#NEXUS [written Fri Feb 14 18:35:45 EST 2020 by Mesquite version 3.6 (build 917) at Angies-Mac.local/157.182.250.48] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=16; TAXLABELS Massospora_cicadina_GK2 Massospora_cicadina_MC7 Massospora_cicadina_MC17 Massospora_levispora_ML2 Massospora_platypediae_CA3 Massospora_platypediae_NM2 Massospora_platypediae_NM4 Massospora_levispora_ML4 Massospora_tettigatis_PL5042 Massospora_tettigatis_PL373 Entomophthora_muscae_ARSEF3074 Pandora_formicae_v1 Furia_ithacensis_FiMD2 Pandora_neoaphidis_ARSEF7939 Arthrophaga_myriapodina_Arsp1 Massospora_diceroproctae_DB176 ; END; BEGIN CHARACTERS; TITLE Massospora_EFL_Alignment; DIMENSIONS NCHAR=449; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Massospora_cicadina_GK2 GGGGCGTCGTCATTACGGCCAGGAAGCTCAACAAAGTCGTTGAGAGCTTGCTGGAGGGTTTCGATGTGGTGAGACTTACCAGACTGAGACTTAACGTCAACTCCCTTCCACCAGGCCATATTCTCGGACTTCTTTAGGAGATTGTCACCGATCCACCCGGAGATGGGAATGACGGGAACATTTTGCTCAACAAACTCCTTCTTCCAGCCAACTTTAACCAACATGGAGGCCATTTCGTCGCGGATTTCATTGTAGCGGTCCTGCTTGTATCCGGCAGTGTCACTGTCCATCTTGTTAACGCCAACGATGAGCTGCTTGACGCCGAGAAGGTTGAGAAGGCGAGCGTGTTGGCGAGTCTGGCCCTGGATATCGCCGG--CCTTGTGGTCACCCTTCTGGAT-----GGCGGTAGTAAAGTTACCGTCGGCGGGAACCATGAGGAGAGC-- Massospora_cicadina_MC7 GGGGCGTCGTCATTACGGCCAGGAAGCTCAACAAAGTCGTTGAGAGCTTGCTGGAGGGTTTCGATGTGGTGAGACTTACCAGACTGAGACTTAACGTCAACTCCCTTCCACCAGGCCATATTCTCGGACTTCTTGAGGAGATTGTCACCGATCCATCCGGAGATGGGAATGACGGGAACATTTTGCTCAACAAATTCCTTCTTCCAGCCAACTTTAACCAACATGGAGGCCATTTCGTCGCGGATCTCATTGTAGCGGTCCTGCTTATACCCGGCAGTGTCACTGTCCATCTTGTTAACGCCAACGATGAGCTGCTTGACGCCGAGAAGGTTGAGAAGGCGAGCGTGTTGGCGAGTCTGGCCCTGGATATCGCCGG--CCTTGTGGTCACCCTTCTGGAT-----GGCGGTAGTAAAGTTACCGTCGGCGGGAACCATGAGGAGAGC-- Massospora_cicadina_MC17 GGGGCGTCGTCATTACGGCCAGGAAGCTCAACAAAGTCGTTGAGAGCTTGCTGGAGGGTTTCGATGTGGTGAGACTTACCAGACTGAGACTTAACGTCAACTCCCTTCCACCAGGCCATATTCTCGGACTTCTTGAGGAGATTGTCACCGATCCATCCGGAGATGGGAATGACGGGAACATTTTGCTCAACAAATTCCTTCTTCCAGCCAACTTTAACCAACATGGAGGCCATTTCGTCGCGGATTTCATTGTAGCGGTCCTGCTTATATCCGGCAGTGTCACTGTCCATCTTGTTAACGCCAACGATGAGCTGCTTGACACCGAGAAGGTTGAGAAGGCGAGCGTGTTGGCGAGTCTGGCCCTGGATATCGCCAG--CCTTGTGGTCACCCTT------------------------------------------------------- Massospora_levispora_ML2 GGAGCGTCGTCAACGCGAGCAGGAAGTTCAACAAAATCATTGAGGGCTTGTTGGAGGGTTTCGATGTGGTGAGGCTTGCCAGACTGAGACTTGACGTCAACTCCCTTCCACCAGGTCATGTTGTCGGACTTCTTGAGAAGATTGTCACCCATCCATCCGGAAATGGGAAGGACGGGGACATTCTGCTCGACAAACTCCTTCTTCCAACCCACTTTAACCAACATGGAGACCATCTCGTCGCGGATCTCATTGTAACGGTCCTGCTTGTAGCCGGCGGTATCACTGTCCATCTTGTTGACACCAATGATGAGCTGCTTGACACCGAGCAGGTTGAGAAGGCGGGCATGCTGGCGAGTCTGACCCTGAATATCTCCGG--CCTTATGATCACCCTTCTGGAT-----GGCGGTCGTAAAGTTACCGTCGGCGGGAACCATGAGGAGAGCGA Massospora_platypediae_CA3 GGAGCGTCGTCAACGCGAGCAGGAAGTTCAACAAAATCATTGAGGGCTTGTTGGAGGGTTTCGATGTGGTGAGGCTTGCCAGACTGAGACTTGACGTCAACTCCCTTCCACCAGGTCATGTTGTCGGACTTCTTGAGAAGATTGTCACCCATCCATCCGGAAATGGGAAGGACGGGGACATTCTGCTCGACAAACTCCTTCTTCCAACCCACTTTAACCAACATGGAGACCATCTCGTCGCGGATCTCATTGTAACGGTCCTGCTTGTAGCCGGCGGTATCACTGTCCATCTTGTTGACACCAATGATGAGCTGCTTGACACCGAGCAGGTTGAGAAGGCGGGCATGCTGGCGAGTCTGACCCTGAATATCTCCGG--CCTTATGATCACCCTTCTGGAT-----GGCGGTCGTAAAGTTACCGTCGGCGGGAACCATGAGGAGAGCGA Massospora_platypediae_NM2 GGAGCGTCGTC-ACGCGAGCAGGAAGTTCAACAAAATCATTGAGGGCTTGTTGGAGGGTTTCGATGTGGTGAGGCTTGCCAGACTGAGACTTGACGTCAACTCCCTTCCACCAGGTCATGTTGTCGGACTTCTTGAGAAGATTGTCACCCATCCATCCGGAAATGGGAAGGACGGGGACATTCTGCTCGACAAACTCCTTCTTCCAACCCACTTTAACCAACATGGAGACCATCTCGTCGCGGATCTCATTGTAACGGTCCTGCTTGTAGCCGGCGGTATCACTGTCCATCTTGTTGACACCAATGATGAGCTGCTTGACACCGAGCAGGTTGAGAAGGCGGGCATGCTGGCGAGTCTGACCCTGAATATCTCCGG--CCTTATGATCACCCTTCTGGAT-----GGCGGTCGTAAAGTTACCGTCGGCGGGAACCATGAGGAGAGCGA Massospora_platypediae_NM4 GGAGCGTCGTC-ACGCGAGCAGGAAGTTCAACAAAATCATTGAGGGCTTGTTGGAGGGTTTCGATGTGGTGAGGCTTGCCAGACTGAGACTTGACGTCAACTCCCTTCCACCAGGTCATGTTGTCGGACTTCTTGAGAAGATTGTCACCCATCCATCCGGAAATGGGAAGGACGGGGACATTCTGCTCGACAAACTCCTTCTTCCAACCCACTTTAACCAACATGGAGACCATCTCGTCGCGGATCTCATTGTAACGGTCCTGCTTGTAGCCGGCGGTATCACTGTCCATCTTGTTGACACCAATGATGAGCTGCTTGACACCGAGCAGGTTGAGAAGGCGGGCATGCTGGCGAGTCTGACCCTGAATATCTCCGG--CCTTATGATCACCCTTCTGGAT-----GGCGGTCGTAAAGTTACCGTCGGCGGGAACCATGAGGAGAGCGA Massospora_levispora_ML4 GGAGCGTCGTCAACGCGAGCAGGAAGTTCAACAAAATCATTGAGGGCTTGTTGGAGGGTTTCGATGTGGTGAGGCTTGCCAGACTGAGACTTGACGTCAACTCCCTTCCACCAGGTCATGTTGTCGGACTTCTTGAGAAGATTGTCACCCATCCATCCGGAAATGGGAAGGACGGGGACATTCTGCTCGACAAACTCCTTCTTCCAACCCACTTTAACCAACATGGAGACCATCTCGTCGCGGATCTCATTGTAACGGTCCTGCTTGTAGCCGGCGGTATCACTGTCCATCTTGTTGACACCAATGATGAGCTGCTTGACACCGAGCAGGTTGAGAAGGCGGGCATGCTGGCGAGTCTGACCCTGAATATCTCCGG--CCTTATGATCACCCT-------------------------------------------------------- Massospora_tettigatis_PL5042 GGAGCGTCGTCGACGCGAGAGGGAAGTTCGACAAAATCATTGAGGGCTTGTTGAAGGGTTTCGATGTGGTGAGGCTTGCCAGACTGAGACTTGACGTCAACCCCCTTCCACCACGCCATATTCTCGGACTTCTTGAGAAGATTGTCACCGATCCATCCGGAGATGGGGATGACGGGAACGTTTTGCTCAACAAATTCCTTCTTCCACCCCACCTTAACCAACATGGAGGCCATCTCGTCACGGATTTCATTGTAACGGTCCTGCTTGTACCCGGCGGTGTCGCTGTCCATCTTGTTAACACCAACGATGAGCTGCTTCACGCCAAGCAGATTGAGAAGACGGGCGTGCTGGCGAGTTTGGCCCTGAATATCGCCGG--CCTTATGGTCGCCCTTCTGAAT-----GGCGGTGGTAAAGTTACCGTCGGCGGGGACCATAAGAAGAGCG- Massospora_tettigatis_PL373 -------------CGCGAGAGGGAAGTTCGACAAAATCATTGAGGGCTTGTTGAAGGGTTTCGATGTGGTGAGGCTTGCCAGACTGAGACTTGACGTCAACCCCCTTCCACCACGCCATATTCTCGGACTTCTTGAGAAGATTGTCACCGATCCATCCGGAGATGGGGATGACGGGAACGTTTTGCTCAACAAATTCCTTCTTCCACCCCACCTTAACCAACATGGAGGCCATCTCGTCACGGATTTCATTGTAACGGTCCTGCTTGTACCCGGCGGTGTCACTGTCCATCTTGTTAACACCAACGATGAGCTGCTTCACGCCAAGCAGATTGAGAAGACGGGCGTGCTGGCGAGTTTGGCCCTGAATATCGCCGG--CCTTATGGTCGCCCTTCTGAAT-----GGCGGTGGTGAAATTACCGTCGGCGGGGACCATGAGAAGAGCGA Entomophthora_muscae_ARSEF3074 GGAGCGTCATCGACACGGGAGGGAAGCTCAACGAAGTCGTTAAGAGCAACCTGGAGGGTCTCGATATGGAAATCCTTGCCACTCTGGTTCTTAACGTCAACACCCTTCCACCAGGTCATCTTCTCTGACTTCTTGAGAAGATTGTCACCCATCCATCCGGAGATGGGGAGGACGGGAACGTTCTGCTCAACGAACTCCTTCTTCCATCCGACCTTGATCAACATGGAGCGCATCTCATCACGGATCTCGTTGTAACGATCCTCTTTGTATCCAGCGGTGTCACAGTCCATCTTGTTAATACCAATGATGAGCTGCTTAACACCGAGAAGATTGAGAAGACGGGCATGCTGGCGGGTCTGTCCCTGGATATCTCCGG--CCTTGTGGTCACCCTTTTGGAT-----GGCGGTGGTGAAGTTACCGTCGGCGGGGACCATGAGAAGGGCGA Pandora_formicae_v1 ---------------------------------------------------------------------------------GAAGAGGTCAAGACATCAACTCCCTTCCACCATGTCATCTTTTCAGATTTCTTGATCAAGTTATCACCCATCCATCCGGAAATGGGGAGAACGGGAACGTTTTGTTCAATAAATTCTTTCTTCCATCCGACCTTGATCAACATATTTTTCATTTCATCACGGATTTCATTATAACGATCTTCCTTGTAACCAGCGGTGTCACAATCCATCTTGTTAATACCGACAATAAGTTGCTTAACACCGAGCAAGTTAAGAAGACGAGCGTGTTGACGAGTTTGTCCTTG------------------------------------------------------------------------------------ Furia_ithacensis_FiMD2 GGAGCATCTGATTTACGAGAAGGAAGTTCAACGTAGGTGTTAAGAGCTTCAGCGAGAGTATCAAGATGTAACTTGGATCCAGAGGAGGTCAAGACATCAACACCCTTCCACCAAGTCATCTTTTCAGATTTCTTGATCAAGTTATCACCCATCCATCCAGAAATGGGGAGAACGGGGACATTTTGTTCAATAAATTCCTTCTTCCATCCGACCTTGATTAACATGTTTTTCATTTCATCACGAATTTCATTATAACGATCTTCCTTGTATCCAGCGGTATCACAATCCATCTTGTTTACACCAATGATAAGTTGTTTGACACCGAGTAAGTTAAGAAGACGAGCGTGTTGACGAGTTTGGCCTTGGATATCTCCGG--CCTTGTGGTCACCCTTTTGAAT-----AGCAGTGGTGAAATTACCGTCAGCAGGGACCATAAGAAGAGCGA Pandora_neoaphidis_ARSEF7939 -------------------------------------------------------------------------------------------AGACATCAACACCTTTCCACCAAGTCATCTTTTCGGACTTCTTAATCAAGTTGTCACCCATCCAACCGGAAATAGGGAGAACGGGGACATTTTGCTCAATGAATTCTTTCTTCCATCCGACCTTGATCAACATATTGCGCATTTCATCTCGGATTTCATTATAACGATCTTCCTTGTATCCGGCGGTATCACAATCCATCTTGTTAATACCAATGATAAGTTGTTTAACACCGAGCAAGTTAAGAAGACGAGCGTGCTGACGAGTTTGTCCTTGAATATCTCCGG--CTTT------------------------------------------------------------------- Arthrophaga_myriapodina_Arsp1 GCAGCGTCATTGACGCGAGAGGGAAGCTCAGCGAACAGGTTGAGAGCATCCTGAAGGGTTTCGATATGAAGAGACTTTCCCGAAACAGTCTTGAGATCAACACCCTTCCACCAGGACATCTTCTCGGACTTTTTGAGAAGATTATCACCCAACCATCCGGAGATAGGGATAATAGGAACGTTCTGCTCAACGAATTCCTTCTTCCATCCGACTTTGATCAACATGGAAACCATCTCGTCACGGATTTCATTGTAACGTCCCTCCTTGTACCCGGCGGTGTCAGAGTCCATCTTGTTTACGCCAATAATAAGCTGTTTAACCCCAAGAAGATTGAGAAGACGGGCGTGCTGGCGAGTCTGGCCCTGAATATCTCCGAGC??????????????????????GAGCG????????????????????------------------------ Massospora_diceroproctae_DB176 GGGGCATCGTGTTTACGATCTGGGAGCTCGACGTAGTCATCAAGGGCCTGCTTGATCGTCTGGATGGTGCTGACCTTACCAGACGCAGACTTGCATTGAACGCCCTTCCACCAGCTCATATTCTCAGACACGGAGCAAAGATTGTCACCTCTCAAACCAGAGATGGGGATAATAGGAACGCTCTGTTCAACAAATTCCTTCTTCCAGCCAACTTTAACCAACATGGAGGCCATTTCGTCACGGATTTCACTAAAACGTTCAAGTGAGTACTTAGCCATATCACAGTCCATCTTGTTAACACCGACGATCAACTGCTTGACACCGATCAGATTGAGAAGGCGAGCGTGCTGGCGAGTCTGGCCCTGAATATCACCAG--TCTTGAAGTCACCCTTCTGAAT-----AGCGGTAGTGAAGTTACCATCGGCAGGGATCATGAGGAGACCGA ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 449; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 449; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 449; END; BEGIN TREES; Title Massospora_EFL_BI_tree; ID 0170460b20fc28; LINK Taxa = Taxa; TRANSLATE [0] 1 Massospora_cicadina_GK2, [1] 2 Massospora_cicadina_MC7, [2] 3 Massospora_cicadina_MC17, [3] 4 Massospora_levispora_ML2, [4] 5 Massospora_platypediae_CA3, [5] 6 Massospora_platypediae_NM2, [6] 7 Massospora_platypediae_NM4, [7] 8 Massospora_levispora_ML4, [8] 9 Massospora_tettigatis_PL5042, [9] 10 Massospora_tettigatis_PL373, [10] 11 Entomophthora_muscae_ARSEF3074, [11] 12 Pandora_formicae_v1, [12] 13 Furia_ithacensis_FiMD2, [13] 14 Pandora_neoaphidis_ARSEF7939, [14] 15 Arthrophaga_myriapodina_Arsp1, [15] 16 Massospora_diceroproctae_DB176; TREE con_50_majrule = (1:0.009645639,2:0.004216314,3:0.006151346,(((4:0.001463915,5:0.00146973,6:0.00151512,7:0.001535021,8:0.001693719):0.05655963,((9:0.006632452,10:0.005093454):0.0381567,((11:0.05360641,((12:0.04166546,13:0.05063438):0.05233292,14:0.03270667):0.2040796):0.04258194,15:0.1276304):0.08312161):0.03147573):0.04745688,16:0.3348968):0.0313805); END; BEGIN TREES; Title Massospora_EFL_ML_tree; ID 0170460bce7829; LINK Taxa = Taxa; TRANSLATE [0] 1 Massospora_cicadina_GK2, [1] 2 Massospora_cicadina_MC7, [2] 3 Massospora_cicadina_MC17, [3] 4 Massospora_levispora_ML2, [4] 5 Massospora_platypediae_CA3, [5] 6 Massospora_platypediae_NM2, [6] 7 Massospora_platypediae_NM4, [7] 8 Massospora_levispora_ML4, [8] 9 Massospora_tettigatis_PL5042, [9] 10 Massospora_tettigatis_PL373, [10] 11 Entomophthora_muscae_ARSEF3074, [11] 12 Pandora_formicae_v1, [12] 13 Furia_ithacensis_FiMD2, [13] 14 Pandora_neoaphidis_ARSEF7939, [14] 15 Arthrophaga_myriapodina_Arsp1, [15] 16 Massospora_diceroproctae_DB176; TREE Imported_tree_1 = (((((7:0.00000100000050002909,6:0.00000100000050002909):0.00000100000050002909[%bootstrapFrequency = 66 ],(5:0.00000100000050002909,4:0.00000100000050002909):0.00000100000050002909[%bootstrapFrequency = 71 ]):0.00000100000050002909[%bootstrapFrequency = 86 ],8:0.00000100000050002909):0.058469760360538414[%bootstrapFrequency = 100 ],(((11:0.05422712685579692,((12:0.04194004272414047,13:0.04963719343527671):0.053043206674393[%bootstrapFrequency = 89 ],14:0.030434161907100674):0.22883493239825398[%bootstrapFrequency = 100 ]):0.044493387715287255[%bootstrapFrequency = 87 ],15:0.1364175907200578):0.08879064837261715[%bootstrapFrequency = 100 ],(9:0.005401309546865509,10:0.003972429791784186):0.03548604302040569[%bootstrapFrequency = 97 ]):0.030760974486685425[%bootstrapFrequency = 48 ]):0.05084333916754487[%bootstrapFrequency = 88 ],(2:0.001337050465272954,(1:0.009189761127631518,3:0.004963034877272745):0.0032453485054402893[%bootstrapFrequency = 37 ]):0.027606656835819764[%bootstrapFrequency = 68 ],16:0.38396757791145425)[% ] [% ] [% setBetweenDouble = bootstrapFrequency ]; END; BEGIN TREES; Title Massospora_EFL_MP_Bootstrap_Consensus_tree; ID 0170460d17ff30; LINK Taxa = Taxa; TRANSLATE [0] 1 Massospora_cicadina_GK2, [1] 2 Massospora_cicadina_MC7, [2] 3 Massospora_cicadina_MC17, [3] 4 Massospora_levispora_ML2, [4] 5 Massospora_platypediae_CA3, [5] 6 Massospora_platypediae_NM2, [6] 7 Massospora_platypediae_NM4, [7] 8 Massospora_levispora_ML4, [8] 9 Massospora_tettigatis_PL5042, [9] 10 Massospora_tettigatis_PL373, [10] 11 Entomophthora_muscae_ARSEF3074, [11] 12 Pandora_formicae_v1, [12] 13 Furia_ithacensis_FiMD2, [13] 14 Pandora_neoaphidis_ARSEF7939, [14] 15 Arthrophaga_myriapodina_Arsp1, [15] 16 Massospora_diceroproctae_DB176; TREE 'PAUP_1' = (1:100,2:100,3:100,((4:100,5:100,6:100,7:100,8:100):100,(9:100,10:100):99.593,((11:100,((12:100,13:100):85.167,14:100):100):81.058,15:100):91.367,16:100):100); END; BEGIN TREES; Title 'Massospora EFL MP Majority-Rule Consensus Tree'; ID 0170460d970931; LINK Taxa = Taxa; TRANSLATE [0] 1 Massospora_cicadina_GK2, [1] 2 Massospora_cicadina_MC7, [2] 3 Massospora_cicadina_MC17, [3] 4 Massospora_levispora_ML2, [4] 5 Massospora_platypediae_CA3, [5] 6 Massospora_platypediae_NM2, [6] 7 Massospora_platypediae_NM4, [7] 8 Massospora_levispora_ML4, [8] 9 Massospora_tettigatis_PL5042, [9] 10 Massospora_tettigatis_PL373, [10] 11 Entomophthora_muscae_ARSEF3074, [11] 12 Pandora_formicae_v1, [12] 13 Furia_ithacensis_FiMD2, [13] 14 Pandora_neoaphidis_ARSEF7939, [14] 15 Arthrophaga_myriapodina_Arsp1, [15] 16 Massospora_diceroproctae_DB176; TREE MajRule = (1,2,3,((((4,5,6,7,8)[%bootstrapFrequency = 100 ],(9,10)[%bootstrapFrequency = 100 ])[%bootstrapFrequency = 63.636 ],((11,((12,13)[%bootstrapFrequency = 100 ],14)[%bootstrapFrequency = 100 ])[%bootstrapFrequency = 100 ],15)[%bootstrapFrequency = 100 ])[%bootstrapFrequency = 81.818 ],16)[%bootstrapFrequency = 100 ])[%bootstrapFrequency = 0.0 ] [% ] [% setBetweenDouble = bootstrapFrequency ]; END; BEGIN TREES; Title Massospora_EFL_MP_all_MP_trees; ID 0170460e31d632; LINK Taxa = Taxa; TRANSLATE [0] 1 Massospora_cicadina_GK2, [1] 2 Massospora_cicadina_MC7, [2] 3 Massospora_cicadina_MC17, [3] 4 Massospora_levispora_ML2, [4] 5 Massospora_platypediae_CA3, [5] 6 Massospora_platypediae_NM2, [6] 7 Massospora_platypediae_NM4, [7] 8 Massospora_levispora_ML4, [8] 9 Massospora_tettigatis_PL5042, [9] 10 Massospora_tettigatis_PL373, [10] 11 Entomophthora_muscae_ARSEF3074, [11] 12 Pandora_formicae_v1, [12] 13 Furia_ithacensis_FiMD2, [13] 14 Pandora_neoaphidis_ARSEF7939, [14] 15 Arthrophaga_myriapodina_Arsp1, [15] 16 Massospora_diceroproctae_DB176; TREE 'PAUP_1' = (1,2,(3,((((4,5,6,7,8),(9,10)),((11,((12,13),14)),15)),16))); TREE 'PAUP_2' = (1,(2,((((4,5,6,7,8),(9,10)),((11,((12,13),14)),15)),16)),3); TREE 'PAUP_3' = (1,2,(3,((4,5,6,7,8),((9,10),(((11,((12,13),14)),15),16))))); TREE 'PAUP_4' = (1,(2,((4,5,6,7,8),((9,10),(((11,((12,13),14)),15),16)))),3); TREE 'PAUP_5' = (1,(2,3),((4,5,6,7,8),((9,10),(((11,((12,13),14)),15),16)))); TREE 'PAUP_6' = (1,(2,3),((((4,5,6,7,8),(9,10)),((11,((12,13),14)),15)),16)); TREE 'PAUP_7' = (1,2,(3,(((4,5,6,7,8),((9,10),((11,((12,13),14)),15))),16))); TREE 'PAUP_8' = (1,2,(3,(((((4,5,6,7),8),(9,10)),((11,((12,13),14)),15)),16))); TREE 'PAUP_9' = (1,2,(3,((((4,5,6,7),8),((9,10),((11,((12,13),14)),15))),16))); TREE 'PAUP_10' = (1,2,(3,(((((4,5,6,8),7),(9,10)),((11,((12,13),14)),15)),16))); TREE 'PAUP_11' = (1,2,(3,(((((4,5,7,8),6),(9,10)),((11,((12,13),14)),15)),16))); TREE 'PAUP_12' = (1,(2,(((((4,5,6,7),8),(9,10)),((11,((12,13),14)),15)),16)),3); TREE 'PAUP_13' = (1,(2,(((4,5,6,7),8),((9,10),(((11,((12,13),14)),15),16)))),3); TREE 'PAUP_14' = (1,2,(3,(((4,5,6,7),8),((9,10),(((11,((12,13),14)),15),16))))); TREE 'PAUP_15' = (1,(2,3),(((4,5,6,7),8),((9,10),(((11,((12,13),14)),15),16)))); TREE 'PAUP_16' = (1,(2,3),(((((4,5,6,7),8),(9,10)),((11,((12,13),14)),15)),16)); TREE 'PAUP_17' = (1,(2,((((4,5,6,7),8),((9,10),((11,((12,13),14)),15))),16)),3); TREE 'PAUP_18' = (1,(2,(((4,5,6,7,8),((9,10),((11,((12,13),14)),15))),16)),3); TREE 'PAUP_19' = (1,(2,(((((4,5,7,8),6),(9,10)),((11,((12,13),14)),15)),16)),3); TREE 'PAUP_20' = (1,(2,(((((4,5,6,8),7),(9,10)),((11,((12,13),14)),15)),16)),3); TREE 'PAUP_21' = (1,(2,3),(((4,5,6,7,8),((9,10),((11,((12,13),14)),15))),16)); TREE 'PAUP_22' = (1,(2,3),((((4,5,6,7),8),((9,10),((11,((12,13),14)),15))),16)); TREE 'PAUP_23' = (1,(2,3),(((((4,5,7,8),6),(9,10)),((11,((12,13),14)),15)),16)); TREE 'PAUP_24' = (1,(2,3),(((((4,5,6,8),7),(9,10)),((11,((12,13),14)),15)),16)); TREE 'PAUP_25' = (1,2,(3,((((((4,5,8),6),7),(9,10)),((11,((12,13),14)),15)),16))); TREE 'PAUP_26' = (1,2,(3,((((((4,5,8),7),6),(9,10)),((11,((12,13),14)),15)),16))); TREE 'PAUP_27' = (1,2,(3,(((((4,5,8),6,7),(9,10)),((11,((12,13),14)),15)),16))); TREE 'PAUP_28' = (1,(2,((((((4,5,8),6),7),(9,10)),((11,((12,13),14)),15)),16)),3); TREE 'PAUP_29' = (1,(2,3),((((((4,5,8),6),7),(9,10)),((11,((12,13),14)),15)),16)); TREE 'PAUP_30' = (1,(2,(((((4,5,8),6,7),(9,10)),((11,((12,13),14)),15)),16)),3); TREE 'PAUP_31' = (1,(2,((((((4,5,8),7),6),(9,10)),((11,((12,13),14)),15)),16)),3); TREE 'PAUP_32' = (1,(2,3),((((((4,5,8),7),6),(9,10)),((11,((12,13),14)),15)),16)); TREE 'PAUP_33' = (1,(2,3),(((((4,5,8),6,7),(9,10)),((11,((12,13),14)),15)),16)); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1581723346048; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3751813664487346728; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 687642647781469321; mqVersion 360; checksumv 0 3 4044595971 null getNumChars 449 numChars 449 getNumTaxa 16 numTaxa 16 short true bits 15 states 15 sumSquaresStatesOnly 141257.0 sumSquares 141257.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 335; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 755 472; setLocation 198 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #687642647781469321 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 420 400; setLocation 198 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;