#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=25; TAXLABELS 'Nigrofomes sinomelanoporus Dai_12034_MF629838' 'Nigrofomes sinomelanoporus Cui_5282_MF629837' 'Nigrofomes sinomelanoporus Cui_5277_MF629836' 'Nigrofomes sinomelanoporus Dai_16286_MF629839' Nigrofomes_sinomelanoporus_DMN653054 Nigrofomes_sinomelanoporus_DMN653055 'Nigrofomes melanoporus JV_1504.42_KT156704' 'Nigrofomes melanoporus Vlasak_1704.39_MF629835' 'Nigrofomes melanoporus Vlasak_1607.82_MF629834' Nigrofomes_melanoporus_MN653056 'Trichaptum byssogenum E7361_AJ536654' Trichaptum_biforme_KY346858 'Trichaptum biforme BIOUG24047.A05_KT695319' 'Trichaptum fuscoviolaceum KUC20131001.03_KJ668436' 'Trichaptum abietinum UBCF20347_KC581332' 'Neoantrodiella thujae Dai_5065_KT203293' 'Neoantrodiella gypsea Yuan_5589_KT203292' 'Neoantrodiella gypsea Cui_10372_KT203290' 'Neoantrodiella gypsea Li_1688_KT203291' 'Poriodontia subvinosa Dai_11781_KT203306' 'Poriodontia subvinosa Otto_Miettinen_10493.1_FN907920' 'Oxyporus populinus Otto_Miettinen_10802_FN907910' 'Trichaptum sector RP_63_KP859296' 'Phellinus igniarius Cui_2332_JQ828875' Inonotus_hispidus_AY558602 ; END; BEGIN CHARACTERS; TITLE Nigrofomes; DIMENSIONS NCHAR=720; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Nigrofomes sinomelanoporus Dai_12034_MF629838' GCACGTGCTC-AGCCTACACTCA--ATTCCACTT----AACCCCTGTGCA-CTATTCGGAGTGTGTTGTCTGTATAC-------------------CTTTTCTTACTTCTCTTTCACT-----AGGGAGGTCAA---GGG----------------------------------------GGGGGAAAAGGATGGCATC-TCCGGTTTTCAT-TACAAACCCTTCATTGTGTATTGTAAGAATGTATTACC-TTTTT-TAAGGTGAAATTGAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGG-TATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTTAATCTCAACTTCATTGGCTTTTT---------------------------TGTCAGCGAAGATTGGAGTTTGGAGGTTGCTGCTGGCTTTGT-----------------------TAAAGAGCCGGCTCCTCTTAAATGTCTTAGCTTTGGAAT---CCTTC-TGCGCAATCTTGCGGTGTGATAGTTC-TATTCACTG---CGGATGTTTCAGATTACATAATGGGTTCTGCTTCGAATATATAAA--GTCTTGTTTCTTGAA------------TGAGACAA 'Nigrofomes sinomelanoporus Cui_5282_MF629837' GCACGTGCTC-AGCCTACACTCA--ATTCCACTT----AACCCCTGTGCA-CTATTCGGAGTGTGTTGTCTGTATAC-------------------CTTTTCTTACTTCTCTTTCACT-----AGGGAGGTCAA---GGG----------------------------------------GGGGAAAAAGGATGGCATC-TCCGGTTTTCAT-TACAAACCCTTCATTGTGTATTGTAAGAATGTATTACC-TTTTT-TAAGGTGAAATTGAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGG-TATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTTAATCTCAACTTCATTGGCTTTTT---------------------------TGTCAGCGAAGATTGGAGTTTGGAGGTTGCTGCTGGCTTTGT-----------------------TAAAGAGCCGGCTCCTCTTAAATGTCTTAGCTTTGGAAT---CCTTC-TGCGCAATCTTGCGGTGTGATAGTTC-TATTCACTG---CGGATGTTTCAGATTACATAATGGGTTCTGCTTCGAATATATAAA--GTCTTGTTTCTTGAA------------TGAGACAA 'Nigrofomes sinomelanoporus Cui_5277_MF629836' GCACGTGCTC-AGCCTACACTCA--ATTCCACTT----AACCCCTGTGCA-CTATTCGGAGTGTGTTGTCTGTATAC-------------------CTTTTCTTACTTCTCTTTCACT-----AGGGAGGTCAAG--GGG----------------------------------------GGGGGAAAAGGATGGCATC-TCCGGTTTTCAT-TACAAACCCTTCATTGTGTATTGTAAGAATGTATTACC-TTTTT-TAAGGTGAAATTGAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGG-TATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTTAATCTCAACTTCATTGGCTTTTT---------------------------TGTCAGCGAAGATTGGAGTTTGGAGGTTGCTGCTGGCTTTGT-----------------------TAAAGAGCCGGCTCCTCTTAAATGTCTTAGCTTTGGAAT---CCTTC-TGCGCAATCTTGCGGTGTGATAGTTC-TATTCACTG---CGGATGTTTCAGATTACATAATGGGTTCTGCTTCGAATATATAAA--GTCTTGTTTCTTGAA------------TGAGACAA 'Nigrofomes sinomelanoporus Dai_16286_MF629839' GCACGTGCTC-AGCCTACACTCA--ATTCCACTT----AACCCCTGTGCA-CTATTCGGAGTGTGTTGTCTGTATAC-------------------CTTTTCTTACTTCTCTTTCACT-----AGGGAGGTCAA----GG----------------------------------------GGGGGAAAAGGATGGCATC-TCCGGTTTTCAT-TACAAACCCTTCATTGTGTATTGTAAGAATGTATTACC-TTTTT-TAAGGTGAAATTGAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGG-TATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTTAATCTCAACTTCATTGGCTTTTT---------------------------TGTCAGCGAAGATTGGAGTTTGGAGGTTGCTGCTGGCTTTGT-----------------------TAAAGAGCCGGCTCCTCTTAAATGTCTTAGCTTTGGAAT---CCTTC-TGCGCAATCTTGCGGTGTGATAGTTC-TATTCACTG---CGGATGTTTCAGATTACATAATGGGTTCTGCTTCGAATATATAAA--GTCTTGTTTCTTGAA------------TGAGACAA Nigrofomes_sinomelanoporus_DMN653054 GCACGTGCTC-AGCCTACACTCA--ATTCCACTT----AACCCCTGTGCA-CTATTCGGAGTGTGTTGTCTGTGTAT----------------AC-CTTTTCTTACTTCTCTTTCACT-----AGGGAGGTCGTGT-GAG----------------------------------------AAGGGGAAAGGATGGCATC-TCCGGTTTTCAT-TACAAACTCTTCATTGTGTATTGT-AGAATGTATTACC-TTTTT-TAAGGTGAAATTGAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGG-TATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTTAATCTCAACTCCATTGGCTTTTT--------------------------TTGTCAGTGGAGATTGGAATTGGGGGGTTTCTGCTGGCTTTGT-----------------------TAAAAGGCCGGCTCCTCTTAAATGTCTTAGCTTTGGAAT---CCTTC-TGCGCAATCTTGCGGTGTGATAGTTC-TATTCACTG---CGGATGTTTCAGATTACATAATGGGTTCCGCTTCGAATATATAAAGTCCCTCGTTTCTTGTAAATG--------AGAGACAA Nigrofomes_sinomelanoporus_DMN653055 GCACGTGCTC-AGCCTACACTCA--ATTCCACTT----AACCCCTGTGCA-CTATTCGGAGTGTGTTGTCTGTGTAT----------------AC-CTTTTCTTACTTCTCTTTCACT-----AGGGAGGTCGTGT-GAG----------------------------------------AAGGGGAAAGGATGGCATC-TCCGGTTTTCAT-TACAAACTCTTCATTGTGTATTGT-AGAATGTATTACCTTTTTT-TAAGGTGAAATTGAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGG-TATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTTAATCTCAACTCCATTGGCTTTTT--------------------------TTGTCAGTGGAGATTGGAATTGGGGGGTTTCTGCTGGCTTTGT-----------------------TAAAAGGCCGGCTCCTCTTAAATGTCTTAGCTTTGGAAT---CCTTC-TGCGCAATCTTGCGGTGTGATAGTTC-TATTCACTG---CGGATGTTTCAGATTACATAATGGGTTCCGCTTCGAATATATAAAGTCCCTCGTTTCTTGTAAATG--------AGAGACAA 'Nigrofomes melanoporus JV_1504.42_KT156704' GCATGTGCTC-AGCTCGCGCTCA--ATTCCACTT----AACCCCTGTGCA-CTATTCGGAGTGTGTTGTCTGTATAC----------------CT-TTTTCTTTACTTCTCTTCTATTGAA--GGGAGGGTCATGCGAAG----------------------------------------GGGGGTAAAGGATGCCATC-TCCGGTTATCAT-TACAAACTCTTCATTGTGTATTGT-AGAATGTATTACC-TTTTTAAAAGGTGAAATTGAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGG-TATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTTAATCTCAACTTCATTGGCTTTTT---------------------------TTGTCAGTGAAATTGGAATTGGAGGTTTGCTGCTGGCTTTGC---------------------TATAAAGAGCCGGCTCCTCTCAAATGTATTAGC-TTGGAAT---CTTTC-TACGCAATCTTGCGGTGTGATAGTTC-TATTCACTG---CAGATGT----------ATAATGGGTTCCGCTTCGAATA--------GTCTTGTT-------------------TAAGACAA 'Nigrofomes melanoporus Vlasak_1704.39_MF629835' GCATGTGCTC-AGCTCGCGCTCA--ATTCCACTT----AACCCCTGTGCA-CTATTCGGAGTGTGTTGTCTGTATAC----------------CT-TTTTCTTTACTTCTCTTCTATTGAA--GGGAGGGTCATGCGAAG----------------------------------------GGGGGGAAAGGATGGCATC-TCCGGTTATCAT-TACAAACTCTTCATTGTGTATTGT-AGAATGTATTACC-TTTTTAAAAGGTGAAATTGAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGG-TATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTTAATCTCAACTTCATTGGCTTTTT---------------------------TTGTCAGTGAAATTGGAATTGGAGGTTTGCTGCTGGCTTTGC---------------------TATAAAGAGCCGGCTCCTCTCAAATGTATTAGC-TTGGAAT---CTTTC-TACGCAATCTTGCGGTGTGATAGTTC-TATTCACTG---CAGATGT----------ATAATGGGTTCCGCTTCGAATA--------GTCTTGTT-------------------TAAGACAA 'Nigrofomes melanoporus Vlasak_1607.82_MF629834' GCATGTGCTC-AGCTCGCGCTCA--ATTCCACTT----AACCCCTGTGCA-CTATTCGGAGTGTGTTGTCTGTATAC----------------CT-TTTTCTTTACTTCTCTTCTATTGAA--GGGAGGGTCATGCGAAG----------------------------------------GGGGGGAAAGGATGGCATC-TCCGGTTATCAT-TACAAACTCTTCATTGTGTATTGT-AGAATGTATTACC-TTTTTAAAAGGTGAAATTGAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGG-TATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTTAATCTCAACTTCATTGGCTTTTT---------------------------TTGTCAGTGAAATTGGAATTGGAGGTTTGCTGCTGGCTTTGC---------------------TATAAAGAACCGGCTCCTCTCAAATGTATTAGC-TTGGAAT---CTTTC-TACGCAATCTTGCGGTGTGATAGTTC-TATTCACTG---CAGATGT----------ATAATGGGTTCCGCTTCGAATA--------GTCTTGTT-------------------TAAGACAA Nigrofomes_melanoporus_MN653056 GCATGTGCTC-AGCTCGCGCTCA--ATTCCACTT----AACCCCTGTGCA-CTATTCGGAGTGTGTTGTCTGTATAC----------------CTCTTTTCTTTACTTCCCTTCTATTGAA--GGGAGGGTCATGCGAAG----------------------------------------GGGGGGAAAGGATGGCATC-TCCGGTTATCAT-TACAAACTCTTCATTGTGTATTGT-AGAATGTATTACC-TTTTTAAAAGGTGAAATTGAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGG-TATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTTAATCTCAACTTCATTGGCTTTTT---------------------------TTGTCAGTGAAATTGGAATTGGAGGTTTGCTGCTGGCTTTGC-----------------------TAAAGAGCCGGCTCCTCTCAAATGTATTAGC-TTGGAAT---CTTTC-TACGCAATCTTGCGGTGTGATAGTTC-TATTCACTG---CAGATGT----------ATAATGGGTTCCGCTTCGAATA--------GTCTTGTT-------------------TAAGACAA 'Trichaptum byssogenum E7361_AJ536654' GCATGTGCTC-AGCCC-CGCTCC-AAATCCACTC----AACCCCTGTGCA-CTATTCGGAGTTTGGATTAGGGTGGC----------------TG-GCATGTTTGGTCCCGATTTGGTTC----------GAGRCTAAAA----------------------------------------AGGCTAACCGTACCCTAAC-TCTCCGTCCATT-TACAAACGCTTCATTGTGTCTTGT-CGAATGTCTTAGC-CGT---TTAGGCGAATTTAAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGG-TATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTTAATCTCAACCTCCCCGGCTTTTT-------------------------TGCTTTGGGGGGCGTTGGACTTGGAGGTCTTGTGCTGGC----------------------------TGCAAAGTCGGCTCCTCTTGAATGCATTAGC-TTGGAC-----CT---TCTTCGTGTCTGCGGTGTGATAGTTC-TATTCACCT---CGGGCTCGTARGAAAT-------TGGTCTGCTTCGAATC--------GTCTT----------------------CGGACAAT Trichaptum_biforme_KY346858 CACTGTGCTC-AGCCC-CGCTCC--AATCCATTC----AACCCCTGTGCA-CTATTCGGAGTGTTGCAAGCTGAGACA-------ATGTGGGGAG-TGGTCCCGGTTGTATTTCTAATGCGACTTGGGATTACTTTCAAA--------------------------------------------CGGTCAAGGCTTGTC-CTCCGGTTTATATTACAAACAC-TTTTATTGTCTTGT-CGAATGTATTAGC-CTCTCGTTAGGCGAAACTTAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGCTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTTAATATCAACTCTGATGGTTTTTG-------------------------TTAACCATTGGATGTTGGACTTGGAGGT-TCGTGCTGGC----------------------------TGCAAAGTCGGCTCCTCTTGAATGCATTAGC-TTGGAC-----CTGTGCGCGTTTGCTAGCGGTGTAATACATTTTATTCACCA---CGGGCCGTGTCACTATT-----AGGGTCTGCTTCTAATC--------GTCCTTAC-------------------CGGACAAT 'Trichaptum biforme BIOUG24047.A05_KT695319' CACTGTGCTC-AGCCC-CGCTCC--AATCCATTC----AACCCCTGTGCA-CTATTCGGAGTGTTGCAAGCTGAGACA-------ATGTGGGGAG-TGGTCCCGGTTGTATTTCTA?TGCGACTTGGGCTTACTTTCAAA--------------------------------------------CGGTCAAGGCTTGTC-CTCCGGTTTATATTACAAACAC-TTTTATTGTCTTGT-CGAATGTATTAGC-CTCTCGTTAGGCGAAACTTAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGCTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTTAATATCAACTCTGATGGTTTTTG-------------------------TTAACCATTGGATGTTGGACTTGGAGGT-TCGTGCTGGC----------------------------TGCAAAGTCGGCTCCTCTTGAATGCATTAGC-TTGGAC-----CTGTGCGCGTTTGCTAGCGGTGTAATACATTTTATTCACCA---CGGGCCGTGTCACTATTA----AGGGTCTGCTTCTAATC--------GTCCTTAC-------------------CGGACAAT 'Trichaptum fuscoviolaceum KUC20131001.03_KJ668436' GCATGTGCTC-AGCCC-CGCTCC--AATCTACTT----AACCCCTGTGCA-CTATACGGAGTGTCGCAAGTTGAGAC---------TTGAATTAG-AGGCCTTAGTCGCATTTGTAATGTGGCTGGGTGTCTATCTAAGT--------------------------------------------CGGTCAAGGCTTGTC-CTCCGGTCTATA-TACAAACTC-TTATAATGTCTTGT-AGAATGTGTCAGC-CTCTTGTTAGGCGAAACTCAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGG-TATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTTAATATCAACCCCGTCGGTTTGTTAAT----------------------CAGACCGTTGGGTGTTGGACTTGGAGGT-TCTTGCTGGC----------------------------TGCAAAGTCGGCTCCCCTTGAATGCATTAGC-TTGGGC-----CTGT-TGTGCGTGCTCGCGGTGTAATAAGTTTTATTCATCGTTTTGGGTCGTACACCTATT------GGGCTTGCTTCTAACT--------GTCTT----------------------CGGACAAA 'Trichaptum abietinum UBCF20347_KC581332' GCATGTGCTC-AGCCT-CGCTCT--AATCCACTT----AACCCCTGTGCA-CTATTCGGAGTGTTGCAAGCTGAGAC------------TTGAAT-AGGTCTTGGTCGCGTTTCTAATGCGGCTG-----CGTTCTAARA--------------------------------------------CAGTCAAGGCTTGTC-CTCCGGTCTATA-TACAAACTC-TTATAATGTCTTGT-AGAATGTGTTAGC-CTCTCGTTAGGCGAAACTTAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGG-TATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTTAATATCAACCCCGTCGGTTTGTAAAT----------------------CAGACCGTTGGGTGTTGGACTTGGAGGT-TCTTGCTGGC----------------------------TGCAAAGTCGGCTCCTCTTGAATGCATTAGC-TTGGGC-----CTGT-TGTGCGTGCTCGCGGTGTAATAAGTTTTATTCATCG-TTTGGGTCGTACACTTATT------GGGCTTGCTTCTAACT--------GTCTT----------------------CGGACAAA 'Neoantrodiella thujae Dai_5065_KT203293' GCATGTGCTC-AGCCC-CGCTC----ATCCACTC----AACCCCTGTGCA-CTTCGTCGGAGTCAATGGGCCGCTTT-------------------TGGGGCTTTTGGC-TTT----------------------------------------------------------------------------------------GACTTATCCAT-TACAAACGC-TTTACTTGTCATGT-AGAATGTAAT-GC-CTCTTGTTGGGCGAAATTA-AATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGG-CATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTTAATCTCAATCCCTTGGGTTTGTT-------------------------ATGAACTCTTGAGATTGGACTTGGAGG--TACTGCTGGC----------------------------TTCACCGTCGGCTCCTCTTGAATGTATTAGC-TGGGCC-----TTTA-GCCTCGCGCTCGTGGTGTGATAGTT--TATTCACCT---TGAGTGTGGC------------------------------------------------------------------------ 'Neoantrodiella gypsea Yuan_5589_KT203292' GCATGTGCTC-AGCCC-CGCTC----ATCCACTC----AACCCCTGTGCA-CTTCGTCGGAGTCAATGGGTCGCTCT-------------------TGCGGCTTTTGGC-TTT----------------------------------------------------------------------------------------GACTTATCATT-TACAAACGCTTTTACTTGTCTTGT-AGAATGTAAT-GC-CTCTTGTTGGGCGAAATTA-AATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGG-CATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTTAATCTCAATCCCTTGGGTTTGTT-------------------------ATGAACTCTTGAGATTGGACTTGGAGGT-TACTGCTGGC----------------------------TTCACCGTCGGCTCCTCTTGAATGTATTAGC-TGGGCC-----TTTA-A------------------------------------------------------------------------------------------------------------------------ 'Neoantrodiella gypsea Cui_10372_KT203290' GCATGTGCTC-AGCCC-CGCTC----ATCCACTC----CACCCCCGGGGA-CTTCCGCCGAATCCATGGGTCCCTCT-------------------TGGCGCTTTTGGCTTTT----------------------------------------------------------------------------------------AATTTATCATT-TACAAACGC-TTTACTTGTCTTGT-AGAATGTAAT-GC-CTCTTGTTGGGCGAAATTA-AATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGG-CATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTTAATCTCAATCCCTTGGGTTTGTT-------------------------ATGAACTCTTGAGATTGGACTTGGAGGT-TACTGCTGGC----------------------------TTCACCGTTGGCTCCTCTTGAATGTATTAGC-TGGGCC-----TTTA-GCCTCGCGCTCGTGGTGTGATAGTT--TATTCACCT---TGAGTGTGGC------------------------------------------------------------------------ 'Neoantrodiella gypsea Li_1688_KT203291' ---------------------------------C----AACCCCTGTGCA-CTTCGTCGGAGTCAATGGGTCGCTCT-------------------TGCGGCTTTTGGC-TTT----------------------------------------------------------------------------------------GACTTATCATT-TACAAACGC-TTTACTTGTCTTGT-AGAATGTAAT-GC-CTCTTGTTGGGCGAAATTA-AATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGG-CATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTTAATCTCAATCCCTTGGGTTTGTT-------------------------ATGAACTCTTGAGATTGGACTTGGAGGT-TACTGCTGGC----------------------------TTCACCGTCGGCTCCTCTTGAATGTATTAGC-TGGGCC-----TTTA-GCCTCGCGCTCGTGGTGTGATAGTT--TATTCACCT---TGAGTGTGGCTTGTAT-------GGGTCTGCTTCTAATC--------GTCTTAA----------------------AACGAC 'Poriodontia subvinosa Dai_11781_KT203306' ACATGTGCTC-GGCCC-CGCTCT----TCCACTC----AACCCCTGTGCA-CTTTTCAAAGTACGTCGGGTCCTCCG-------------------TAATGGGAGCAGCTCTTTCGA-------------------------------------------------------------------GAGCCGGGATCTGCG-CGTCTTTGCAAC-TATACACTT-TTTAGATGTCTTGT-AGAATGC-TTAGC-CTCTTAGTGGGCAAAATTT-AATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGG-TATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTTAATCTCAATCCCTCTGGCTTTTC--------------------------GGAGCCTCTGAGATTGGACTTGGAGGT---TTGCTGGCCCTTC-----------------------AGGGTTGTTGGCTCCTCTTGAATGTATTAGC-TGGACT-----GTTG-CTCGC---TCCGCGGTGTGATAGGTT-TATTCACCA---CGGGGCTTGCGAAATC-------AGGTCTGCTTCTAACT--------GTCCCTGTG------------------TTGGGACA 'Poriodontia subvinosa Otto_Miettinen_10493.1_FN907920' ACATGTGCTC-GGCCC-CGCTCT----TCCACTC----AACCCCTGTGCA-CTTTTCAAAGTATGTCGGGTCCTCCG-------------------TAATGGGAGCAGCTCTTTCGA-------------------------------------------------------------------GAGCCGGGATCTGCG-CGTCTTTGCAAC-TATACACTT-TTTAGATGTCTTGT-AGAATGC-TTAGC-CTCTTAGTGGGCGAAATTT-AATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGG-TATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTTAATCTCAATCCCTCTGGCTTTTC--------------------------GGAGCCTCTGAGATTGGACTTGGAGGT---TTGCTGGCCCTTC-----------------------AGGGTTGTTGGCTCCTCTTGAATGTATTAGC-TGGACT-----GTTG-CTCGC---TCCGCGGTGTGATAGGTT-TATTCACCA---CGGGGCTTGCGAAATC-------TGGTCTGCTTCTAACT--------GTCCCTGTG------------------TTGGGACA 'Oxyporus populinus Otto_Miettinen_10802_FN907910' GCATGTGCAC-GCCTC--------GCATCCACTTCAACCTCACCTGTGCA-CTTCAGAGGACCTCTT-------------------------------------------------------------------------------------------------------------------------------------CGGTCTTCTTTCACACAAACCA-CATAACGTCATAGT-AGAACGTCTTTGT-TATTAAAC------------AATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGG-TATTCCGAGGAGCATGCCTGTTTGAGTGTCGTGTAATTCTCAATCCCGATCGGTTTTG--------------------------GCCGACTTCGAGATTGGATTTGGGAGTCTGCTGT--GCCTTGC-----------------------ATTAGGTTCGGCTCTCCTTGAATGCATTAGC-TCGGTCACGTAGTTG-CCCGACGGTTCACGGTGTGATAGTTTATCTTCATCG---CCGTTCTGACCGCTCG-------GTGCCTGTGTTYGCCG--------GCTTCTAATACCGTGTC----------TCAGACAC 'Trichaptum sector RP_63_KP859296' GCAAGTGCTCGAGCCCTCGCTCT--TATCCACTT----AACCCCTGTGCACCTATCCGGAGTGTCGCAGACTGGTGT-----------------------------------------------------CGGTTTCGAC--------------------------------------------TGGCTAAGGTCTGTCTCTCTGGTCTGAT-TACAAACGC-TTGTAATGTCTTGT-AGAATGTGTTAGC-CGCAT-ATAGGCTGAATTGTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGCTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTTAATCTCAACCCCGCCGGTTTTGT--------------------------AATCGCGTGGGTGTTGGACTTGGGGGC-TGCTGGTTTGCTT-------------------------ATGTAAGCCGGCTCCTCTTGAATGCATTAGC-TTGGAC-----CTGT-TTCACTTGCGAGTGGTGTAATAATAC-TATTCGCTGCGCGCAAGTGTAAACTCATT-----AGGGTCTGYTTCTAATCT-------GTCTT----------------------AGGACAAA 'Phellinus igniarius Cui_2332_JQ828875' GGATGTGCAC-GGCCCTTGTCCT-CAATCCATTC----AACCCCTGTGCA-CCCTATGGGAGTTACTAGTMGACAGTTAG---------------------------------TTAGTAGTCGAGAGGCGAACACTCGGT--------------------------------------------CGGCGAA---------CACTTCAACTAT-TATCAAC---CTTTGTTGTCATGT-AGAATGTAATG---CTCCTTGTGGGCGAAATGA-AATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGG-TATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTAATCTCAGCTCCCCTTGTTTTTC--------------------------TAACTCGGGCGTGTTGGACTTGGAAGC----TGCTGGCCCCCT-----------------------TCTGTGGTCGGCTCTTCTTAAATGTATTAGT-TGGGCT-----TTGG-CTCGCGT-TGAACGGTGTAATAGTAATCTTACATTC-ACCGGAGCGCTTGCCTGAC------GAGTCTGCTTCTAATC--------GTCCGTGTTTT----------------CGGACAAG Inonotus_hispidus_AY558602 ACATGTGCAC-GGCTTTCGTGCTCAAATCCATTTC--AAACCCCTGTGCA-CTTTTGAACCGGTTGAAGTTAGTAGTGAGTAACACTTTCGACTT-GCGACCTAGTACTGCGAGTAATACTAGTAGGAGGGTCTTTGAGGCTTTCGAACGTTGAAAGCGGGAAACGTTAAGAGAAGAGAGGGTGAAGGCGAGCGCTTTG-ACTAGTTTGTAT-TATAAACCC-TTTTATTGTTATGT--GAATGTAATG---CTCCTTGTGGGCGATAATT-TGTACAACTTTCAACAACGGATCTCTAGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGG-TATTCCGAGGGGCATGCCTGTTTGAGTGTCGTGTTAATCTCAAATCACTTGTCTTTATTATGTTTGCTTCTTGGTTGAAGTAGGCTTGACTTGCGATTTGGACTTGGAGGT-TATTGCTGGCCCGGGCGACGCTTTGTTGTATTGCCCTTTGGTTTGTCGGCTCCTCTTAAATGCATTAGC-TGGACT-----TTGG-TTCGCGT-TTTATGGTGTAATAGTATTGCTATGCTTCACCGGAGCGCTTGCCTAAG------GGGTCTGCTTCTAATC--------GTCCGTGTTACTTTTTTGTAATGTAATAGGACAAG ; END; begin paup; log file = ITS1_P_buffer.txt; pset collapse = minbrlen; set maxtrees = 5000 increase = no; outgroup FN907910; set criterion = parsimony; hsearch addseq = random nreps = 1000; roottrees outroot = monophyl; savetrees brlens = yes file = MP.tre; pscores ALL / ci = yes tl = yes hi = yes rc = yes ri = yes khtest = yes; bootstrap nreps = 1000 Keepall = yes / AddSeq = random nreps = 10; roottrees outroot = monophyl; savetrees file = BT.tre from = 1 to = 1 savebootp = both maxdec = 0; END; BEGIN TREES[!'Parameters: Majority-Rule Consensus of trees from Stored Trees']; Title Nigrofomes_MP; LINK Taxa = Taxa; TRANSLATE [0] 1 'Nigrofomes sinomelanoporus Dai_12034_MF629838', [1] 2 'Nigrofomes sinomelanoporus Cui_5282_MF629837', [2] 3 'Nigrofomes sinomelanoporus Cui_5277_MF629836', [3] 4 'Nigrofomes sinomelanoporus Dai_16286_MF629839', [4] 5 Nigrofomes_sinomelanoporus_DMN653054, [5] 6 Nigrofomes_sinomelanoporus_DMN653055, [6] 7 'Nigrofomes melanoporus JV_1504.42_KT156704', [7] 8 'Nigrofomes melanoporus Vlasak_1704.39_MF629835', [8] 9 'Nigrofomes melanoporus Vlasak_1607.82_MF629834', [9] 10 Nigrofomes_melanoporus_MN653056, [10] 11 'Trichaptum byssogenum E7361_AJ536654', [11] 12 Trichaptum_biforme_KY346858, [12] 13 'Trichaptum biforme BIOUG24047.A05_KT695319', [13] 14 'Trichaptum fuscoviolaceum KUC20131001.03_KJ668436', [14] 15 'Trichaptum abietinum UBCF20347_KC581332', [15] 16 'Neoantrodiella thujae Dai_5065_KT203293', [16] 17 'Neoantrodiella gypsea Yuan_5589_KT203292', [17] 18 'Neoantrodiella gypsea Cui_10372_KT203290', [18] 19 'Neoantrodiella gypsea Li_1688_KT203291', [19] 20 'Poriodontia subvinosa Dai_11781_KT203306', [20] 21 'Poriodontia subvinosa Otto_Miettinen_10493.1_FN907920', [21] 22 'Oxyporus populinus Otto_Miettinen_10802_FN907910', [22] 23 'Trichaptum sector RP_63_KP859296', [23] 24 'Phellinus igniarius Cui_2332_JQ828875', [24] 25 Inonotus_hispidus_AY558602; TREE MajRul = (22:55[%consensusFrequency = 1 ],((20:2,21:1):57.125[%consensusFrequency = 1 ],(18:10.833333333333334,(16:4.833333333333333,(17:1,19:0.0):1[%consensusFrequency = 1 ]):1.9[%consensusFrequency = 0.83333333 ]):35.833333333333336[%consensusFrequency = 1 ],((24:63,25:52):74.29166666666667[%consensusFrequency = 1 ],(11:47.833333333333336,(23:50,((12:0.0,13:1):19.416666666666668[%consensusFrequency = 1 ],(14:16,15:10):26.166666666666668[%consensusFrequency = 1 ]):13[%consensusFrequency = 1 ]):51.04166666666667[%consensusFrequency = 1 ],((7:2,8:0.0,9:1,10:1):19.666666666666668[%consensusFrequency = 1 ],((5:0.0,6:0.0):13.5[%consensusFrequency = 1 ],(1:0.0,2:1,3:0.0,4:0.0):5.25[%consensusFrequency = 1 ]):8.666666666666666[%consensusFrequency = 1 ]):32.083333333333336[%consensusFrequency = 1 ]):10.791666666666666[%consensusFrequency = 1 ]):35.75[%consensusFrequency = 0.66666667 ]):55):0.0[%consensusFrequency = 1 ] [% ] [% setBetweenBits = selected setBetweenDouble = consensusFrequency ]; END;