#NEXUS [written Tue Oct 29 15:21:02 EET 2019 by Mesquite version 3.51 (build 898) at dyn231-211.eduroam.net.utu.fi/130.232.231.211] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=45; TAXLABELS Osmundastrum_cinnamomeum Angiopteris_evecta Angiopteris_angustifolia Christensenia_aesculifolia Danaea_sellowiana Eupodium_kaulfussii Ptisana_novoguineensis Marattia_cicutifolia Marattia_laxa Marattiopsis_aganzhenensis Marattiopsis_asiatica Marattiopsis_anglica Marattiopsis_vodrazkae Marattiopsis_patagonica Angiopteris_blackii Qasimia_schyfsmae Qasimia_lanceolata Scolecopteris_minor Scolecopteris_majopsis Scolecopteris_illinoensis Acaulangium_bulbaceum Scolecopteris_latifolia Scolecopteris_mamayi Scolecopteris_antarctica Scolecopteris_globiforma Scolecopteris_calicifolia Scolecopteris_gnoma Eoangiopteris_goodii Eoangiopteris_andrewsii Acitheca_polymorpha Acitheca_adaensis Millaya_tularosana Danaeites_rigida Radstockia_kidstonii Sydneia_manleyi Zhutheca_densata Taiyuanitheca_tetralinea Grandeuryella_renaultii Araiangium_pygmaeum Buritiranopteris_costata Danaeopsis_fecunda Danaeopsis_marantacea Marantoidea_acara Pectinangium_lanceolatum Gemellitheca_saudica ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=77; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4"; CHARSTATELABELS 1 root_pith_sclerified / no yes, 2 continuous_band_of_sclerenchymatous_fibers_in_cortex_of_root / absent present, 3 root_hairs / absent present, 4 root_hair_structure / unicellular multicellular, 5 root_anatomy / diarch polyarch, 6 outer_root_cortex / sclerenchymatous parenchymatous, 7 root_mantle / absent present, 8 stem_symmetry / radial dorsiventral, 9 stem_shape / elongate squat, 10 stem_sclerenchyma / absent present, 11 mature_shoot_stele_type / ectophloic_siphonostele dictyostele, 12 vascular_stele_cycles / monocyclic polycyclic, 13 pneumathodes / absent scattered_all_around_petiole, 14 petiole_stele_number / monostele polystele, 15 xylem_configuration_in_petiole / 'horseshoe-shape variation' polycyclic, 16 pitting_pattern_of_metaxylem / multiseriate_scalariform scalariform, 17 scales / absent present, 18 scale_cells / isodiametric elongate, 19 Peltate_laminar_scales_ / with_centrally_attached_stalks_ strongly_asymmetrical_, 20 mucilage_canals / absent present, 21 'fertile-sterile leaf differentiation' / monomorphic dimorphic, 22 fertile_fronds / almost_without_lamina with_lamina, 23 blade_dissection / once_pinnate twice_pinnate more_than_twice_pinnate, 24 basal_pinnae_more_elaborated / no yes, 25 ultimate_pinnule_size / up_to_1.5_cm '1.5-4 cm' over_4_cm, 26 rachis_wings / absent present, 27 number_of_fronds_produced_at_a_time / multiple typically_only_one, 28 pinnule_attachment / attached_to_midrib_by_entire_base_ attached_to_midrib_by_single_point_, 29 pinnule_base / rounded auriculate cordate acute, 30 pinnule_apices / rounded tapered, 31 fertile_pinnules / not_reflexed reflexed_to_protect_sori, 32 reflexed_margin_completely_envelopes_the_sporangia / no yes, 33 lamina_margins_of_pinnae_or_pinnules_excluding_apex_ / dentate _entire 'lobed (multiple ends of bifurcating vein)' decompound_with_cuneate_segments incised, 34 abaxial_multicellular_hairs / absent present, 35 forking_of_veins_in_fertile_frond / mainly_simple normally_forking_near_the_midrib forking_in_the_lamina irregular, 36 veins / free anastomosing_with_free_included_veinlets anastomosing_without_free_included_veinlets, 37 vein_density / less_than_7_per_cm '9-16 per cm' over_30_per_cm, 38 false_veins / absent present, 39 pulvini / absent present, 40 soft_spines_on_veins / absent present, 41 sutures_at_pinnule_bases / absent present, 42 Stipules / absent present, 43 stomatal_type / anomocytic cyclocytic, 44 stomatal_shape / elliptical circular, 45 stomatal_guard_cells / functional permanently_open, 46 stomatal_complex / surficial_or_slightly_sunken raised, 47 idioblasts_in_abaxial_epidermis / absent present, 48 Laminar_idioblast_groupings / solitary_or_small_clusters_ dense_areas_of_idioblasts_, 49 'laminar tissue expanded between sori/sporangia' / absent present, 50 sporangial_gouping / absent present, 51 sporangial_stalk_width / four_to_six_cell_rows_wide more_than_six_cell_rows, 52 sporangial_development / eusporangiate leptosporangiate, 53 annulus / absent present, 54 shape_of_sporangia / elongate ovoid obovoid globular, 55 sporangial_aperture_development / apertures_develop_longitudinally apertures_develop_apically apertures_develop_vertically, 56 sporangial_aperture_shape / slit pore, 57 sporangial_tips / absent present, 58 sporangial_tip_length / short long, 59 size_of_sporangia / less_than_1_mm over_1_mm, 60 sporangia_dorsal_wall_thickness / '1-2 cells' 3_or_more_cells, 61 indument_borne_on_sporangia / absent present, 62 paraphyses / absent present, 63 sporangial_outer_wall_cells / 'isodiametric, rounded' 'elongate, polygonal', 64 number_of_sporangia_per_synangium / '<6' '6-11' '11-24' up_to_over_30, 65 sporangial_fusion_in_synangia / basally_fused fused_until_opening_in_dehiscence fused_but_opening_as_two_valves completely_fused, 66 synangial_division_between_valves / deeply_cut_ shallowly_cut_, 67 position_of_the_synangia / near_to_margin between_the_margin_and_the_midrib, 68 distribution_of_synangia / single_row two_or_more_rows scattered, 69 symmetry_of_synangia / radial bilateral, 70 receptacle / flat_or_slightly_raised developed_into_a_stalk, 71 tracheids_in_placental_tissue_ / absent present, 72 'sporangia/synangia' / pendant lying_transversely_across_the_lamina, 73 spore_output_per_sporangium / a_few_hundreds one_thousand_or_more, 74 spore_morphology / monolete trilete alete, 75 exine_ornamentation / smooth granular echinate echinate_perispore_on_tubercles_, 76 spore_size / '>40 micrometer' '<40 micrometer', 77 spores_chlorophyllous / no yes ; MATRIX Osmundastrum_cinnamomeum -?100000010000000--010001000-00-102010000000000-000113200-00001--------001001 Angiopteris_evecta 0011110010111111111101102001010-0010111001100111011002000-0101120-00100011110 Angiopteris_angustifolia 0011110010111111111101102001010-0010111001100111011002000-0101120-00100011110 Christensenia_aesculifolia 0011110100101111100101002-01010-103110100111110-011001100-0101013-12001010210 Danaea_sellowiana 1111110101111111100111002001010-101010100110000-111001110-0000133-1(0 1 2)100010210 Eupodium_kaulfussii 0011110010111111111101211111310-001000110110001001100100100100012110111010210 Ptisana_novoguineensis 0011110010111111111101102101010-000010101110001001100100100101022000100010110 Marattia_cicutifolia 0011110010111111111101102101010-00101010011000100110010010010?022010111010210 Marattia_laxa 0011110010111111111101112101010-002011100110001001100100110101022100100010110 Marattiopsis_aganzhenensis ????????????????????011?2??1010-101010?0????????0110010000010??32?0010?00011? Marattiopsis_asiatica ????????????????????011?20?11?0-101011?00???????0110010000010?030-0010?01(0 1)11? Marattiopsis_anglica ????????????????????011?20?10?0-101011?0????????011001000?010?032?0010?0?(0 1)11? Marattiopsis_vodrazkae ????????????????????01??1??1110-001010?0????????0110010010010?11201011?0?011? Marattiopsis_patagonica ????????????????????01??2??1110-001011?0????????0110010010010?03200010?0????? Angiopteris_blackii ????????????????????011?21?1010-001010?00???????011002000-010?120-0010?01111? Qasimia_schyfsmae ????????????????????11(1 2)?(1 2)0?(0 1)200-102021?00?(0 1)0?0??011000000-1???13201010?0?021? Qasimia_lanceolata ?????????????????????1(1 2)?20?1200-10202??00???????011000000-0????3201010?0?010? Scolecopteris_minor 010-11100111?0011??1012?0000-0114000?0000010?0??0110000011011?101-100110?001? Scolecopteris_majopsis 010-11100111?001????012?0000-010100000000010?0??0110000010111?101-100100?100? Scolecopteris_illinoensis 010-11100111?001???1012?0000-0100000?0000010?0??011000001001??101-100110?001? Acaulangium_bulbaceum 010-11100111?001????012?0000-01010000000001?????0110010011010?101-100010?201? Scolecopteris_latifolia 010-11100111?001???1112?0000-011410000000010?0??0110000010101?101-100100?101? Scolecopteris_mamayi 010-11100111?0011??1112?0000-011410010000010?0??0110000010101?101-100110?001? Scolecopteris_antarctica ????????????????????012?0000-011????????????????011000001?111?101-100110?201? Scolecopteris_globiforma ?????????1??????????012?0000-011?000?0000010?0??011000001?111?101-100100?001? Scolecopteris_calicifolia 010-11100111?001???1112?0000-0114100?0000010?0??011000001?10??101-100100?001? Scolecopteris_gnoma 010-11000111?0011??1112?0000-0114000?0000010?0??0110000011001?101-100110?001? Eoangiopteris_goodii ?10-11?00111????????012?0000-010101010000010?0??011000001110??121-101000?100? Eoangiopteris_andrewsii ?10-11?00111????????012?0000-010101010000010?0??011000001000???21-1010000100? Acitheca_polymorpha ?10-11100111?001????01200000-010102020000010?0??0110000011101??01-1000?0?100? Acitheca_adaensis ????????????????????012?0000-011401010?00???????01100000111(0 1)1?101-100010?1?0? Millaya_tularosana ?????????????????????1??0000-00-100010?00???????111000000-1?0?121-101010??10? Danaeites_rigida ?????????????????????1(1 2)?0??0-00-100010?00???????011000000-100?121-1010?0?111? Radstockia_kidstonii ?????????????????????02?0??(0 1)-?--300000?00???????01100???0-0????21-0010?0?100? Sydneia_manleyi ????????????????????102?0??(0 1)-?--301000?00??0?0??011000000-0???121-0010?0?(0 1)01? Zhutheca_densata ?????????????????????12?0??0-00-201020?00???????01100000100????01-110??01001? Taiyuanitheca_tetralinea ????????????????????012?0??0-0101010?0?00???????01100?000-0?0??21-1100?0????? Grandeuryella_renaultii ????????????????????012?0??0-010101010?00???????0110000010000?111-101011?001? Araiangium_pygmaeum ????????????????1???112?0??0-00-1000?0?00???????0110000010001?101-100000?100? Buritiranopteris_costata ?10-11100110?101?????12?0000-0114010(1 2)00000??????011000000-1?0??01-1000?011?1? Danaeopsis_fecunda ????????????????????110?20?1010-101210?00???????001000000-0????--------01100? Danaeopsis_marantacea ????????????????????110?20?1000-101210?00???????001000000-0????--------01100? Marantoidea_acara ????????????????????110?20?(0 1)010-101210?00???????001000000-0????-------?0????? Pectinangium_lanceolatum ????????????????????01(1 2)?20?0-010101010?00???????011000??0-110??0??1010?0?1?0? Gemellitheca_saudica ????????????????1???112?0??0-011101020?00?00?0??011000000-1???101-0010?11(1 2)01? ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 77; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1- 77; END; BEGIN TREES; Title Trees; ID 016e17abfe9f8; LINK Taxa = Taxa; TRANSLATE [0] 1 Osmundastrum_cinnamomeum, [1] 2 Angiopteris_evecta, [2] 3 Angiopteris_angustifolia, [3] 4 Christensenia_aesculifolia, [4] 5 Danaea_sellowiana, [5] 6 Eupodium_kaulfussii, [6] 7 Ptisana_novoguineensis, [7] 8 Marattia_cicutifolia, [8] 9 Marattia_laxa, [9] 10 Marattiopsis_aganzhenensis, [10] 11 Marattiopsis_asiatica, [11] 12 Marattiopsis_anglica, [12] 13 Marattiopsis_vodrazkae, [13] 14 Marattiopsis_patagonica, [14] 15 Angiopteris_blackii, [15] 16 Qasimia_schyfsmae, [16] 17 Qasimia_lanceolata, [17] 18 Scolecopteris_minor, [18] 19 Scolecopteris_majopsis, [19] 20 Scolecopteris_illinoensis, [20] 21 Acaulangium_bulbaceum, [21] 22 Scolecopteris_latifolia, [22] 23 Scolecopteris_mamayi, [23] 24 Scolecopteris_antarctica, [24] 25 Scolecopteris_globiforma, [25] 26 Scolecopteris_calicifolia, [26] 27 Scolecopteris_gnoma, [27] 28 Eoangiopteris_goodii, [28] 29 Eoangiopteris_andrewsii, [29] 30 Acitheca_polymorpha, [30] 31 Acitheca_adaensis, [31] 32 Millaya_tularosana, [32] 33 Danaeites_rigida, [33] 34 Radstockia_kidstonii, [34] 35 Sydneia_manleyi, [35] 36 Zhutheca_densata, [36] 37 Taiyuanitheca_tetralinea, [37] 38 Grandeuryella_renaultii, [38] 39 Araiangium_pygmaeum, [39] 40 Buritiranopteris_costata, [40] 41 Danaeopsis_fecunda, [41] 42 Danaeopsis_marantacea, [42] 43 Marantoidea_acara, [43] 44 Pectinangium_lanceolatum, [44] 45 Gemellitheca_saudica; TREE MrBayes_morpho = (1:0.535304,(34:0.044814,35:0.032825):0.110263,((((((((2:0.009209,3:0.009345):0.038124,15:0.025451):0.105539,((6:0.103347,13:0.057737):0.075299,8:0.016217):0.060638,7:0.037762,9:0.063361):0.06667,14:0.043441):0.073431,(4:0.209617,5:0.132726):0.138284,10:0.033077,11:0.047393,12:0.015356):0.144204,(41:0.016823,42:0.032289,43:0.018894):0.153425):0.194527,(16:0.061559,17:0.032687):0.098578):0.251309,18:0.014806,19:0.025956,20:0.037384,21:0.099622,((22:0.03164,26:0.013306):0.026114,23:0.023506):0.061133,24:0.041259,25:0.025472,27:0.048178,28:0.019697,29:0.0201,30:0.04251,31:0.043244,(32:0.051311,33:0.02725):0.078917,36:0.142741,37:0.080087,38:0.10513,39:0.07423,40:0.061848,44:0.053632,45:0.11964):0.149185); TREE MrBayes_morpho_extant_only = (1:0.951538,5:0.097896,(((((2:0.009339,3:0.009573):0.130594,9:0.053841):0.036105,7:0.035194):0.063535,(6:0.144987,8:0.01152):0.035906):0.250541,4:0.147588):0.130579); TREE MrBayes_cpDNA = (1:0.365033,(5:0.063514,((6:0.001324,8:0.001673):0.016971,7:0.016921):0.003345):0.003492,((2:0.002355,3:0.001813):0.012875,(4:0.040436,9:0.013179):0.001679):0.003369); TREE MrBayes_mtDNA = (1:0.10123,5:0.036056,((2:0.019228,(4:0.012247,9:0.003338):0.001339):0.001525,((6:0.004073,8:0.001902):0.00054,7:0.004501):0.001427):0.003248); TREE MrBayes_cpDNAmtDNAmorpho = (1:0.072699,(((((((2:0.00208,3:0.001319):0.003132,15:0.003056):0.009373,(4:0.028597,9:0.009157):0.001421):0.002755,5:0.049346,(((6:0.002292,8:0.001512):0.004209,13:0.008694):0.009742,7:0.012122):0.002449,10:0.003553,11:0.004752,12:0.001583,14:0.004716):0.025,((41:0.001691,43:0.001988):0.003256,42:0.003027):0.018121):0.0273,16:0.005716,17:0.003132):0.031463,18:0.001498,19:0.002655,20:0.003791,21:0.010166,((22:0.003115,26:0.001254):0.002676,23:0.002473):0.006153,24:0.004273,25:0.002656,27:0.004885,28:0.001961,29:0.002054,30:0.004237,31:0.004477,(32:0.005243,33:0.002781):0.008519,36:0.01426,37:0.008378,38:0.010839,39:0.00744,40:0.005708,44:0.006075,45:0.011804):0.019581,(34:0.004442,35:0.003373):0.011776); TREE MrBayes_cpDNAmtDNAmorpho_extant_only = (1:0.244657,((2:0.002118,3:0.001334):0.011916,(4:0.028689,9:0.009148):0.001429):0.00276,(5:0.053444,((6:0.002503,8:0.001515):0.010241,7:0.012154):0.002445):0.002005); TREE parsimony_morpho_ew = (1,(18,19,20,21,24,25,28,29,38,39,40,44,45,((5,(4,(7,9,10,11,12,14,(2,3,15),(8,(6,13))))),(16,17)),(27,(23,(22,26))),(30,31),(32,33),(34,35),(36,37),(42,(41,43)))); TREE parsimony_morpho_extant_only_ew = (1,(5,(4,(7,9,(2,3),(6,8))))); TREE parsimony_cpDNA_ew = (1,(5,(4,((9,(2,3)),(7,(6,8)))))); TREE parsimony_mtDNA_ew = (1,(5,((2,(4,9)),(7,(6,8))))); TREE parsimony_cpDNAmtDNAmorpho_ew = (1,(18,19,20,21,24,25,28,29,38,39,40,44,45,((5,(4,9,10,11,12,14,(15,(2,3)),(7,(8,(6,13))))),(16,17)),(27,(23,(22,26))),(30,31),(32,33),(34,35),(36,37),(42,(41,43)))); TREE parsimony_cpDNAmtDNAmorpho_extant_only_ew = (1,(5,(((2,3),(4,9)),(7,(6,8))))); TREE parsimony_morpho_k5 = (1,((45,((((5,(4,(10,((15,(2,3)),(7,8,13,(6,9))),(12,(11,14))))),(41,42,43)),(16,17)),((39,(27,((18,24,25,(31,(40,(((19,30),(21,(20,(36,37)))),(44,(28,(29,38))))))),(22,23,26)))),(32,33)))),(34,35))); TREE parsimony_morpho_extant_only_k5 = (1,(5,(4,(7,9,(2,3),(6,8))))); TREE parsimony_cpDNA_k5 = (1,(5,(4,((9,(2,3)),(7,(6,8)))))); TREE parsimony_mtDNA_k5 = (1,(5,((2,(4,9)),(7,(6,8))))); TREE parsimony_cpDNAmtDNAmorpho_k5 = (1,((45,(((((5,(10,(((15,(2,3)),(4,9)),(7,(8,(6,13)))),(12,(11,14)))),(41,42,43)),(16,17)),(32,33)),(39,(27,((18,24,25,(31,(40,(((19,30),(21,(20,(36,37)))),(44,(28,(29,38))))))),(22,23,26)))))),(34,35))); TREE parsimony_cpDNAmtDNAmorpho_extant_only_k5 = (1,(5,(((2,3),(4,9)),(7,(6,8))))); TREE parsimony_morpho_k10 = (1,(((((5,(4,(10,(12,(11,(2,3,15)),(14,(9,(7,(8,(6,13))))))))),(16,17)),(42,(41,43))),(((44,(28,29,(19,30,39,(31,((18,24,25),(27,(23,(22,26)))))),(38,(20,21),(36,37)))),(40,45)),(32,33))),(34,35))); TREE parsimony_morpho_extant_only_k10 = (1,(5,(4,(7,9,(2,3),(6,8))))); TREE parsimony_cpDNA_k10 = (1,(5,(4,((9,(2,3)),(7,(6,8)))))); TREE parsimony_mtDNA_k10 = (1,(5,((2,(4,9)),(7,(6,8))))); TREE parsimony_cpDNAmtDNAmorpho_k10 = (1,((45,(((((5,(10,(((15,(2,3)),(4,(9,14))),(7,(8,(6,13)))),(11,12))),(41,42,43)),(16,17)),(32,33)),((40,(31,((18,24,25),(27,(23,(22,26)))))),(44,((38,(((39,(19,30)),(20,21)),(36,37))),(28,29)))))),(34,35))); TREE parsimony_cpDNAmtDNAmorpho_extant_only_k10 = (1,(5,(((2,3),(4,9)),(7,(6,8))))); TREE parsimony_morpho_k15 = (1,(((((5,(4,(10,(12,(11,(2,3,15)),(14,(9,(7,(8,(6,13))))))))),(16,17)),(42,(41,43))),(((44,(28,29,(19,30,39,(31,((18,24,25),(27,(23,(22,26)))))),(38,(20,21),(36,37)))),(40,45)),(32,33))),(34,35))); TREE parsimony_morpho_extant_only_k15 = (1,(5,(4,(7,9,(2,3),(6,8))))); TREE parsimony_cpDNA_k15 = (1,(5,(4,((9,(2,3)),(7,(6,8)))))); TREE parsimony_mtDNA_k15 = (1,(5,((2,(4,9)),(7,(6,8))))); TREE parsimony_cpDNAmtDNAmorpho_k15 = (1,(((39,((((5,(10,(((15,(2,3)),(4,9)),(7,(8,(6,13)))),(12,(11,14)))),(16,17)),(42,(41,43))),((44,((29,(38,((21,(20,((18,(27,(23,(22,26)))),(24,(19,25))))),(36,37)))),(28,(30,31)))),(40,45)))),(32,33)),(34,35))); TREE parsimony_cpDNAmtDNAmorpho_extant_only_k15 = (1,(5,(((2,3),(4,9)),(7,(6,8))))); TREE parsimony_morpho_k20 = (1,(((((5,(4,(10,(12,(11,(2,3,15)),(14,(9,(7,(8,(6,13))))))))),(16,17)),(42,(41,43))),(((44,(((39,(19,(25,(24,((18,(27,(23,(22,26)))),(20,(21,(36,37)))))))),(30,31)),(28,(29,38)))),(40,45)),(32,33))),(34,35))); TREE parsimony_morpho_extant_only_k20 = (1,(5,(4,(7,9,(2,3),(6,8))))); TREE parsimony_cpDNA_k20 = (1,(5,(4,((9,(2,3)),(7,(6,8)))))); TREE parsimony_mtDNA_k20 = (1,(5,((2,(4,9)),(7,(6,8))))); TREE parsimony_cpDNAmtDNAmorpho_k20 = (1,(((39,((((5,(10,(((15,(2,3)),(4,9)),(7,(8,(6,13)))),(12,(11,14)))),(16,17)),(42,(41,43))),((44,((29,(38,((21,(20,((18,(27,(23,(22,26)))),(24,(19,25))))),(36,37)))),(28,(30,31)))),(40,45)))),(32,33)),(34,35))); TREE parsimony_cpDNAmtDNAmorpho_extant_only_k20 = (1,(5,(((2,3),(4,9)),(7,(6,8))))); TREE parsimony_dated_min_age = (((((((45:21,40:1):47,(44:67,(((38:11,((37:1,36:21):42,(((((27:10,((26:1,22:1):1,23:2):1):1,18:4):1,((25:8,19:1):1,24:140):3):1,20:7):1,21:14):1):1):1,29:10):1,((31:6,30:1):1,28:7):11):1):1):1,(((43:1,41:35):1,42:2):26,((17:1,16:10):1,(((((15:1,(3:1,2:1):172):1,(9:1,4:1):173):1,(((13:1,6:71):1,8:72):1,7:73):102):30,(((14:30,11:1):1,12:31):1,10:28):1):1,5:206):56):1):57):1,39:22):1,(33:49,32:1):22):1,(35:1,34:8):16):1,1:324):0.0; TREE parsimony_dated_max_age = (((((((45:40,40:1):29,(44:29,(((38:20,((37:1,36:46):24,(((((27:1,((26:1,22:1):1,23:2):9):1,18:9):1,((25:8,19:1):1,24:137):8):1,20:16):1,21:5):1):1):1,29:18):1,((31:1,30:13):1,28:2):7):1):1):1,(((43:1,41:42):1,42:2):27,((17:1,16:18):1,(((((15:1,(3:1,2:1):176):1,(9:1,4:1):177):1,(((13:1,6:85):1,8:86):1,7:87):92):60,(((14:53,11:1):1,12:61):1,10:37):1):1,5:240):33):1):56):1,39:13):1,(33:49,32:1):23):1,(35:7,34:1):14):1,1:334):0.0; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1572355262856; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5095568576653619095; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1427245189693042103; mqVersion 351; checksumv 0 3 3892651378 null getNumChars 77 numChars 77 getNumTaxa 45 numTaxa 45 short true bits 31 states 31 sumSquaresStatesOnly 9332.0 sumSquares 9332.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 245; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1396 774; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1151 702; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #5095568576653619095 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 016e17abfe9f8; toggleUseWeights off; endTell; setAssignedID 1515.1572355181801.6693759231441782; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1151 702; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow bootstrapFrequency; toggleShow posteriorProbability; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1427245189693042103 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1151 702; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.NoColor.NoColor; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal on; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; endTell; end;