#NEXUS [written Fri Feb 14 18:29:49 EST 2020 by Mesquite version 3.6 (build 917) at Angies-Mac.local/157.182.250.48] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=20; TAXLABELS Massospora_cicadina_GK2 Massospora_cicadina_MC7 Massospora_cicadina_MC17 Massospora_cicadina_MICH231384 Massospora_levispora_ML2 Massospora_levispora_ML4 Massospora_platypediae_CA3 Massospora_platypediae_NM2 Massospora_platypediae_NM4 Massospora_tettigatis_PL5042 Massospora_tettigatis_PL373 Entomophthora_muscae_ARSEF3074 Arthrophaga_myriapodina_Arsp1 Pandora_formicae_v1 Furia_ithacensis_FiMD2 Pandora_neoaphidis_ARSEF7939 Zoophthora_radicans_voucher45 Massospora_diceroproctae_DB128 Massospora_diceroproctae_DB138 Massospora_diceroproctae_DB176 ; END; BEGIN CHARACTERS; TITLE Massospora_28S_Alignment; DIMENSIONS NCHAR=651; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Massospora_cicadina_GK2 TATACCCAAATTTGACGATCGATTTGCACGTCAGAATCGCTACGGGCTTCCACCAGAGTTTCCTCTGGCTTCACCCTATTCAGGCATAGTTCACCATCTTTCGGGTACCAACATATATGCTCTTACTCAAATCCTGTGAACAAGTCCAC-AAGGTTCGGTTGATAGTGCACC--CTTGCGGGATCCTATC-TGAAATTACTTTCATTGCGCATTAGAGGTTTGACGCCCTTATACTTGCATATATGTTAGACTCCTTGGTCCGTGTTTCAAGACGGGACGCTTAGAAACCTCAAACTATATTTCTTAGCGCTTACCTTTTGACAATTTCACATTCTTTTGAGTCCCCTTTTCAGGGTTCTCTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCTCTACAGTATTTAGCTTTAGAAGGAATTTACCTCCCAATTAATGCTGCATTAACAAGCAACACGACTCTACGGTTATTAGTTCTTTGCAACTTCCTCTCTGTCTAGTACGGGAATTTTACCCTCTATGATGGCGCATTCCAGTGCACTTTGACAGTGGTCGTTGTGAGAC-TAATATCCTTTAAATTACAATTCAC-GTG-AGTGATTTTAAATTT-GAGCCTTTCCCAGTTCATTCGCCATTACTAT-- Massospora_cicadina_MC7 TATACCCAAATTTGACGATCGATTTGCACGTCAGAATCGCTACGGGCTTCCACCAGAGTTTCCTCTGGCTTCACCCTATTCAGGCATAGTTCACCATCTTTCGGGTACCAACATATATGCTCTTACTCAAATCCTGTGAACAAGTCCAC-AAGGTTCGGTTGATAGTGCACC--CTTGCGGGATCCTATC-TGAAATTACTTTCATTGCGCATTAGAGGTTTGACGCCCTTATACTTGCATATATGTTAGACTCCTTGGTCCGTGTTTCAAGACGGGACGCTTAGAAACCTCAAACTATATTTCTTAGCGCTTACCTTTTGACAATTTCACATTCTTTTGAGTCCCCTTTTCAGGGTTCTCTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCTCTACAGTATTTAGCTTTAGAAGGAATTTACCTCCCAATTAATGCTGCATTAACAAGCAACACGACTCTACGGTTATTAGTTCTTTGCAACTTCCTCTCTGTCTAGTACGGGAATTTTACCCTCTATGATGGCGCATTCCAGTGCACTTTGACAGTGGTCGTTGTGAGAC-TAATATCCTTTAAATTACAATTCAC-GTG-AGTGATTTTAAATTT-GAGCCTTTCCCAGTTCATTCGCCATTACTATGG Massospora_cicadina_MC17 TATACCCAAATTTGACGATCGATTTGCACGTCAGAATCGCTACGGGCTTCCACCAGAGTTTCCTCTGGCTTCACCCTATTCAGGCATAGTTCACCATCTTTCGGGTACCAACATATATGCTCTTACTCAAATCCTGTGAACAAGTCCAC-AAGGTTCGGTTGATAGTGCACC--CTTGCGGGATCCTATC-TGAAATTACTTTCATTGCGCATTAGAGGTTTGACGCCCTTATACTTGCATATATGTTAGACTCCTTGGTCCGTGTTTCAAGACGGGACGCTTAGAAACCTCAAACTATATTTCTTAGCGCTTACCTTTTGACAATTTCACATTCTTTTGAGTCCCCTTTTCAGGGTTCTCTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCTCTACAGTATTTAGCTTTAGAAGGAATTTACCTCCCAATTAATGCTGCATTAACAAGCAACACGACTCTACGGTTATTAGTTCTTTGCAACTTCCTCTCTGTCTAGTACGGGAATTTTACCCTCTATGATGGCGCATTCCAGTGCACTTTGACAGTGGTCATTGTGAGAC-TAATATCCTTTAAATTACAATTCAC-GTG-AGTGA-------------------------------------------- Massospora_cicadina_MICH231384 TATACCCAAATTTGACGATCGATTTGCACGTCAGAATCGCTACGGGCTTCCACCAGAGTTTCCTCTGGCTTCACCCTATTCAGGCATAGTTCACCATCTTTCGGGTACCAACATATATGCTCTTACTCAAATCCTGTGAACAAGTCCAC-AAGGTTCGGTTGATAGTGCACC--CTTGCGGGATCCTATC-TGAAATTACTTTCATTGCGCATTAGAGGTTTGACGCCCTTATACTTGCATATATGTTAGACTCCTTGGTCCGTGTTTCAAGACGGGACGCTTAGAAACCTCAAACTATATTTCTTAGCGCTTACCTTTTGACAATTTCACATTCTTTTGAGTCCCCTTTTCAGGGTTCTCTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCTCTACAGTATTTAGCTTTAGAAGGAATTTACCTCCCAATTAATGCTGCATTAACAAGCAACACGACTCTACGGTTATTAGTTCTTTGCAACTTCCTCTCTGTCTAGTACGGGAATTTTACCCTCTATGATGGCGCATTCCAGTGCACTTTGACAGTGGTCATTGTGAGAC-TAATATCCTTTAAATTACAATTCAC-GTG-AGTGATTTTAAATTT-GAGCCTTTCCCAGTTCAT--------------- Massospora_levispora_ML2 TATACCCAAATTTGACGATCGATTTGCACGTCAGAATCGCTACGGGCTTCCACCAGAGTTTCCTCTGGCTTCACCCTATTCAGGCATAGTTCACCATCTTTCGGGTACCAACATATATGCTCTTACTCAAATCCTATGAACAAGTCCAT-AAGGTTTGGTTGATAGTGCACC--CTTGCGGGATCCTACC-TGAAATTACTTTCATTGCGCATTTGGGGTTTAAAGCCCATATACTTGCATATATGTTAGACTCCTTGGTCCGTGTTTCAAGACGGGACGCTTAGAACCCTCTAACTATAGTGCTTAGCGCTTACCTTTTGACGATTTCACATTCTTTTGAGTCCCCTTTTCAGGGTTCTCTTTCATCTTTCCCTTACGGTACTTGTTTGCTATCGGTCTCTCTCTTGTATTTAGCTTTAGAAGGAATTTACCTCCCAATTAATGCTGCATTATCAAGCAACACGACTCTTAGGTTAATAGTACTTTGCAACTTCCGT-CTGTCTAGTACGGGAATTTTACCCTCTAGGATGGCACATTCCAGAGCACTTTGACAGAGGTCATTAC-AGAC-TAATATCCTTTAAACTACAATTCAC-GTG-AGTGATTTTAAATTT-GAGCCTTTCCCAGTTCATTCGCCATTACTACGG Massospora_levispora_ML4 TATACCCAAATTTGACGATCGATTTGCACGTCAGAATCGCTACGGGCTTCCACCAGAGTTTCCTCTGGCTTCACCCTATTCAGGCATAGTTCACCATCTTTCGGGTACCAACATATATGCTCTTACTCAAATCCTATGAACAAGTCCAT-AAGGTTTGGTTGATAGTGCACC--CTTGCGGGATCCTACC-TGAAATTACTTTCATTGCGCATTTGGGGTTTAAAGCCCATATACTTGCATATATGTTAGACTCCTTGGTCCGTGTTTCAAGACGGGACGCTTAGAACCCTCTAACTATAGTGCTTAGCGCTTACCTTTTGACGATTTCACATTCTTTTGAGTCCCCTTTTCAGGGTTCTCTTTCATCTTTCCCTTACGGTACTTGTTTGCTATCGGTCTCTCTCTTGTATTTAGCTTTAGAAGGAATTTACCTCCCAATTAATGCTGCATTATCAAGCAACACGACTCTTAGGTTAATAGTACTTTGCAACTTCCGT-CTGTCTAGTACGGGAATTTTACCCTCTAGGATGGCACATTCCAGAGCACTTTGACAGAGGTCATTAC-AGAC-TAATATCCTTTAAACTACAATTCAC-GTG-AGTGATTTTAAATTT-GAGCCTTTCCCAGTTCATTCGCCATTACTACGG Massospora_platypediae_CA3 TATACCCAAATTTGACGATCGATTTGCACGTCAGAATCGCTACGGGCTTCCACCAGAGTTTCCTCTGGCTTCACCCTATTCAGGCATAGTTCACCATCTTTCGGGTACCAACATATATGCTCTTACTCAAATCCTATGAACAAGTCCAT-AAGGTTTGGTTGATAGTGCACC--CTTGCGGGATCCTACC-TGAAATTACTTTCATTGCGCATTTGGGGTTTAAAGCCCATATACTTGCATATATGTTAGACTCCTTGGTCCGTGTTTCAAGACGGGACGCTTAGAACCCTCTAACTATAGTGCTTAGCGCTTACCTTTTGACGATTTCACATTCTTTTGAGTCCCCTTTTCAGGGTTCTCTTTCATCTTTCCCTTACGGTACTTGTTTGCTATCGGTCTCTCTCTTGTATTTAGCTTTAGAAGGAATTTACCTCCCAATTAATGCTGCATTATCAAGCAACACGACTCTTAGGTTAATAGTACTTTGCAACTTCCGT-CTGTCTAGTACGGGAATTTTACCCTCTAGGATGGCACATTCCAGAGCACTTTGACAGAGGTCATTAC-AGAC-TAATATCCTTTAAACTACAATTCAC-GTG-AGTGATTTTAAATTT-GAGCCTTTCCCAGTTCATTCGCCATTACTACGG Massospora_platypediae_NM2 TATACCCAAATTTGACGATCGATTTGCACGTCAGAATCGCTACGGGCTTCCACCAGAGTTTCCTCTGGCTTCACCCTATTCAGGCATAGTTCACCATCTTTCGGGTACCAACATATATGCTCTTACTCAAATCCTATGAACAAGTCCAT-AAGGTTTGGTTGATAGTGCACC--CTTGCGGGATCCTACC-TGAAATTACTTTCATTGCGCATTTGGGGTTTAAAGCCCATATACTTGCATATATGTTAGACTCCTTGGTCCGTGTTTCAAGACGGGACGCTTAGAACCCTCTAACTATAGTGCTTAGCGCTTACCTTTTGACGATTTCACATTCTTTTGAGTCCCCTTTTCAGGGTTCTCTTTCATCTTTCCCTTACGGTACTTGTTTGCTATCGGTCTCTCTCTTGTATTTAGCTTTAGAAGGAATTTACCTCCCAATTAATGCTGCATTATCAAGCAACACGACTCTTAGGTTAATAGTACTTTGCAACTTCCGT-CTGTCTAGTACGGGAATTTTACCCTCTAGGATGGCACATTCCAGAGCACTTTGACAGAGGTCATTAC-AGAC-TAATATCCTTTAAACTACAATTCAC-GTG-AGTGATTTTAAATTT-GAGCCTTTCCCAGTT------------------ Massospora_platypediae_NM4 TATACCCAAATTTGACGATCGATTTGCACGTCAGAATCGCTACGGGCTTCCACCAGAGTTTCCTCTGGCTTCACCCTATTCAGGCATAGTTCACCATCTTTCGGGTACCAACATATATGCTCTTACTCAAATCCTATGAACAAGTCCAT-AAGGTTTGGTTGATAGTGCACC--CTTGCGGGATCCTACC-TGAAATTACTTTCATTGCGCATTTGGGGTTTAAAGCCCATATACTTGCATATATGTTAGACTCCTTGGTCCGTGTTTCAAGACGGGACGCTTAGAACCCTCTAACTATAGTGCTTAGCGCTTACCTTTTGACGATTTCACATTCTTTTGAGTCCCCTTTTCAGGGTTCTCTTTCATCTTTCCCTTACGGTACTTGTTTGCTATCGGTCTCTCTCTTGTATTTAGCTTTAGAAGGAATTTACCTCCCAATTAATGCTGCATTATCAAGCAACACGACTCTTAGGTTAATAGTACTTTGCAACTTCCGT-CTGTCTAGTACGGGAATTTTACCCTCTAGGATGGCACATTCCAAAGCACTTTGACAGAGGTCATTAC-AGAC-TAATATCCTTTAAACTACAATTCAC-GTG-AGTGATTTTAAATTT-GAGCCTTTCCCAGTTCA---------------- Massospora_tettigatis_PL5042 TATACCCAAATTTGACGATCGATTTGCACGTCAGAATCGCTACGAGCTTCCACCAGAGTTTCCTCTGGCTTCACCCTATTCAGGCATAGTTCACCATCTTTCGGGTACCAACATATATGCTCTTACTCAAATCCTATGAACGAGTCCAT-AAGGTTCGGCTGATAGTGCACC--CTTGCAGGATCCTACC-TGAAATTACTTTCATTGCGCATTTGGGGTTTGAAGCCCTTATACTTGCATATATGTTAGACTCCTTGGTCCGTGTTTCAAGACGGGACGCTTAGAACCCTCTAACTAT-GTTCTTAGCGCTTACCTTTTGACGATTTCACATTCTTTTGAGTCCCCTTTTCAGGGTTCTCTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCTCTCTAGTATTTAGCTTTAGAAGGAATTTACCTCCCAATTTATGCTGCACTATCAAGCAACATGACTCTTAGGTTATAAGTTCTTTGCAACTTCCTTACTGTCTAGTACGGGAATTTTACCCTCTATGATGGCGCATTCCAGAGCACTTTGACAGTGGTTATTGCTAGAC-TAATATCCTTTAAACTACAATTCAC-GTG-AGTGATTTTAAATTT-GAGCCTTTCCCGGTTCATTCGCCATTACTAAGG Massospora_tettigatis_PL373 ------------TGACGATCGATTTGCACGTCAGAATCGCTACGAGCTTCCACCAGAGTTTCCTCTGGCTTCACCCTATTCAGGCATAGTTCACCATCTTTCGGGTACCAACATATATGCTCTTACTCGAATCCTATGAACGAGTCCAT-AAGGTTCGGCTGATAGTGCACC--CTTGCAGGATCCTACC-TGAAATTACTTTCATTGCGCATTTGGGGTTTGAAGCCCTTATACTTGCATATATGTTAGACTCCTTGGTCCGTGTTTCAAGACGGGACGCTTAGAACCCTCTAACTAT-GTTCTTAGCGCTTACCTTTTGACGATTTCACATTCTTTTGAGTCCCCTTTTCAGGGTTCTCTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCTCTCTAGTATTTAGCTTTAGAAGGAATTTACCTCCCAATTTATGCTGCACTATCAAGCAACATGACTCTTAGGTTATAAGTTCTTTGCAACTTCCTTACTGTCTAGTACGGGAATTTTACCCTCTATGATGGCGCATTCCAGAGCACTTTGACAGTGGTTATTGCTAGAC-TAATATCCTTTAAACTACAATTCAC-GTG-AGTGATTTTAAATTT-GAGCCTTTCCCGGTTCATTCGCCATTACTAAGG Entomophthora_muscae_ARSEF3074 TATACCCAAATTCGACGATCGATTTGCACGTCAGAATCGCTACGAGCCTCCACCAGAGTTTCCTCTGGCTTCACCCTATTCAGGCATAGTTCACCATCTTTCGGGTACCAACAAATATGCTCTCACTCAAATCCTATGAACAAGTCCAT-AAGGTTCGGTTGATAGTGCACT--CTTGCGAGATCCTACC-TGAAATTACTTTCATTACGCATCTGAGGTTTGACGCCCATATACTTGCATATTTGTTAGACTCCTTGGTCCGTGTTTCAAGACGGGACGCTTAGAACCTTCTAACTATAATTCTTAGCGCTTACCTTTTGACAATTTCACATTCTTTTGAGTCCCCTTTTCAGGGTTCTCTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCTCTCTTATATTTAGCTTTAGAAGGAATTTACCTCCCAATTAATGCTGCATTAACAAGCAACACGACTCGTAGGATAAAAGTTCTTTGCAGCTTTCTATCTAGTGTATACGGGAATTTCACCCTCCTTGACGATCCATTCCAGAATACTTAACTAGCGATTGCTGTGAGAC-TAATTTCCTTTAAACTACAATTCAC-AAA-AGTGATTTTAAATTT-GAGCCTTTCCCAGTTCATTCGCCATTACTACGG Arthrophaga_myriapodina_Arsp1 TATACCCAAATTCGACGATCGATTTGCACGTCAGAATCGCTACGAGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCTATTCAGGCATAGTTCACCATCTTTCGGGTACCAACATTGTTGCTCTTACTCAAATCCTATGAACGAGTCCAT-AAGGTTCGGTTGATAGTGCACCGT??????GGATCCTACC-TGAAATTACTTTCATTCCGCATTTGGGATTGAATGCCCATATACTTGCATCAATGTTAGACTCCTTGGTCCGTGTTTCAAGACGGGACGCTTAGAACCTCC?AACTACAGTTCTTAGCGCTTACCTTTTGACAATTTCACATTCTTTTGAGTCCCCTTTTCAGGGTTCTCTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCACTCTAATATTTAGCCTTAGAAGGAATTTACCTCCCGATTGATGCTGCATTAACAAGCAACACGACTCTTTGAATAAAAGTTTTTGGCAGCTTCCTATCTGTTGAGTACGGGAATTTCACCCTCTATGATGGTTCATTCCAGAGCACTTGAACAGTGGTCGCTGCTGGAC????AATTCTTTAAACTACAATTCAC-??GAAGTGATTTTAAATTT-GAGCTTTTCCCTGTTCATTCGCCATTACTAAGG Pandora_formicae_v1 ----------------------------CGTCAGAATCGCTACGAGCTTCCACCAGGGTTTCCCCTGGCTTCACCCTATTCAGGCATAGTTCACCATCTTTCGGGTACCAACATATATGCTCTTACTCAAACCAAAGAAAAAAATCCCT-TTAGCTCGGTCGATAGTGCACC--CTTGCGGGATCCTACCTTGAAATTACTTTCATTGTGCATAC-?GGTTTTACACCATAATACTTGCATACATGTTAGACTCCTTGGTCCGTGTTACAAGACGGGTCGCTTAAGCCTTCTTAACTATAGTTTTAAGCGGTTTCCTTATAACAATTTCACTTTCTTTTGAG-???????????GGTTCTCTTTCATCTTTCCCTTAAGGTACTTGTTTGCTATCGGACTCCTACCAGTATTTAGCCTTAGAAGGAATTTACCTCCCAATTTATGCTGCATTCCCAAGCAACATGACTCTTTAGAGTTAAGTTCTATACTACTACTTGC---ACCAAAACGGGTATTTCACCCTCTTTGTAGTTCTTTTTCAAGAAACTTAAGG?????????--??????C?????????????????????????C??AAAGTGATTTTAAAGTT-GGGCTTTTCCCTGTTCATTCGCCATTACTAGGG Furia_ithacensis_FiMD2 TATACCCAAATTTGACGATCGATTTGCACGTCAGAATCGCTACGAGCTTCCACCAGGGTTTCCCCTGGCTTCACCCTATTCAGGCATAGTTCACCATCTTTCGGGTACCAACATATATGCTCTTACTCAAACCAAAGAAAAAAATCCCT-TTAGCTCGGTCGATAGTGCACC--CTAACGGGATCCTACCTTGAAATTACTTTCATTGCGCATAC-?GGTTTTACACCATAATACTTGCATACATGTTAGACTCCTTGGTCCGTGTTTCAAGACGGGTCGCTTAAACCTTCTTAACTATAGTTTTAAGCGGTTTCCTTATAACAATTTCACTTTCTTTTGAG-???????????GGTTCTCTTTCATCTTTCCCTTAAGGTACTTGTTTACTATCGGACTCCTACCAGTATTTAGCCTTAGAAGGAATTTACCTCCCACTTTATGCTGCATTCCCAAGCAACATGACTCTTTAGAGTTAAGTTTTATACTACTACTTGC---ACCAAAACGGGTATTTCACCCTCTTTGTAGTTCTTTTTCAAGAAACTTAAGG?????????--??????C?????????????????????????C??AAAGTGATTTTAAAGTTGGGGCTTTTCCCTGTTCATTCGCCATTACTAGGG Pandora_neoaphidis_ARSEF7939 TATACCCAAATTTGACGATCGATTTGCACGTCAGAATCGCTACGAGCTTCCACCAGGGTTTCCCCTGGCTTCACCCTATTCAGGCATAGTTCACCATCTTTCGGGTACCAACATATATGCTCTTACTCAAACCAAAGAAAAAAATCTCT-TTAGCTCGGTCGATAGTGCACC--CTTGCGGGATCCTACCTTGAAATTACTTTCATTGTGCATAC-?GGTTTTACACCATAATACTTGCATACATGTTAGACTCCTTGGTCCGTGTTTCAAGACGGGTCGCTTAAACCTTCTTAACTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zoophthora_radicans_voucher45 -------------------------------------------------------------------------------------------------------------------------------------------------CCCT-ATAGCTCGGTCGATAGTGCACC--CTTGCGGGATCCTACCTTGAAATTACTTTCATTGCGCAGTC-?GGTTTTAAGCCATAATACTTGCATATATGTTAGACTCCTTGGTCCGTGTTTCAAGACGGGTCGCTTAAGTCTTCTTAACTATAGTTTTAAGCGGTTTCCTTATAACAATTTCACTTTCTTTTGAG-???????????GGTTCTCTTTCATCTTTCCCTTAAGGTACTTGTTTACTATCGGACTCTTACCAGTATTTAGCCTTAGATGGAATTTACCACCCATTTTATGCTGCATTCTCAAGCAACATGACTCTTTAGAGATAAGTTCCATACTACTACTTGC---ACCAAAACGGGAATTTCACCCTCTCTGTAGCTCTTTTTCAAGAGACTTAAGG?????????--??????C?????????????????????????G??TAGGTGATTTTAAAATT-GGGCTTTTCCCTGTTCATTCGCCATTACTAGGG Massospora_diceroproctae_DB128 TATACCCAAGTTTGACGATCGATTGGCACGTCAGAACCGCTACGGGCTTCCACCAGAGTTTCCTCTAGCTTCACCCTACTCAGGCATAGTTCACCATCTTTCGGGTACCATCATTAATGCTCTTACTCAAATCTTTTGGACAAGTCCATGAAAGTTTGGTTGATAGTGCAAACT????-??TTTCCTATCT?----TTACTTTCATTATGCTTGA-?AGTTTTCAACACTTAAACTCGCATTAATGGTAGACTCCTTGGTCCGTGTTTCAAGACGGGACACTTAGAAAACTAAGGTTAT--TTCCAAGCGCTTCCCTTTTGACAATTTCACATTCTTTTAAGTCCCCTTTTCAGG?????-TTTCATCTTTCCCTCACGGTACTTGTTTACTATCGGTCTCTTAGTGATATTTAGCTTTAGTAGGAGTTTACCTACCACTTTATGCTGCACTAACAAGCAACATGACTCTAAAGAAAAAAGTA------?????????????????AGACGGGAATTTCACCCTCTCTGATGATACATTCCAGTATACTTTACAGATTTTCATAAGGAAAC-TTTAATCTCCAATGTTACAATTCAC-A?AAAGTGATTTTCAACAT-GAGCTTTTCCCTGTTCATTCGCCATTACTAAGG Massospora_diceroproctae_DB138 TATACCCAAGTTTGACGATCGATTTGCACGTCAGAACCGCTACGGGCTTCCACCAGAGTTTCCTCTAGCTTCACCCTACTCAGGCATAGTTCACCATCTTTCGGGTACCATCATTAATGCTCTTACTCAAATCTTTTGGACAAGTCCATGAAAGTTTGGTTGATAGTGCAAACT????-??TTTCCTATCT?----TTACTTTCATTATGCTTGA-?AGTTTTCAACACTTAAACTCGCATTAATGGTAGACTCCTTGGTCCGTGTTTCAAGACGGGACACTTAGAAAACTAAGGTTAT--TTCCAAGCGCTTCCCTTTTGACAATTTCACATTCTTTTAAGTCCCCTTTTCAGG?????-TTTCATCTTTCCCTCACGGTACTTGTTTACTATCGGTCTCTTAGTGATATTTAGCTTTAGTAGGAGTTTACCTACCACTTTATGCTGCACTAACAAGCAACATGACTCTAAAGAAAAAAGTA------?????????????????AGACGGGAATTTCACCCTCTCTGATGATACATTCCAGTATACTTTACAGATTTTCATAAGGAAAC-TTTAATCTCCAATGTTACAATTCAC-A?AAAGTGATTTTCAACAT-GAGCTTTTCCCTGTTCATTCGCCATTACTAAGG Massospora_diceroproctae_DB176 TATACCCAAGTTTGACGATCGATTTGCACGTCAGAACCGCTACGGGCTTCCACCAGAGTTTCCTCTAGCTTCACCCTACTCAGGCATAGTTCACCATCTTTCGGGTACCATCATTAATGCTCTTACTCAAATCTTTTGGACAAGTCCATGAAAGTTTGGTTGATAGTGCAAACT????-??TTTCCTATCT?----TTACTTTCATTATGCTTGA-?AGTTTTCAACACTTAAACTCGCATTAATGGTAGACTCCTTGGTCCGTGTTTCAAGACGGGACACTTAGAAAACTAAGGTTAT--TTCCAAGCGCTTCCCTTTTGACAATTTCACATTCTTTTAAGTCCCCTTTTCAGG?????-TTTCATCTTTCCCTCACGGTACTTGTTTACTATCGGTCTCTTAGTGATATTTAGCTTTAGTAGGAGTTTACCTACCACTTTATGCTGCACTAACAAGCAACATGACTCTAAAGAAAAAAGTA------?????????????????AGACGGGAATTTCACCCTCTCTGATGATACATTCCAGTATACTTTACAGATTTTCATAAGGAAAC-TTTAATCTCCAATGTTACAATTCAC-A?AAAGTGATTTTCAAC------------------------------------ ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 651; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 651; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 651; END; BEGIN TREES; Title Massospora_28S_BI_tree; ID 01704605bc8823; LINK Taxa = Taxa; TRANSLATE [0] 1 Massospora_cicadina_GK2, [1] 2 Massospora_cicadina_MC7, [2] 3 Massospora_cicadina_MC17, [3] 4 Massospora_cicadina_MICH231384, [4] 5 Massospora_levispora_ML2, [5] 6 Massospora_levispora_ML4, [6] 7 Massospora_platypediae_CA3, [7] 8 Massospora_platypediae_NM2, [8] 9 Massospora_platypediae_NM4, [9] 10 Massospora_tettigatis_PL5042, [10] 11 Massospora_tettigatis_PL373, [11] 12 Entomophthora_muscae_ARSEF3074, [12] 13 Arthrophaga_myriapodina_Arsp1, [13] 14 Pandora_formicae_v1, [14] 15 Furia_ithacensis_FiMD2, [15] 16 Pandora_neoaphidis_ARSEF7939, [16] 17 Zoophthora_radicans_voucher45, [17] 18 Massospora_diceroproctae_DB128, [18] 19 Massospora_diceroproctae_DB138, [19] 20 Massospora_diceroproctae_DB176; TREE con_50_majrule = (1:0.001053196,2:0.001072108,(3:0.001058686,4:0.001025268,(((5:0.001036479,6:0.001043656,7:0.001044137,8:0.00103828,9:0.002516695):0.02342386,(10:0.001048979,11:0.00258552):0.01777514,((12:0.06056815,13:0.05266379):0.01835373,(((14:0.005484928,16:0.006564127):0.003426864,15:0.008625734):0.02395371,17:0.02986644):0.1951744):0.02105429):0.02908828,(18:0.002634328,19:0.001090134,20:0.001178281):0.2355658):0.009652681):0.002483147); END; BEGIN TREES; Title Massospora_28S_ML_tree; ID 01704606638b24; LINK Taxa = Taxa; TRANSLATE [0] 1 Massospora_cicadina_GK2, [1] 2 Massospora_cicadina_MC7, [2] 3 Massospora_cicadina_MC17, [3] 4 Massospora_cicadina_MICH231384, [4] 5 Massospora_levispora_ML2, [5] 6 Massospora_levispora_ML4, [6] 7 Massospora_platypediae_CA3, [7] 8 Massospora_platypediae_NM2, [8] 9 Massospora_platypediae_NM4, [9] 10 Massospora_tettigatis_PL5042, [10] 11 Massospora_tettigatis_PL373, [11] 12 Entomophthora_muscae_ARSEF3074, [12] 13 Arthrophaga_myriapodina_Arsp1, [13] 14 Pandora_formicae_v1, [14] 15 Furia_ithacensis_FiMD2, [15] 16 Pandora_neoaphidis_ARSEF7939, [16] 17 Zoophthora_radicans_voucher45, [17] 18 Massospora_diceroproctae_DB128, [18] 19 Massospora_diceroproctae_DB138, [19] 20 Massospora_diceroproctae_DB176; TREE Imported_tree_1 = (4:0.00000100000050002909,(((((17:0.03578232334095801,(15:0.007729129812168691,(16:0.004625080836986955,14:0.005043772928926479):0.002357767932763348[%bootstrapFrequency = 52 ]):0.021698819013972127[%bootstrapFrequency = 85 ]):0.233081121376422[%bootstrapFrequency = 100 ],(13:0.057586035980964616,12:0.0643428133712155):0.016787245192820006[%bootstrapFrequency = 76 ]):0.019967744175540255[%bootstrapFrequency = 56 ],((11:0.0016208603259644503,10:0.00000100000050002909):0.018451136151101964[%bootstrapFrequency = 100 ],((((5:0.00000100000050002909,7:0.00000100000050002909):0.00000100000050002909[%bootstrapFrequency = 35 ],6:0.00000100000050002909):0.00000100000050002909[%bootstrapFrequency = 98 ],8:0.00000100000050002909):0.00000100000050002909[%bootstrapFrequency = 62 ],9:0.0016225907974508696):0.02503534085544768[%bootstrapFrequency = 100 ]):0.004678023286006632[%bootstrapFrequency = 36 ]):0.03045677539516815[%bootstrapFrequency = 74 ],(18:0.001716091077676212,(19:0.00000100000050002909,20:0.00000100000050002909):0.00000100000050002909[%bootstrapFrequency = 60 ]):0.2825029931420044[%bootstrapFrequency = 100 ]):0.005000148453458923[%bootstrapFrequency = 96 ],(1:0.00000100000050002909,2:0.00000100000050002909):0.0017259501160366512[%bootstrapFrequency = 89 ]):0.00000100000050002909[%bootstrapFrequency = 85 ],3:0.00000100000050002909)[% ] [% ] [% setBetweenDouble = bootstrapFrequency ]; END; BEGIN TREES; Title Massospora_28S_MP_Bootstrap_Consensus_tree; ID 01704607029625; LINK Taxa = Taxa; TRANSLATE [0] 1 Massospora_cicadina_GK2, [1] 2 Massospora_cicadina_MC7, [2] 3 Massospora_cicadina_MC17, [3] 4 Massospora_cicadina_MICH231384, [4] 5 Massospora_levispora_ML2, [5] 6 Massospora_levispora_ML4, [6] 7 Massospora_platypediae_CA3, [7] 8 Massospora_platypediae_NM2, [8] 9 Massospora_platypediae_NM4, [9] 10 Massospora_tettigatis_PL5042, [10] 11 Massospora_tettigatis_PL373, [11] 12 Entomophthora_muscae_ARSEF3074, [12] 13 Arthrophaga_myriapodina_Arsp1, [13] 14 Pandora_formicae_v1, [14] 15 Furia_ithacensis_FiMD2, [15] 16 Pandora_neoaphidis_ARSEF7939, [16] 17 Zoophthora_radicans_voucher45, [17] 18 Massospora_diceroproctae_DB128, [18] 19 Massospora_diceroproctae_DB138, [19] 20 Massospora_diceroproctae_DB176; TREE 'PAUP_1' = (1:100,2:100,(3:100,4:100,((5:100,6:100,7:100,8:100,9:100):100,(10:100,11:100):99.801,((12:100,13:100):56.401,((((14:100,16:100):70.5,15:100):98.821,17:100):100,(18:100,19:100,20:100):100):90.935):77.534):100):71.192); END; BEGIN TREES; Title 'Massospora 28S MP Majority-Rule Consensus tree'; ID 0170460780ef26; LINK Taxa = Taxa; TRANSLATE [0] 1 Massospora_cicadina_GK2, [1] 2 Massospora_cicadina_MC7, [2] 3 Massospora_cicadina_MC17, [3] 4 Massospora_cicadina_MICH231384, [4] 5 Massospora_levispora_ML2, [5] 6 Massospora_levispora_ML4, [6] 7 Massospora_platypediae_CA3, [7] 8 Massospora_platypediae_NM2, [8] 9 Massospora_platypediae_NM4, [9] 10 Massospora_tettigatis_PL5042, [10] 11 Massospora_tettigatis_PL373, [11] 12 Entomophthora_muscae_ARSEF3074, [12] 13 Arthrophaga_myriapodina_Arsp1, [13] 14 Pandora_formicae_v1, [14] 15 Furia_ithacensis_FiMD2, [15] 16 Pandora_neoaphidis_ARSEF7939, [16] 17 Zoophthora_radicans_voucher45, [17] 18 Massospora_diceroproctae_DB128, [18] 19 Massospora_diceroproctae_DB138, [19] 20 Massospora_diceroproctae_DB176; TREE MajRule = (1,2,(3,4,((5,6,7,8,9)[%bootstrapFrequency = 100 ],(10,11)[%bootstrapFrequency = 100 ],((12,13)[%bootstrapFrequency = 100 ],((((14,16)[%bootstrapFrequency = 100 ],15)[%bootstrapFrequency = 100 ],17)[%bootstrapFrequency = 100 ],(18,19,20)[%bootstrapFrequency = 100 ])[%bootstrapFrequency = 100 ])[%bootstrapFrequency = 100 ])[%bootstrapFrequency = 100 ])[%bootstrapFrequency = 100 ])[%bootstrapFrequency = 0.0 ] [% ] [% setBetweenDouble = bootstrapFrequency ]; END; BEGIN TREES; Title Massospora_28S_MP_all_MP_trees; ID 0170460839cb27; LINK Taxa = Taxa; TRANSLATE [0] 1 Massospora_cicadina_GK2, [1] 2 Massospora_cicadina_MC7, [2] 3 Massospora_cicadina_MC17, [3] 4 Massospora_cicadina_MICH231384, [4] 5 Massospora_levispora_ML2, [5] 6 Massospora_levispora_ML4, [6] 7 Massospora_platypediae_CA3, [7] 8 Massospora_platypediae_NM2, [8] 9 Massospora_platypediae_NM4, [9] 10 Massospora_tettigatis_PL5042, [10] 11 Massospora_tettigatis_PL373, [11] 12 Entomophthora_muscae_ARSEF3074, [12] 13 Arthrophaga_myriapodina_Arsp1, [13] 14 Pandora_formicae_v1, [14] 15 Furia_ithacensis_FiMD2, [15] 16 Pandora_neoaphidis_ARSEF7939, [16] 17 Zoophthora_radicans_voucher45, [17] 18 Massospora_diceroproctae_DB128, [18] 19 Massospora_diceroproctae_DB138, [19] 20 Massospora_diceroproctae_DB176; TREE 'PAUP_1' = (1,2,((3,((((5,6,7,8),9),(10,11)),((12,13),((((14,16),15),17),(18,19,20))))),4)); TREE 'PAUP_2' = (1,2,(3,(4,((((5,6,7,8),9),(10,11)),((12,13),((((14,16),15),17),(18,19,20))))))); TREE 'PAUP_3' = (1,2,(3,(4,(((5,6,7,8),9),((10,11),((12,13),((((14,16),15),17),(18,19,20)))))))); TREE 'PAUP_4' = (1,2,(3,4,(((5,6,7,8),9),((10,11),((12,13),((((14,16),15),17),(18,19,20))))))); TREE 'PAUP_5' = (1,2,(3,4,((((5,6,7,8),9),(10,11)),((12,13),((((14,16),15),17),(18,19,20)))))); TREE 'PAUP_6' = (1,2,((3,(((5,6,7,8),9),((10,11),((12,13),((((14,16),15),17),(18,19,20)))))),4)); TREE 'PAUP_7' = (1,2,((3,((5,6,7,8,9),((10,11),((12,13),((((14,16),15),17),(18,19,20)))))),4)); TREE 'PAUP_8' = (1,2,((3,(((5,6,7,8,9),(10,11)),((12,13),((((14,16),15),17),(18,19,20))))),4)); TREE 'PAUP_9' = (1,2,((3,((((5,6,7,9),8),(10,11)),((12,13),((((14,16),15),17),(18,19,20))))),4)); TREE 'PAUP_10' = (1,2,((3,(((5,6,7,9),8),((10,11),((12,13),((((14,16),15),17),(18,19,20)))))),4)); TREE 'PAUP_11' = (1,2,((3,(((((5,6,7),8),9),(10,11)),((12,13),((((14,16),15),17),(18,19,20))))),4)); TREE 'PAUP_12' = (1,2,((3,((((5,6,7,8),9),(10,11)),((12,13),((((14,16),15),17),((18,19),20))))),4)); TREE 'PAUP_13' = (1,2,((3,((((5,6,7),8,9),(10,11)),((12,13),((((14,16),15),17),(18,19,20))))),4)); TREE 'PAUP_14' = (1,2,((3,(((((5,6,7),9),8),(10,11)),((12,13),((((14,16),15),17),(18,19,20))))),4)); TREE 'PAUP_15' = (1,2,(3,(4,(((((5,6,7),8),9),(10,11)),((12,13),((((14,16),15),17),(18,19,20))))))); TREE 'PAUP_16' = (1,2,((3,((((5,6,7),8),9),((10,11),((12,13),((((14,16),15),17),(18,19,20)))))),4)); TREE 'PAUP_17' = (1,2,(3,4,((((5,6,7),8),9),((10,11),((12,13),((((14,16),15),17),(18,19,20))))))); TREE 'PAUP_18' = (1,2,(3,4,(((((5,6,7),8),9),(10,11)),((12,13),((((14,16),15),17),(18,19,20)))))); TREE 'PAUP_19' = (1,2,(3,(4,((((5,6,7),8),9),((10,11),((12,13),((((14,16),15),17),(18,19,20)))))))); TREE 'PAUP_20' = (1,2,(3,(4,((((5,6,7),9),8),((10,11),((12,13),((((14,16),15),17),(18,19,20)))))))); TREE 'PAUP_21' = (1,2,(3,(4,(((5,6,7),8,9),((10,11),((12,13),((((14,16),15),17),(18,19,20)))))))); TREE 'PAUP_22' = (1,2,(3,(4,(((5,6,7,8,9),(10,11)),((12,13),((((14,16),15),17),(18,19,20))))))); TREE 'PAUP_23' = (1,2,(3,(4,((5,6,7,8,9),((10,11),((12,13),((((14,16),15),17),(18,19,20)))))))); TREE 'PAUP_24' = (1,2,(3,(4,((((5,6,7,9),8),(10,11)),((12,13),((((14,16),15),17),(18,19,20))))))); TREE 'PAUP_25' = (1,2,(3,(4,((((5,6,7),8,9),(10,11)),((12,13),((((14,16),15),17),(18,19,20))))))); TREE 'PAUP_26' = (1,2,(3,(4,(((((5,6,7),9),8),(10,11)),((12,13),((((14,16),15),17),(18,19,20))))))); TREE 'PAUP_27' = (1,2,(3,(4,(((((5,6,7),8),9),(10,11)),((12,13),((((14,16),15),17),((18,19),20))))))); TREE 'PAUP_28' = (1,2,(3,(4,(((5,6,7,9),8),((10,11),((12,13),((((14,16),15),17),(18,19,20)))))))); TREE 'PAUP_29' = (1,2,(3,(4,((((5,6,7),8),9),((10,11),((12,13),((((14,16),15),17),((18,19),20)))))))); TREE 'PAUP_30' = (1,2,(3,(4,(((5,6,7,8),9),((10,11),((12,13),((((14,16),15),17),((18,19),20)))))))); TREE 'PAUP_31' = (1,2,(3,4,((5,6,7,8,9),((10,11),((12,13),((((14,16),15),17),(18,19,20))))))); TREE 'PAUP_32' = (1,2,(3,4,((((5,6,7,9),8),(10,11)),((12,13),((((14,16),15),17),(18,19,20)))))); TREE 'PAUP_33' = (1,2,(3,4,(((5,6,7,8,9),(10,11)),((12,13),((((14,16),15),17),(18,19,20)))))); TREE 'PAUP_34' = (1,2,(3,4,(((5,6,7,9),8),((10,11),((12,13),((((14,16),15),17),(18,19,20))))))); TREE 'PAUP_35' = (1,2,(3,4,((((5,6,7,8),9),(10,11)),((12,13),((((14,16),15),17),((18,19),20)))))); TREE 'PAUP_36' = (1,2,(3,4,((((5,6,7),8,9),(10,11)),((12,13),((((14,16),15),17),(18,19,20)))))); TREE 'PAUP_37' = (1,2,(3,4,(((((5,6,7),9),8),(10,11)),((12,13),((((14,16),15),17),(18,19,20)))))); TREE 'PAUP_38' = (1,2,((3,((((5,6,7),8),9),((10,11),((12,13),((((14,16),15),17),((18,19),20)))))),4)); TREE 'PAUP_39' = (1,2,((3,(((((5,6,7),8),9),(10,11)),((12,13),((((14,16),15),17),((18,19),20))))),4)); TREE 'PAUP_40' = (1,2,((3,(((((5,6,7),9),8),(10,11)),((12,13),((((14,16),15),17),((18,19),20))))),4)); TREE 'PAUP_41' = (1,2,((3,((((5,6,7),8,9),(10,11)),((12,13),((((14,16),15),17),((18,19),20))))),4)); TREE 'PAUP_42' = (1,2,((3,((5,6,7,8,9),((10,11),((12,13),((((14,16),15),17),((18,19),20)))))),4)); TREE 'PAUP_43' = (1,2,((3,(((5,6,7,8,9),(10,11)),((12,13),((((14,16),15),17),((18,19),20))))),4)); TREE 'PAUP_44' = (1,2,(3,4,(((((5,6,7),8),9),(10,11)),((12,13),((((14,16),15),17),((18,19),20)))))); TREE 'PAUP_45' = (1,2,(3,4,((((5,6,7),8),9),((10,11),((12,13),((((14,16),15),17),((18,19),20))))))); TREE 'PAUP_46' = (1,2,((3,(((5,6,7,9),8),((10,11),((12,13),((((14,16),15),17),((18,19),20)))))),4)); TREE 'PAUP_47' = (1,2,((3,(((5,6,7,8),9),((10,11),((12,13),((((14,16),15),17),((18,19),20)))))),4)); TREE 'PAUP_48' = (1,2,((3,(((5,6,7),8,9),((10,11),((12,13),((((14,16),15),17),((18,19),20)))))),4)); TREE 'PAUP_49' = (1,2,((3,((((5,6,7),9),8),((10,11),((12,13),((((14,16),15),17),((18,19),20)))))),4)); TREE 'PAUP_50' = (1,2,((3,((((5,6,7,9),8),(10,11)),((12,13),((((14,16),15),17),((18,19),20))))),4)); TREE 'PAUP_51' = (1,2,(3,(4,((5,6,7,8,9),((10,11),((12,13),((((14,16),15),17),((18,19),20)))))))); TREE 'PAUP_52' = (1,2,(3,(4,(((5,6,7,8,9),(10,11)),((12,13),((((14,16),15),17),((18,19),20))))))); TREE 'PAUP_53' = (1,2,(3,4,(((5,6,7,8,9),(10,11)),((12,13),((((14,16),15),17),((18,19),20)))))); TREE 'PAUP_54' = (1,2,(3,4,((5,6,7,8,9),((10,11),((12,13),((((14,16),15),17),((18,19),20))))))); TREE 'PAUP_55' = (1,2,(3,(4,(((((5,6,7),9),8),(10,11)),((12,13),((((14,16),15),17),((18,19),20))))))); TREE 'PAUP_56' = (1,2,(3,(4,((((5,6,7),9),8),((10,11),((12,13),((((14,16),15),17),((18,19),20)))))))); TREE 'PAUP_57' = (1,2,(3,4,((((5,6,7),9),8),((10,11),((12,13),((((14,16),15),17),((18,19),20))))))); TREE 'PAUP_58' = (1,2,(3,4,(((((5,6,7),9),8),(10,11)),((12,13),((((14,16),15),17),((18,19),20)))))); TREE 'PAUP_59' = (1,2,(3,(4,(((5,6,7,9),8),((10,11),((12,13),((((14,16),15),17),((18,19),20)))))))); TREE 'PAUP_60' = (1,2,(3,(4,((((5,6,7,9),8),(10,11)),((12,13),((((14,16),15),17),((18,19),20))))))); TREE 'PAUP_61' = (1,2,(3,4,((((5,6,7,9),8),(10,11)),((12,13),((((14,16),15),17),((18,19),20)))))); TREE 'PAUP_62' = (1,2,(3,4,(((5,6,7,9),8),((10,11),((12,13),((((14,16),15),17),((18,19),20))))))); TREE 'PAUP_63' = (1,2,(3,(4,((((5,6,7,8),9),(10,11)),((12,13),((((14,16),15),17),((18,19),20))))))); TREE 'PAUP_64' = (1,2,(3,4,(((5,6,7,8),9),((10,11),((12,13),((((14,16),15),17),((18,19),20))))))); TREE 'PAUP_65' = (1,2,(3,(4,((((5,6,7),8,9),(10,11)),((12,13),((((14,16),15),17),((18,19),20))))))); TREE 'PAUP_66' = (1,2,(3,(4,(((5,6,7),8,9),((10,11),((12,13),((((14,16),15),17),((18,19),20)))))))); TREE 'PAUP_67' = (1,2,(3,4,(((5,6,7),8,9),((10,11),((12,13),((((14,16),15),17),((18,19),20))))))); TREE 'PAUP_68' = (1,2,(3,4,((((5,6,7),8,9),(10,11)),((12,13),((((14,16),15),17),((18,19),20)))))); TREE 'PAUP_69' = (1,2,((3,(((5,6,7),8,9),((10,11),((12,13),((((14,16),15),17),(18,19,20)))))),4)); TREE 'PAUP_70' = (1,2,((3,((((5,6,7),9),8),((10,11),((12,13),((((14,16),15),17),(18,19,20)))))),4)); TREE 'PAUP_71' = (1,2,(3,4,((((5,6,7),9),8),((10,11),((12,13),((((14,16),15),17),(18,19,20))))))); TREE 'PAUP_72' = (1,2,(3,4,(((5,6,7),8,9),((10,11),((12,13),((((14,16),15),17),(18,19,20))))))); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1581722990104; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4434493004444733020; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3936253725887135984; mqVersion 360; checksumv 0 3 252608137 null getNumChars 651 numChars 651 getNumTaxa 20 numTaxa 20 short true bits 15 states 15 sumSquaresStatesOnly 307605.0 sumSquares 307605.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 335; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1425 556; setLocation 66 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3936253725887135984 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1090 484; setLocation 66 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;