaagtgaacgtaggtgagagcctgtaacagggtgcatcaccgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgcgtagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaacgtgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttccgc------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Ophiocordyceps_sphecocephala_AF327390.1 -----------------------------ctgaacttaagcatatcaataagcggaggaaaagaaaccaacagggattgccctagtaacggcgagtgaagcggcaacagctcaaatttgaaatctggcttcctct----caggagcccgagt-tgtaatttgcagaggatgcttttg-gcacggcaccgaacaagttccctggaacgggacgccacagagggtgagagccccg--tctggtcggacgcctagcctctataaagctccttcgacgagtcgagtagtttgggaatgctgctcaaattgggaggtatatgtcttctaaagctaaataccggctagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagcacgtgaaattgctaaaagggaagcgcttacaactagacgtaggg-gcattcaatcacctggtggtttccgcca-ggcacttgggtgtttttcctaggccagcatcggtttgctgcgggggataaagacgctaggaatgtagcctc--tcggggggtattatagcctggcgcgtaatgc-cctgcag--cagagccgaggtctgcgtattc-tgtacaaggatgctggcgtaatagttgttagcgacccgtcttgaaacacggaccaaggagtcgacctcgtatgcgagtatttgggtgtaaaacccctgtgcg-aaatgaaagtgaagctaggtgagagcctgttacagggtgcatcaccgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgcgtagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaacgtgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttccgccgaagttt-cctcaggatagcagtgtcgagctcagttttatgaggtaaagcgaatgattagggactcgggggcgccttttagccttcatccattctcaaactttaaatatgtaagaagcccttgttgctttattgaacgtgggccttcgaatgtagcgacactagtgggccatttttggtaagcagaact-ggcgatgcgggatgaaccgaacgcgagg--ttaaggtgccggagtgg-acgctcatcagacaccac--aaaaggcgttagtacatctt-gacagca-ggacggtgg---ccatggaagtcggaatccgctaaggactgtgtaacaactcacctgccgaatgtactagccctgaaaatggatggcgctcaagcgtcccacccatacctcgcccttggggcaggatcgaagccccaagga-gtaggcggacgtagg-ggttatagagcacgaacgctataagtgagcc--------------- Trichoderma_koningii_AF399239.1 -------------------------------------------------------------------------------------------------------------------????aaatctggcccct---------agggtccgagt-tgtaatttgtagaggatgcttttg-gtgaggtgccgcccgagttccctggaacgggacgccgcagagggtgagagccccg--tctggctggccaccgagcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcaccttgaaaagagggttaaacagtacgtgaaattgttgaaagggaagcgcttgtgaccagacttgggc-gcggcgaatcatccggggttc-tctccggtgcacttcgccgt-gt--tcaggccagcatcagttcggcgcgggggaaaaaggcttcgggaacgtggctgc--tccggcagtgttatagcccgttgcataatac-cctgcgc--tgga-ctgaggaccgcgcatc----tgcaaggatgctggcgtaatggtcaccagcgacccgtcttgaaacacggaccaaggag?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Trichoderma_strigosum_MH398565.1 --------------------------------------------------------------------------------------aacggcgagtgaagcggcaacagctcaaatttgaaatctggcccct---------agggtccgagt-tgtaatttgtagaggatgcttttg-gtgaggtgccgcccgagttccctggaacgggacgccacagagggtgagagccccg--tctggctggccaccgagcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcaccttgaaaagagggttaaacagtacgtgaaattgttgaaagggaagcgcttgtgaccagacttgggc-gcggcggatcatccggggttc-tccccggtgcacttcgccgc-gt--tcaggccagcatcagttcggcgcgggggaaaaaggcttcgggaacgtggctgc--tccggcagtgttatagcccgttgcataatac-cctgcgc--tgga-ctgaggaccgcgcatc----tgcaaggatgctggcgtaatggtcaccagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-taatgaaagtgaacgcaggtgagagctt------cggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatatgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttccgccgaagtttccctcaggatagcagtgttgatctcagttttatgaggtaaagcgaatgattagggactcgggggcgctatattgccttcatccattctcaaactttaaatatgtaagaagcccttgttgcttagttgaacgtgggcattcgaatgtatcaacactagtgggccatttttggtaagcagaact-ggcgatgcgggatgaaccgaacgcgagg--ttaaggtgccagagtag-acgctcatcagacaccac--aaaaggcgttagtacatctt-gacagca-ggacggtgg---ccatggaagtcggaatccgctaaggactgtgtaacaactcacctgccgaatgtactagccctgaaaatggatggcgctcaagcgtctcacccatacctcgccctcggggtagaaacgatgccccgagga-gtaggcggacgtgga-ggtcgtgacgaa---------------------------------- Trichoderma_aestuarinum_MN535286 -----------------------------------------------------------aaagaaaccaacagggattgccccagtaacggcgagtgaagcggcaacagctcaaatttgaaatctggcccct---------agggtccgagt-tgtaatttgtagaggatgcttttg-gtgaggtgccgcccgagttccctggaacgggacgccgcagagggtgagagccccg--tctggctggacaccgagcctctgtgaagctccttcgacgagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcaccttgaaaagagggttaaacagtacgtgaaattgttgaaagggaagcgcttgtgaccagacttgggc-gcggcggatcatccggggttc-tccccggtgcacttcgccgc-gt--tcaggccagcatcagttcggcgcgggggaaaaaggcttcgggaacgtggctcc--tccgggagtgttatagcccgttgcataatac-cctgcgc--tgga-ctgaggaccgcgcatc----tgcaaggatgctggcgtaatggtcaccagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-taatgaaagtgaacgcaggtgagagctt------cggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatatgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttccgccgaagtttccctcaggatagcagtgttgatctcagttttatgaggtaaagcgaatgattagggactcgggggcgctatattgccttcatccattctcaaactttaaatatgtaagaagcccttgttgcttaattgaacgtgggcattcgaatgtatcaacactagtgggccatttttggt------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Trichoderma_viride_AY489726.1 -----------------------------------------------------------------------agggattgccccagtaacggcgagtgaagcggcaacagctcaaatttgaaatctggcccct---------agggtccgagt-tgtaatttgtagaggatgcttttg-gtgaggtgccgcccgagttccctggaacgggacgccgcagagggtgagagccccg--tctggctggccaccgagcctctgtaaagctccttcaacgagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcaccttgaaaagagggttaaacagtacgtgaaattgttgaaagggaagcgcttgtgaccagacttgggc-gcggcggatcatccggggttc-tccccggtgcacttcgccgc-gt--tcaggccagcatcagttcggcgcgggggaaaaaggcttcgggaacgtggctcc--tccgggagtgttatagcccgttgcataatac-cctgtgc--tgga-ctgaggaccgcgcatc----tgcaaggatgctggcgtaatggtcaccagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-taatgaaagtgaacgcaggtgagagctt------cggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatatgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttccgccgaagtttccctcaggatagcagtgttgatctcagttttatgaggtaaagcgaatgattagggactcgggggcgctatattgccttcatccattctcaaactttaaatatgtaagaagcccttgttgcttaattgaacgtgggcattcgaatgtatcaacactagtgggccatttttggtaagcagaact-ggcgatgcgggatgaaccgaacgcgagg--ttaaggtgccagagtag-acgctcatcagacaccac--aaaaggcgttagtacatctt-gacagca-ggacggtgg---ccatggaagtcggaatccgctaaggactgtgtaacaactcacctgccgaatgtactagccctgaaaatggatggcgctcaagcgtctcacccatacctcgccctcggggtagaaacgatgccccgagga-gtaggcggacgtgga-g--------------------------------------------- Trichoderma_viridescens_HM535608.1 -------------------------------------------------------------------------------ccccagtaacggcgagtgaagcggcaacagctcaaatttgaaatctggcccct---------agggtccgagt-tgtaatttgtagaggatgcttttg-gtgaggtgccgcccgagttccctggaacgggacgccgcagagggtgagagccccg--tctggctggccaccgagcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcaccttgaaaagagggttaaacagtacgtgaaattgttgaaagggaagcgcttgtgaccagacttgggc-gcggcggatcatccggggttc-tccccggtgcacttcgccgc-gt--tcaggccagcatcagttcggcgcgggggaaaaaggcttcgggaacgtggctcc--tccgggagtgttatagcccgttgcataatac-cctgcgc--tgga-ctgaggaccgcgcatc----tgcaaggatgctggcgtaatggtcaccagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-taatgaaagtgaacgcaggtgagagctt------cggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatatgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttccgccgaagtttccctcaggatagcagtgttgatctcagttttatgaggtaaagcgaatgattagggactcgggggcgctatattgccttcatccattctcaaactttaaatatgtaagaagcccttgttgcttaattgaacgtgggcattcgaatgtatcaacactagtgggccatttttggtaagcagaact-ggcgatgcgggatgaaccgaacgcgagg--ttaaggtgccagagtag-acgctcatcagacaccac--aaaaggcgttagtacatctt-gacagca-ggacggtgg---ccatggaagtcggaatccgctaaggactgtgtaacaactcacctgccgaatgtactagccctgaaaatggatggcgctcaagcgtctcacccat-------------------------------------------------------------------------------------------------- Trichoderma_reesei_MF780714.1 gttgacctcggatcaggtaggaatacccgctgaacttaagcatatcaataagcggaggaaaagaaaccaacagggattgccccagtaacggcgagtgaagcggcaacagctcaaatttgaaatctggcccct---------agggtccgagt-tgtaatttgtagaggatgcttttg-gtgaggtgccgcccgagttccctggaacgggacgccacagagggtgagagccccg--tctggctggccaccgagcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcaccttgaaaagagggttaaatagtacgtgaaattgttgaaagggaagcgcttgtgaccagacttgggc-gcggcggatcatccggggttc-tctccggtgcacttcgccgc-gt--ctaggccagcatcagttcgtcgcgggggaaaaaggcttcgggaacgtggctcc--tccgggagtgttatagcccgttgcataatac-cctgcgg--tgga-ctgaggaccgcgcatc----tgcaaggatgctggcgtaatggtcaccagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-taatgaaagtgaacgcaggtgagagctt------cggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatatgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttccgccgaagtttccctcaggatagcagtgttgagctcagttttatgaggtaaagcgaatgattagggacccgggggcgctatattgccttcatccattctcaaactttaaatatgtaagaagcccttgttacttagttgaacgtgggcattcgaatgtatcaacactagtgggccatttttggtaagcagaact-ggcgatgcgggatgaaccgaacgcgagg--ttaaggtgccagagtag-acgctcatcagacaccac--aaaaggcgttagtacatctt-gacagca-ggacggtgg---ccatggaagtcggaatccgctaaggactgtgtaacaactcacctgccgaatgtactagccctgaaaatggatggcgctcaagcgtctcacccatacctcgccctcggggtagaaacgatgccccgagga-gtaggcggacgtgga-ggtcgtgacgaagcctagggcgtgagcccgggtcgaacggcctcta Trichoderma_hamatum_HM466686.1 -------------------------------------------------------------------------------ccccagtaacggcgagtgaagcggcaacagctcaaatttgaaatctggcccct--------ccgggtccgagt-tgtaatttgtagaggatgcttttg-gtgaggtgccgcccgagttccctggaacgggacgccacagagggtgagagccccg--tctggctggccaccgagcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcaccttgaaaagagggttaaacagtacgtgaaattgttgaaagggaagcgcttgtgaccagacttgggc-gcggcggatcatccggggttc-tctccggtgcacttcgccgc-gt--tcaggccagcatcagttcgtcgcgggggaaaaaggcttcgggaacgtggctcc--tccgggagtgttatagcccgttgcataatac-cctgcgg--tgga-ctgaggaccgcgcatc----tgcaaggatgctggcgtaatggtcaccagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-taatgaaagtgaacgcaggtgagagctt------cggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatatgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttccgccgaagtttccctcaggatagcagtgttgagctcagttttatgaggtaaagcgaatgattagggactcgggggcgctatattgccttcatccattctcaaactttaaatatgtaagaagcccttgttacttagttgaacgtgggcattcgaatgtatcaacactagtgggccatttttggtaagcagaact-ggcgatgcgggatgaaccgaacgcgagg--ttaaggtgccagagtag-acgctcatcagacaccac--aaaaggcgttagtacatctt-gacagca-ggacggtgg---ccatggaagtcggaatccgctaaggactgtgtaacaactcacctgccgaatgtactagccctgaaaatggatggcgctcaagcgtctcacccatacctcgccctc--------------------------------------------------------------------------------------- Trichoderma_asperellum_MF780711.1 -----------------------------------------------------------------------------tgccccagtaacggcgagtgaagcggcaacagctcaaatttgaaatctggcccct--------ccgggtccgagt-tgtaatttgtagaggatgcttttg-gtgaggtgccgcccgagttccctggaacgggacgccacagagggtgagagccccg--tctggctggccaccgagcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcaccttgaaaagagggttaaacagtacgtgaaattgttgaaagggaagcgcttgtgaccagacttgggc-gcggcggatcatccggggttc-tctccggtgcacttcgccgc-gt--tcaggccagcatcagttcgtcgcgtgggaaaaaggcttcgggaacgtggctcc--tccgggagtgttatagcccgttgcataatac-cctgcgg--tgga-ctgaggaccgcgcatc----tgcaaggatgctggcgtaatggtcaccagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-taatgaaagtgaacgcaggtgagagctt------cggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatatgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttccgccgaagtttccctcaggatagcagtgttgagctcagttttatgaggtaaagcgaatgattagggactcgggggcgctatattgccttcatccattctcaaactttaaatatgtaagaagcccttgttacttagttgaacgtgggcattcgaatgtatcaacactagtgggccatttttggtaagcagaact-ggcgatgcgggatgaaccgaacgcgagg--ttaaggtgccagagtag-acgctcatcagacaccac--aaaaggcgttagtacatctt-gacagca-ggacggtgg---ccatggaagtcggaatccgctaaggactgtgtaacaactcacctgccgaatgtactagccctgaaaatggatggcgctcaagcgtctcacccatacctcgccctcggggtagaaacgatgccccgaggatgtaggcggacgtggatggtcgtgacgaagccta----------------------------- Trichoderma_asperellum_MG675227.1 -----------------------------------------------------aaccgggaggagaacaacagggattgccccagtaacggcgagtgaagcggcaacagctcaaatttgaaatctggcccct--------ccgggtccgagt-tgtaatttgtagaggatgcttttg-gtgaggtgccgcccgagttccctggaacgggacgccacagagggtgagagccccg--tctggctggccaccgagcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcaccttgaaaagagggttaaacagtacgtgaaattgttgaaagggaagcgcttgtgaccagacttgggc-gcggcggatcatccggggttc-tctccggtgcacttcgccgc-gt--tcaggccagcatcagttcgtcgcgggggaaaaaggcttcgggaacgtggctcc--tccgggagtgttatagcccgttgcataatac-cctgcgg--tgga-ctgaggaccgcgcatc----tgcaaggatgctggcgtaatggtcaccagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-taatgaaagtgaacgcaggtgagagctt------cggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatatgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttccgccgaagtttccctcaggatagcagtgttgagctcagttttatgaggtaaagcgaatgattagggactcgggggcgctatattgccttcatccattctcaaactttaaatatgtaagaagcccttgttacttagttgaacgtgggcattcgaatgtatcaacactagtgggccatttttggtaagcagaactgggcgatgcgggatgaaccgaacgcgaaggttaagggtgccaaaatagaaccctcatcagaacccaccaaaaggcgtttagtacttcttggacagcagggacggtgggccctgggaaatccggaatccccctaaaggactgtggtaacaaactcacctggcgca-----------aaggtataaacccc----------------------------------------------------------------------------------------------------------------- Cordyceps_rosea_MF416536.1 -------------------------------------------------------------------------------------------------------------------tttgaaatctggccact----------gggtccgagt-tgtaatttgcagaggatgcttttg-gcgaggtgccttccgagttccctggaacgggacgccatagagggtgagagccccg--tctggtcggacaccgagcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaaaagtacgtgaaattgttgaaagggaagcgcctatgaccagacttgggc-ccggcgaatcacccagcgttc-tcgctggtgcacttcgccgg-gc--acaggccagcatcagtttggcgcgggggacaaaggcttcgggaatgtggctcc--actgggagtgttatagcccgtcgcgcaatac-cctgcgc--tgga-ctgaggtgcgcgcatt----cgcaaggatgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-taatgaaagtgaacgcaggtgagagctt------cggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcgaatcgatcgtcaaatacgg------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Cordyceps_kyusyuensis_EF468813.1 -------------------------------------------------------------------------------------------------------------------tttgaaatctggccccc----------gggtccgagt-tgtaatttgtagaggatgcttttg-gcgaggtgccttccgagttccctggaacgggacgccatagagggtgagagccccg--tctggtcggacaccgagcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaaaagtacgtgaaattgttgaaagggaagcgcctatgaccagacttgggc-ccggtgaatcacccagcgttc-tcgctggtgcacttcgccgg-gc--acaggccagcatcagtttggcgcgggggagaaaggcttcgggaatgtggctcc--cccgggagtgttatagcccgttgcgcaatac-cctgcgc--tgga-ctgaggtacgcgcatt----cgcaaggatgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-taatgaaagtgaacgcaggtgagagctt------cggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcgaatcgatcgtcaaatatgggcat-gggggcgaaagactaatcgaaccttctagta------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Cordyceps_militaris_AY184966.1 -------------------------------------------------------------------------------------------------------------------tttgaaatctggccccc----------gggtccgagt-tgtaatttgtagaggatgcttttg-gcgaggtgccttccgagttccctggaacgggacgccatagagggtgagagccccg--tctggtcggacaccgagcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaaaagtacgtgaaattgttgaaagggaagcgcctatgaccagacttgggc-ccggtgaatcacccagcgttc-tcgctggtgcacttcgccgg-gc--acaggccagcatcagtttggcgcgggggagaaaggtttcgggaatgtggctcc--cccgggagtgttatagcccgttgcgcaatac-cctgcgc--tgga-ctgaggtacgcgcatt----cgcaaggatgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-taatgaaagtgaacgcaggtgagagctt------cggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcgaatcgatcgtcaaatatgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttc--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cordyceps_kuiburiensis_BCC90322 --------------------------------------agcatatcaataagcggaggaaaagaaaccaacagggattgccccagtaacggcgagtgaagcggcaacagctcaaatttgaaatctggcctcc----------gggtccgagt-tgtaatttgcagaggatgcttttg-gcgaggtgccttccgagttccctggaacgggacgccatagagggtgagagccccg--tctggtcggacaccgagcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaaaagtacgtgaaattgttgaaagggaagcgcctatgaccagacttgggc-ccggtgaatcacccagcgttc-tcgctggtgcactttgccgg-gc--acaggccagcatcagtttggcgcgggggataaaggtttcgggaatgtggctcc--cccgggagtgttatagcccgttgcggaatac-cctgcgc--cgga-ctgaggtacgcgcact-----gcaaggatgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-taatgaaagtgaacgtaggtgagagctt------cggcgcatcaccgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcgaatcgatcgtcaaatatgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttccgccgaagtttccctc----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cordyceps_kuiburiensis_BCC90323 --------------------------------------agcatatcaataagcggaggaaaagaaaccaacagggattgccccagtaacggcgagtgaagcggcaacagctcaaatttgaaatctggcctcc----------gggtccgagt-tgtaatttgcagaggatgcttttg-gcgaggtgccttccgagttccctggaacgggacgccatagagggtgagagccccg--tctggtcggacaccgagcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaaaagtacgtgaaattgttgaaagggaagcgcctatgaccagacttgggc-ccggtgaatcacccagcgttc-tcgctggtgcactttgccgg-gc--acaggccagcatcagtttggcgcgggggataaaggtttcgggaatgtggctcc--cccgggagtgttatagcccgttgcggaatac-cctgcgc--cgga-ctgaggtacgcgcact-----gcaaggatgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-taatgaaagtgaacgtaggtgagagctt------cggcgcatcaccgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcgaatcgatcgtcaaatatgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttccgcc----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cordyceps_coleopterorum_JF415988.1 ------------------------------------------------------------------------------------gtaacggcgagtgaagcggcaacagctcaaatttgaaatctggccccc----------gggcccgagt-tgtaatttatagaggatgcttcgg-gcgaggtgccttccgagttccctggaacgggacgccatagagggtgagagccccg--tctggtcggacaccgagcccgtgtgaagctccttcgaagagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaaaagtacgtgaaattgttgaaagggaagcgcccacgaccagacttgggc-ccggtgaatcacccggcgttc-tcgccagtgcactttgccgg-gc--acaggccagcatcagtttagcgcgggggataaaggcctcgggaaagtggctcc--ctcgggagtgttatagcccgtcgcgcaatac-cctgcgc--cgga-ctgaggtacgcgcatc-----gcaaggatgctggcgtaatggtcgtcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-gaatgaaagtgaacgcaggtgagagcta------cggcgcatcatcgaccgatcctgatgttctcggacggatttgagtaggagcatacggggccggacccgaaagaaggtgaactatgcctgtatagggtgaagccagaggaaactctggtggaagctcgcagcggttctgacgtgcgaatcgatcgtcaaatatgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttc--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cordyceps_bifusispora_EF468806.1 -------------------------------------------------------------------------------------------------------------------?????????????????----------gggtccgagt-tgtaatttgtagaggatgcttcgg-gcgaggtgccttccgagttccctggaacgggacgccacagagggtgagagccccg--tctggtcggacaccgagcccgtgtgaagctccttcgaagagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaaaagtacgtgaaattgttgaaagggaagcgcccatgaccagacttgggc-ccggtgaatcacccggcgttc-tcgccggtgcactttgccgg-gc--acaggccagcatcagtttggggcgggggataaaggcttcgggaacgtggctcc--ctcgggagtgttatagcccgttgcgcaatac-cctgcgc--cgga-ctgaggtacgcgcatc-----gcaaggatgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-gaatgaaagtgaacgcaggtgagagctt------cggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaggagcatacggggccggacccgaaagaaggtgaactatgcctgtatagggtgaagccagaggaaactctggtggaagctcgcagcggttctgacgtgcgaatcgatcgtc-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cordyceps_bifusispora_EF468807.1 -------------------------------------------------------------------------------------------------------------------tttgaaatctggccccc----------gggtccgagt-tgtaatttgtagaggatgcttcgg-gcgaggtgccttccgagttccctggaacgggacgccacagagggtgagagccccg--tctggtcggacaccgagcccgtgtgaagctccttcgaagagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaaaagtacgtgaaattgttgaaagggaagcgcccatgaccagacttgggc-ccggtgaatcacccggcgttc-tcgccggtgcactttgccgg-gc--acaggccagcatcagtttggggcgggggataaaggcttcgggaacgtggctcc--ctcgggagtgttatagcccgttgcgcaatac-cctgcgc--cgga-ctgaggtacgcgcatc-----gcaaggatgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-gaatgaaagtgaacgcaggtgagagctt------cggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtatagggtgaagccagaggaaactctggtggaagctcgcagcggttctgacgtgcgaatcgatcgtcaaatatgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttc--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cordyceps_blackwellii_MF140701.1 -------------------------------------------------------------------------------------------------------------------tttgaaatctggccctc----------gggtccgagt-tgtaatttgcagaggatgcttcgg-gcgaggtgccttccgagttccctggaacgggacgccatagagggtgagagccccg--tctggttggacaccgagcccgtgtgaagctccttcgaagagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaaaagtacgtgaaattgttgaaagggaagcgcccatgaccagacttgggc-ccggtgaatcacccggcgttc-tcgccggtgcactttgccgg-gc--acaggccagcatcagtttggcgcgggggacaaaggcttcgggaatgtggctcc--ctcgggagtgttatagcccgctgcgcaatac-cctgcgc--cgga-ctgaggtacgcgcatc-----gcaaggatgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-gaatgaaagtgaacgcaggtgagagctt------cggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtgtagggtgaagccagaggaaactctggtggaagctcgcagcggttctgacgtgcgaatcgatcgtcaaacatgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttc--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cordyceps_blackwellii_MF140702.1 -------------------------------------------------------------------------------------------------------------------tttgaaatctggccctc----------gggtccgagt-tgtaatttgcagaggatgcttcgg-gcgaggtgccttccgagttccctggaacgggacgccatagagggtgagagccccg--tctggttggacaccgagcccgtgtgaagctccttcgaagagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaaaagtacgtgaaattgttgaaagggaagcgcccatgaccagacttgggc-ccggtgaatcacccggcgttc-tcgccggtgcactttgccgg-gc--acaggccagcatcagtttggcgcgggggacaaaggcttcgggaatgtggctcc--ctcgggagtgttatagcccgctgcgcaatac-cctgcgc--cgga-ctgaggtacgcgcatc-----gcaaggatgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-gaatgaaagtgaacgcaggtgagagctt------cggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtgtagggtgaagccagaggaaactctggtggaagctcgcagcggttctgacgtgcgaatcgatcgtcaaacatgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttc--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cordyceps_jakajanicola_BCC12807 ------------------------------------------------------------------------------------gtaacggcgagtgaagcggcaacagctcaaatttgaaatctggccctc----------gggtccgagt-tgtaatttgcagaggatgcttcgg-gcgaggtgccttccgagttccctggaacgggacgccatagagggtgagagccccg--tctggtcggacaccgagcccgtgtgaagctccttcgaagagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaaaagtacgtgaaattgttgaaagggaagcgcccatgaccagacttgggc-ccggtgaatcatccggcgttc-tcgccggtgcactttgccgg-gc--acaggccagcatcagtctggcgcgggggataaaggcttcgggaatgtggctcc--ctcgggagtgttatagcccgttgcgcaatac-cctgcgc--cgga-ctgaggtacgcgcatc-----gcaaggatgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-gaatgaaagtgaacgcaggtgagagctt------cggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtatagggtgaagccagaggaaactctggtggaagctcgcagcggttctgacgtgcgaatcgatcgtcaaatatgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttc--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cordyceps_jakajanicola_BCC12839 ------------------------------------------------------------------------------------gtaacggcgagtgaagcggcaacagctcaaatttgaaatctggccctc----------gggtccgagt-tgtaatttgcagaggatgcttcgg-gcgaggtgccttccgagttccctggaacgggacgccatagagggtgagagccccg--tctggtcggacaccgagcccgtgtgaagctccttcgaagagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaaaagtacgtgaaattgttgaaagggaagcgcccatgaccagacttgggc-ccggtgaatcatccggcgttc-tcgccggtgcactttgccgg-gc--acaggccagcatcagtctggcgcgggggataaaggcttcgggaatgtggctcc--ctcgggagtgttatagcccgttgcgcaatac-cctgcgc--cgga-ctgaggtacgcgcatc-----gcaaggatgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-gaatgaaagtgaacgcaggtgagagctt------cggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtatagggtgaagccagaggaaactctggtggaagctcgcagcggttctgacgtgcgaatcgatcgtcaaatatgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttc--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cordyceps_jakajanicola_BCC79816 ------------------------------------------------------------------------------------gtaacggcgagtgaagcggcaacagctcaaatttgaaatctggccctc----------gggtccgagt-tgtaatttgcagaggatgcttcgg-gcgaggtgccttccgagttccctggaacgggacgccatagagggtgagagccccg--tctggtcggacaccgagcccgtgtgaagctccttcgaagagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaaaagtacgtgaaattgttgaaagggaagcgcccatgaccagacttgggc-ccggtgaatcatccggcgttc-tcgccggtgcactttgccgg-gc--acaggccagcatcagtctggcgcgggggataaaggcttcgggaatgtggctcc--ctcgggagtgttatagcccgttgcgcaatac-cctgcgc--cgga-ctgaggtacgcgcatc-----gcaaggatgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-gaatgaaagtgaacgcaggtgagagctt------cggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtatagggtgaagccagaggaaactctggtggaagctcgcagcggttctgacgtgcgaatcgatcgtcaaatatgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttc--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cordyceps_lepidopterorum_MF140699.1 -------------------------------------------------------------------------------------------------------------------tttgaaatctggccctc----------gggtccgagt-tgtaatttgcagaggatgcttcgg-gcgaggtgccttccgagttccctggaacgggacgccatagagggtgagagccccg--tctggtcggacaccgagcccgtgtgaagctccttcgaagagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaaaagtacgtgaaattgttgaaagggaagcgcccatgaccagacttgggc-ccggtgaatcatccggcgttc-tcgccggtgcactttgccgg-gc--acaggccagcatcagtctggcgcgggggataaaggcttcgggaatgtggctcc--ctcgggagtgttatagcccgttgcgcaatac-cctgcgc--cgga-ctgaggtacgcgcatc-----gcaaggatgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-gaatgaaagtgaacgcaggtgagagctt------cggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtatagggtgaagccagaggaaactctggtggaagctcgcagcggttctgacgtgcgaatcgatcgtcaaatatgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttc--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cordyceps_lepidopterorum_MF140700.1 -------------------------------------------------------------------------------------------------------------------tttgaaatctggccctc----------gggtccgagt-tgtaatttgcagaggatgcttcgg-gcgaggtgccttccgagttccctggaacgggacgccatagagggtgagagccccg--tctggtcggacaccgagcccgtgtgaagctccttcgaagagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaaaagtacgtgaaattgttgaaagggaagcgcccatgaccagacttgggc-ccggtgaatcatccggcgttc-tcgccggtgcactttgccgg-gc--acaggccagcatcagtctggcgcgggggataaaggcttcgggaatgtggctcc--ctcgggagtgttatagcccgttgcgcaatac-cctgcgc--cgga-ctgaggtacgcgcatc-----gcaaggatgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-gaatgaaagtgaacgcaggtgagagctt------cggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtatagggtgaagccagaggaaactctggtggaagctcgcagcggttctgacgtgcgaatcgatcgtcaaatatgggcat-gggggcgaaagactaatcgaaccttctagtagctggtttc--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cordyceps_jakajanicola_BCC79817 ------------------------------------------------------------------------------------gtaacggcgagtgaagcggcaacagctcaaatttgaaatctggccctc----------gggtccgagt-tgtaatttgcagaggatgcttcgg-gcgaggtgccttccgagttccctggaacgggacgccatagagggtgagagccccg--tctggtcggacaccgagcccgtgtgaagctccttcgaagagtcgagtagtttgggaatgctgctcaaaatgggaggtatatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaaaagtacgtgaaattgttgaaagggaagcgcccatgaccagacttgggc-ccggtgaatcatccggcgttc-tcgccggtgcactttgccgg-gc--acaggccagcatcagtctggcgcgggggataaaggcttcgggaatgtggctcc--ctcgggagtgttatagcccgttgcgcaatac-cctgcgc--cgga-ctgaggtacgcgcatc-----gcaaggatgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcg-gaatgaaagtgaacgcaggtgagagctt------cggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtgaactatgcctgtatagggtgaagccagaggaaactctggtggaagctcgcagcggttctgacgtgcgaatcgatcgtcaaatatgggcatggggggcgaaagactaatcgaaccttctagtagctggtttc--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN mrbayes; outgroup Saccharata_proteae_EU552145.1; charset locus1 = 1 -1460; charset excludedchars = 1 -115 913 -1460; exclude excludedchars; partition AllLoci = 1 : locus1; log start filename = FungalPlanetSordarioCordycepsLSU015newnew.log; END; BEGIN mrbayes; set partition = AllLoci; prset statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); lset nst = 6 rates = invgamma; unlink shape = ( all ) pinvar = ( all ) statefreq = ( all ) revmat = ( all ); mcmcp ngen = 10000000000 nchains = 4 printfreq = 10 temp = 0.15 samplefreq = 10 savebrlens = yes stoprule = yes stopval = 0.05 filename = FungalPlanetSordarioCordycepsLSU015newnew; mcmc; sump; sumt; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 1460; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 1460; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 1460; END; BEGIN TREES; Title 'Fig. 6. Overview Sordariomycetes (Cordycipitaceae and Ophiocordycipitaceae) LSU phylogeny'; ID 017b9be8a30e22; LINK Taxa = Taxa; TRANSLATE [0] 1 Saccharata_proteae_EU552145.1, [1] 2 Ophiocordyceps_sobolifera_AB968422.1, [2] 3 Ophiocordyceps_sobolifera_EF468828.1, [3] 4 Ophiocordyceps_longissima_EF468817.1, [4] 5 Ophiocordyceps_longissima_AB968420.1, [5] 6 Ophiocordyceps_myrmecophila_MH028159.1, [6] 7 Ophiocordyceps_tricentri_AB968423.1, [7] 8 Ophiocordyceps_irangiensis_AF327389.1, [8] 9 Ophiocordyceps_sphecocephala_JN941445.1, [9] 10 Ophiocordyceps_sphecocephala_AF327390.1, [10] 11 Trichoderma_koningii_AF399239.1, [11] 12 Trichoderma_strigosum_MH398565.1, [12] 13 Trichoderma_aestuarinum_MN535286, [13] 14 Trichoderma_viride_AY489726.1, [14] 15 Trichoderma_viridescens_HM535608.1, [15] 16 Trichoderma_reesei_MF780714.1, [16] 17 Trichoderma_hamatum_HM466686.1, [17] 18 Trichoderma_asperellum_MF780711.1, [18] 19 Trichoderma_asperellum_MG675227.1, [19] 20 Cordyceps_rosea_MF416536.1, [20] 21 Cordyceps_kyusyuensis_EF468813.1, [21] 22 Cordyceps_militaris_AY184966.1, [22] 23 Cordyceps_kuiburiensis_BCC90322, [23] 24 Cordyceps_kuiburiensis_BCC90323, [24] 25 Cordyceps_coleopterorum_JF415988.1, [25] 26 Cordyceps_bifusispora_EF468806.1, [26] 27 Cordyceps_bifusispora_EF468807.1, [27] 28 Cordyceps_blackwellii_MF140701.1, [28] 29 Cordyceps_blackwellii_MF140702.1, [29] 30 Cordyceps_jakajanicola_BCC12807, [30] 31 Cordyceps_jakajanicola_BCC12839, [31] 32 Cordyceps_jakajanicola_BCC79816, [32] 33 Cordyceps_lepidopterorum_MF140699.1, [33] 34 Cordyceps_lepidopterorum_MF140700.1, [34] 35 Cordyceps_jakajanicola_BCC79817; TREE 'Fig. 6. Overview Sordariomycetes (Cordycipitaceae and Ophiocordycipitaceae) LSU phylogeny' = (1:0.2405913,(((13:0.003589658,14:0.003666573,15:0.0004512327):0.00218387,(11:0.007153666,12:0.001610612):0.003701858,(16:0.004467696,(17:0.001038753,18:0.002178427,19:0.0006722959):0.002239458):0.004259103):0.024375,((((23:0.001271978,24:0.001443385):0.01027989,(((28:0.001251775,29:0.001043126):0.0055094,(30:0.0007907655,31:0.00108788,32:0.0007874949,33:0.0009140431,34:0.0009182152,35:0.0007025237):0.003370531):0.002975693,((26:0.002194967,27:0.0008888057):0.004618341,25:0.0171045):0.001997373):0.01926428):0.003183938,(21:0.001271957,22:0.001701775):0.00266698):0.004244444,20:0.009011593):0.02674904):0.02550813,(((2:0.001361002,3:0.006448928):0.003442709,(4:0.001393821,5:0.0006246304):0.0168785):0.03768814,(6:0.05391781,(7:0.01990024,((9:0.009263056,10:0.02227713):0.01022584,8:0.02661618):0.01339806):0.03040962):0.1097554):0.019183); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1630408628961; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3003914071748829338; tell It; setDefaultOrder 34 25 26 27 28 29 30 33 31 32 1 2 0 3 4 5 6 7 8 11 12 13 9 10 24 21 22 14 15 16 17 18 19 20 23; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8795386097760582625; mqVersion 370; checksumv 0 3 3448608421 null getNumChars 1460 numChars 1460 getNumTaxa 35 numTaxa 35 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 666098.0 sumSquares -4.116852108650129E22 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 259; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1128 711; setLocation 689 96; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #3003914071748829338 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #3003914071748829338; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 362; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 869 639; setLocation 689 96; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #3003914071748829338 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 017b9be8a30e22; toggleUseWeights off; endTell; setAssignedID 3004.1630408322151.2202774340862792856; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 869 639; setLocation 689 96; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; setSelectedTaxonHighlightMode 1; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; setTaxonNameStyler #mesquite.trees.NoColorForTaxon.NoColorForTaxon; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(1:0.2405913,(((2:0.001361002,3:0.006448928):0.003442709,(4:0.001393821,5:0.0006246304):0.0168785):0.03768814,(6:0.05391781,(7:0.01990024,(8:0.02661618,(9:0.009263056,10:0.02227713):0.01022584):0.01339806):0.03040962):0.1097554):0.019183,(((11:0.007153666,12:0.001610612):0.003701858,(13:0.003589658,14:0.003666573,15:0.0004512327):0.00218387,(16:0.004467696,(17:0.001038753,18:0.002178427,19:0.0006722959):0.002239458):0.004259103):0.024375,(20:0.009011593,((21:0.001271957,22:0.001701775):0.00266698,((23:0.001271978,24:0.001443385):0.01027989,((25:0.0171045,(26:0.002194967,27:0.0008888057):0.004618341):0.001997373,((28:0.001251775,29:0.001043126):0.0055094,(30:0.0007907655,31:0.00108788,32:0.0007874949,33:0.0009140431,34:0.0009182152,35:0.0007025237):0.003370531):0.002975693):0.01926428):0.003183938):0.004244444):0.02674904):0.02550813);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8795386097760582625 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 869 639; setLocation 689 96; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleColorOnlyTaxonNames off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;