#NEXUS [ Title ] begin taxa; dimensions ntax=28; taxlabels Phyllosticta_capitalensis_CBS128856 Phyllosticta_paracapitalensis_CBS141353 Phyllosticta_citriasiana_CBS120486 Phyllosticta_paracitricarpa_CBS141357 Phyllosticta_citricarpa_CBS127454 Phyllosticta_citribraziliensis_CBS100098 Phyllosticta_citrichinaensis_CBS130529 Phyllosticta_rubella_CBS111635 Botryosphaeria_dothidea Botryosphaeria_kuwatsukai_CBS135219 Neoscytalidium_dimidiatum_UM880 Macrophomina_phaseolina_MS6 Neofusicoccum_cordaticola_CBS123634 Neofusicoccum_kwambonambiense_CBS123639 Neofusicoccum_umdonicola_CBS123644 Neofusicoccum_parvum_UCRNP2 Neofusicoccum_ribis_CBS115475 Diplodia_corticola_CBS112549 Diplodia_sapinea_CBS138184 Diplodia_seriata_DS831 Diplodia_scrobiculata_CBS139796 Lasiodiplodia_gonubiensis_CBS115812 Lasiodiplodia_pseudotheobromae_CBS116459 Lasiodiplodia_theobromae_CBS_164_96 Melanops_tulasnei_CBS116805 Aplosporella_prunicola_CBS121167 Coniosporium_apollinis_CBS100218 Saccharata_proteae_CBS121410 ; end; begin characters; dimensions nchar=378; format missing=? gap=- matchchar=. datatype=nucleotide; matrix Phyllosticta_capitalensis_CBS128856 ----------------------cagtcgcctcaca----ttttctttgagcgca------ ---------------gggcggatcgctcgtcgcgccacctggtgc--------cgc---- -ctcgcctgaggggc-attttttgggtggtgggg-tcggg--cgctacgctaagctgctt tggcgccttcgccaacatggcccaaagcagcc---------------------------- -------------------ctgcgcg-------------------------tcacttcat ttgcgtcgca---caacattttgctaacgccctc----cca-ggaagccgccga------ ------------------ Phyllosticta_paracapitalensis_CBS141353 ---------------------tcagtcgcctcaca----ttttctttgagcgca------ ---------------gggcgggtcgctcgtcgcgccacctggtgc--------cgc---- -ctcgcctgaggggc-attttttgggtggtgggg-tcggg--cgctacgctaagctgctt tggcgccttcgccaacatggcccaaagcagcc---------------------------- -------------------ctgcgcg-------------------------tcacttcac ttatgttgca---caacattttgctaacgccctc----cca-ggaagccgccgagctcgg ------------------ Phyllosticta_citriasiana_CBS120486 -catcgagaagttcgagaaggtcagttgcctctca----ctttctttgagcgca------ ------------gggcggcggctcgctcgttgcgccaccactgggc-------cca---- -ctcgctcgaggggc-attttt----tggtgggg-tcgg----gctgcgctaggctgctt tggcgc--tcggttacatgacccgatgcagca-------------------------ttt tttgcgcccgaccgacactctgctcacc-----------------------tcacctcgg tcgcatcgcagcgaaaaattccgctaacgccctc----gca-ggaagccgctgagctcgg taagggtcccttcaagta Phyllosticta_paracitricarpa_CBS141357 ---------------------tcagttgcctcaca----ctttctttgagcgca------ ------------gggcggcggctcgctcgttgcgccaccactgggc-------cca---- -ctcgctcgaggggc-attttc----tggtgggg-tcgg----gctgcgctaagctgctt tggcgc--tcggttacatgacccgatgcagca-------------------------ttt tttgcgcccgaccgacactccgctcacc-----------------------tcacctcgg tcgcatcgcaacgaaaaatttcgctaacgccctc----gca-ggaagccgctgagctcgg ------------------ Phyllosticta_citricarpa_CBS127454 ----------------------cagttgcctcaca----ctttctttgagcgca------ ------------gggcggcggctcgctcgttgcgcctccacttgggc------cca---- -ctcgctcgaggggc-attttc----tggtgggg-tcgg----gctgcgctaagctgctt tggcgc--tcggttatatgacccgatgcagcat------------------------ttt tttgcgcccgaccgacactctgctcacc-----------------------tcacctcgg tcgcatcgcaacgaaaaatttcgctaacgccctc----gca-ggaagccgctgagctcgg ------------------ Phyllosticta_citribraziliensis_CBS100098 -catcgagaagttcgagaaggtcagttgcctcacc----ttttctttgagtgagc----- ------------ccagggcggctcgctcgtcgcgccaccactcgcccact---cgc---- -ctcgcccgaggggc-attttt----tggtgggg-tcgg----gttgcgctaggctgctt tggcgc--tcggttacatggcccgatgcagca--------------------------tt tttgcgcccgaccgtcgccctgctcacc-----------------------tcacctcgg tcgcatcgcaatgcaacattctgctaacgccctc----gca-ggaagccgccgagctcgg taagggttccttcaagta Phyllosticta_citrichinaensis_CBS130529 -catcgagaagttcgagaaggacagttgcctcacc----ttttctttgagtgagc----- ------------gcagggcggctcgctcgtcgcaccaccactcgcccact---cgc---- -ttcgcccgaggggc-tttttt----tggtgggg-tcgg----gttgcgctagcctgctt tggcgc--tcggttacatggcccgatgcagca--------------------------tt tt--------------------ctcacc-----------------------tcgcctcgg tcgcattgcaacgcaacacactgctaacgccctc----gca-ggaagccgccgagctcgg taagggttccttcaagta Phyllosticta_rubella_CBS111635 ----------------------cagtcgcctcaca----ttttctttgagcgca------ ---------------gggcggccagctcgtcgcgccaccttttgc--------cgt---- -ctcgctccatggccatttttt----tggtgggg-tcgg----gctgcgctaggctgctt tggcgcattcggcaatatcgcccgaagcagca--------------------------tt tttgcgcccgacggtcgccctgcgcac------------------------tcacttcac atcaatcg-----caacattctgctaacgccctc----gta-ggaagccgc--------- ------------------ Botryosphaeria_dothidea -catcgagaagttcgagaaggtaagcacacatttt----ctgtgcctgcacgt------- -------------------gtgctgggttcctgcgccgaatttgccttat---cac---- -tctggtgaggggca-atttct----tggtgggg-ctgg----cccgcgctaagcctcgt ttggtc-ttcggcaaaatctccgcatctggat--------------------------tt tttgtgaccggcgtgcgaccgacgcgaa-cacccctcaccaacgc---ttccagccactc acgttcgtctatgcgaccatatgctaaccaccgccacaaca-ggaagccgctgagctcgg caagggttccttcaagta Botryosphaeria_kuwatsukai_CBS135219 ------------------------------------------------------------ -------------------------ggttcctgcgccgaatttgccttatc-cctc---- -tctggtgaggggca-atttct----tggtgggg-ctgg----cccgcgctaagcctcgt ttggtc-ttcggcaaaatctccgcatctggat--------------------------tt tttgtgaccggcgtgcgaccgacgcgaa-cacccctcaccaacgc---ttccagccactc acgtccgtctgtgcgaccatatgctaaccaccgccaca---------------------- ------------------ Neoscytalidium_dimidiatum_UM880 -catcgagaagttcgagaaggtaagcaaacttttttccgccaccactgcacgt------- -------------------gtgctgggttcctgcgccgaatttgccttat---cgc---- -ttgggtgaggggca-ttttgg----tggtgggg-ttgg----cccgcgctaggcctcgt tcggtc-ttcggcaaaatctccgcatcaggat--------------------------tt tttgcgaccggcgtgcgaccgacacgcg---cctcctagcgtcgc---ttgcagccactc acgtccgcccgcgcgatcagatgctaaccgccaccataaca-ggaagccgctgaactcgg caagggttccttcaagta Macrophomina_phaseolina_MS6 -catcgagaagttcgagaaggtaaacacacttttc----gcactcctgcacat------- -------------------gaggctgtcgctgcaccagaatttgccgtat---ctc---- -attgactgaggggc-attttt----tggtgggg-ttgg----tccgcgctaagccgcat tcagcc-ttcggcaaaatctccgcatgtggatt------------------------ttt ttttcgaccggcgtgcgaccgatgcgcg-agcccctccaca-------tttttgccactc gtgttcttctctgcgagcataagctaactgcggctattata-ggaagccgctgagctcgg caagggttccttcaagta Neofusicoccum_cordaticola_CBS123634 ------------tcgagaaggtaagaaagtttttc----cttccgctgcacgc------- -------gctgggtgctgggtgctgggctcccgcactcaatttgccttat---cgc---- -ttcggtgaggggca-ttttgg----tggtgggg-ttgg----cccgcgctaagcctcgt tcgggc--tcggcaaaatgtccgcatctggtt--------------------------tt tttgcgaccggcgtgcgaccgaagcgcg---cccctcgccagaca--------------c cgccacgcatgtgcgaccagacgctaacggccatc---cca-ggaagccgccgagctcgg caagggttc--------- Neofusicoccum_kwambonambiense_CBS123639 -catcgagaagttcgagaaggtaagaaagtttttc----cttccgctgcacgc------- -------gctgggtgctgggtgctgggttcccgcactcaatttgccttat---cgc---- -ttcggtgaggggca-ttttgg----tggtgggg-ttgg----cccgcgctaagcctcgt tcgggc--tcggcaaaatgtccgcatctggtt--------------------------tt tttgcgaccggcgtgcgaccgaagcgcg---cccctcgccagaca--------------- cgccacgcatgtgcgaccagacgctaacggccatc---cca-ggaagccgccgagctcgg caagggttccttcaagta Neofusicoccum_umdonicola_CBS123644 -catcgagaagttcgagaaggtaagaaagtttttc----cttccgctgcacgc------- -------gctgggtgctgggtgctgggttcctgcactcaatttgccttat---cgc---- -ttcggtgaggggca-ttttgg----tggtgggg-ttgg----cccgcgctaagcctcgt tcgggc--tcggcaaaatgtccgcatctggtt--------------------------tt tttgcgaccggcgtgcgaccgaagcgcg---cccctcgccagaca--------------- cgccacgcatgtgcgaccagacgctaacggccatc---cca-ggaagccgccgagctcgg caagggttccttcaagta Neofusicoccum_parvum_UCRNP2 -catcgagaagttcgagaaggtaagaaagtttttc----cttccgctgcacgc------- -------gctgggtgccaggtgctgggttcccgcactcaatttgccttat---cgc---- -ttcggtgaggggca-ttttgg----tggtgggg-ttgg----cccgcgctaagcctcgt ttgggc--tcggcaaaatgtccgcatctggtt--------------------------tt tttgcgaccggcgtgcgaccgaagcgcg---cccctcgccagaca--------------- cgccacgcatgtgcgaccagacgctaacggccctc---cca-ggaagccgccgagctcgg caagggttccttcaagta Neofusicoccum_ribis_CBS115475 -catcgagaagttcgagaaggtaagaaagtttttc----cttccgctgcacgcgctgggt gctgggtgctgggtgctgggtgctgggttcccgcactcaatttgccttat---cgc---- -ttcggtgaggggca-ttttgg----tggtgggg-ttgg----cccgcgctaagcctcgt tcgggc--tcggcaaaatgtccgcatctggtt--------------------------tt tttgcgaccggcgtgcgaccgaagcgca---cccctcgccagaca--------------- cgccacgcatgtgcgaccagacgctaacggccatc---cca-ggaagccgccgagctcgg caagggttccttcaagta Diplodia_corticola_CBS112549 -catcgagaagttcgagaaggtaagccgattgttc----tcgctcctgcacgt------- -------------------gtgcggtgctgctgcgcacagcccgtcttatcatcgc---- -gctggtgaggggcattttgcg----tggtggggtttgg----cccgcgctaagcctcgt ctgcgc--tcggcaaactggccgcactcgctt--------------------------tt tttgcgaccggcgtcaggccgacacgcc--cctcactagcgagaaatgccctgaccactc aggtgctctcgtatgaccacaagctaacgcacgccactaca-ggaagccgctgagctcgg taagggttccttcaagta Diplodia_sapinea_CBS138184 ------------------------------------------------------------ ------------------------------------------caccttat---cgc---- --tcggtgaggggcatttttcg----tggtgggggttgg----cccgcgctaaacctcgt ctgagc--tcggcaaactggccgcacttggt---------------------------tt tttgcgaccggcgtcaggccgatgcgcc--cctcactagcgagcaatgccccgaccactc atgtgctctcgtgcgaccacaggctaacgcacgccacaaca-ggaagccgccgagctcgg caaggg------------ Diplodia_seriata_DS831 -catcgagaagttcgagaaggtaagaggatttttc----ctgctcccgcaccg------- -------------------------------cgtgcacagcccaccttat---cgc---- --tcggtgaggggcatttttcg----tggtggggtttgg----cccgcgctaaacctcgt ctgagc--tcggcaaactggccgcacttggt---------------------------tt tttgcgaccggcgtcaggccgatgcgcc--cctcactagcgagcaatgccccgaccactc atgtgctctcgtacgaccacaggctaacgcacgccacaaca-ggaagccgccgagctcgg caagggttccttcaagta Diplodia_scrobiculata_CBS139796 ------------------------------------------------------------ ------------------------------------------caccttat---cgc---- --tcggtgaggggcatttttcg----tggtggggtttgg----cccgcgctaaacctcgt ctgagc--tcggcaaactggccgcacttggg---------------------------tt tttgcgaccggcggcaggccgatgcgcc--cctcactagcgagcaacgccccgaccactc atgtgctctcgtgcgaccacaggctaacgcacgccacaaca-ggaagccgccgagctcgg taaggg------------ Lasiodiplodia_gonubiensis_CBS115812 -catcgaaaagttcgaaaaggtcagtactcaaatt----ttgccc--------------- -------------------ggccagcgctgcggcgcacagtccggcttct---cgc---- -tctaatgaggggcatttttcg----tggtggggtttgg----cccgcgct-aagctcgt ctgggt--tcggcaaaatcaccgcacttggtt--------------------------tt tttgcgaccggcgtctggccgatgcgcc-tccccactagcgaagaatgccccgaccactc atgtaccgtcgtatgatcacaggctaacgcgcgccattaca-ggaagccgctgagctcgg caagggttccttcaagta Lasiodiplodia_pseudotheobromae_CBS116459 -catcgaaaaattcgagaagttcgtgatttccccc----cctccc---------aa---- -------ccccgcttggctctgtagcgctgcggcgcacagtccgccttat---cgc---- -tctggtgaggggcatttttcg----tggtggggtttgg----cccgcgct-agcctcgt ctgggt--tcggcaaaatgaccgcacttggtt--------------------------tt tttgcgaccggcgtctggccgacgcgcc-tccccactagcgaaaaatgctctggccactc atgtaccgtcgtacgagcaaaggctaacacgccccactacagggaagccgctgagctcgg caagggttccttcaagta Lasiodiplodia_theobromae_CBS_164_96 ccattgagaagttcgagaaggtccgtgcacgcatg----tcgttttttaacccctc---- -------tcgacttcggcgctgcagcgctgcggcgcacagtccgccttat---cgc---- -tctggtgaggggcatttttcg----tggtggggtttgg----cccgcgct-agcctcgt ctgggt--tcggcaaaatgaccgcacttggtt--------------------------tt tttgcgaccggcgtctggccgacgcgcc-tccccactagcgaaaaatgctctgaccactc atgtaccgtcgtacgagcaaaggctaacgcgccccactaca-ggaagccgctgagctcgg caagggttccttcaagta Melanops_tulasnei_CBS116805 -catcgagaagttcgagaaggtgagtggc----------gcgcccttgagcacgc----- -------------------------tctttctgccctcggtccattttgcc--cgtc--- gcacgaggaggggca--ttt-gt---tggtgggg-tcgc---cttcgcgctaagcctcgg ctggcg-ctcggcaaaaatgcccctttgagat--------------------------tt tttgcgaccgaactcctgccgactcgtg---------------------------caccg accgccgccgcctcaacaccatgctgacgccctct---gca-ggaagccgccgaactcgg taagggttccttcaagta Aplosporella_prunicola_CBS121167 -catcgagaagttcgagaaggtatgca--------------------------------- -----------------------------------------ttgcatttt---------- -tcccatggcggggt-----c-t---tggtgggg-tcgc----ttggcgct-agcctcgt ttggct------------------------------------------------------ ---------------------------------------------------tcgccaaag cccaccaacattttgcgaccgtgctaatagcctc----cca-ggaagccgccgagctcgg caagggttccttcaagta Coniosporium_apollinis_CBS100218 -tattgagaagttcgagaaggtaaggactgcagcc----tctttctt------------- ---------------cgctctctttgccgcttcaaaaaatttcgcatttt---cgcctta tcgcgacgaggggca-----------tggtgggg-ctgagtgtcccgcactatcccgctt ttgg----taggcagaggcacacgacgcatgtaccgaaaacccaaaccatcattggtttc ttcatcatccacatcagtcatgt------catgttttggttctgcctttcttgtcttccg ccatgccgccgttgcaacattgtctaagacctttc---aca-ggaagccgccgagttggg caagggctccttcaagta Saccharata_proteae_CBS121410 ------------------------------------------------------------ --------------------------------------------tttcgc---ctc---- -tcgcaccggagggg-cagt-gt---tggtgggg-tt-----tcgcacgctagtctcatt tcgggg-ctcggcaaaacacc--------------------------------------- ---atgagctctgcccgccccgcgtgcacgccccgacactgcttcatgtcttggtcctct ctctctca---------acgatgctaactcgcc-----aca-ggaagccgccgagctcgg caagggttccttcaagta ; end;