#NEXUS [written Tue Aug 31 17:02:16 CEST 2021 by Mesquite version 3.70 (build 940) at 201715inchMBP/192.168.2.86] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=24; TAXLABELS Cyathicula_cyathoideum_MK584998.1 Hymenotorrendiella_indonesiana_CPC_15068 Hymenotorrendiella_indonesiana_CPC_35834 Hymenotorrendiella_indonesiana_DQ195789.1 Hymenotorrendiella_indonesiana_DQ195788.1 Hymenotorrendiella_indonesiana_DQ195787.1 Hymenotorrendiella_indonesiana_CPC_35835 Hymenotorrendiella_sp._CPC_19413 Hymenotorrendiella_communis_CPC_32835 Hymenotorrendiella_communis_CPC_19411 Hymenotorrendiella_communis_CPC_36006 Hymenotorrendiella_communis_CPC_32123 Hymenotorrendiella_communis_CPC_36076 Hymenotorrendiella_eucalypti_MH578483.1 Hymenotorrendiella_eucalypti_AY755335.1 Hymenotorrendiella_andina_KJ606682.1 Hymenotorrendiella_madsenii_AY755336.1 Hymenotorrendiella_madsenii_MH578486.1 Hymenotorrendiella_brevisetosa_JN225946.1 Hymenotorrendiella_cannibalensis_JN225947.1 Hymenotorrendiella_dingleyae_MH578484.1 Hymenotorrendiella_dingleyae_MK039692.1 Hymenotorrendiella_dingleyae_JN225945.1 Hymenotorrendiella_dingleyae_MH578485.1 ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "FigFP1057_HymenotorrendiellaITS.nexus"'; DIMENSIONS NCHAR=908; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Cyathicula_cyathoideum_MK584998.1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gtgtaacaaggtttccgtaggtgaacctgcggaaggatcattacagtgttccctgccctcacgggtagaaa-cgcccaccc--ttgtataatata-t-cttgttgctttggca-ggccgccctcgggcaccggctccggctggatcgtgcctgccagagga-ccccaaactctgaatgttagtgtcgtctgagtactatataatagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccgtggtattccgcggggcatgcctgttcgagcgtcatttaaaccaa----tccagcttgctgggtcttgggcttcgcctccgggcgggccttaaaatcagtggcggcgcctctcggctctaagcgtagt-aatactcctcgctacagagtcccgggtggatg-cttgccaacaacccccaattttatcaggttgacctcggatcaggtagggatacccgctgaacttaagcatatcataa---------- Hymenotorrendiella_indonesiana_CPC_15068 -------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTGGGGCCAGTGTTAATTACAC-TGGGGGTCACAACCTGTTAGGATGAACAATAGGCGATCCGCAGCGAACCCCTAAGGCTTAGGCTACGGGGTGCGTCCACAGACTAGGTGGTCATGGGCCTCAGTGAGGTTTAAGATATAGTCGGGCCTCTTA-GGCAACTAAGAGTAATACTG-TTCCGTAGGTGAACCTGCGGAAGGATCATTACAGAGTT-CCTGCCCTCACGGGTAGAAA-CCCCCACCCTTGTGTATATTATA---CTTGTTGCTTTGACAGGGCCGCCTTTGGGCGCTGGCTTCGGCTGTGCTGTGCCTGTCAGAGAA-CCCCAAACTCTGAATGTTAGTGTCGTCTGAGTACTATACAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTTACACCAACTCCTACTTCGTGTAGGGTCTTGGGCTTCGCCTCTGGGCGGGCCTCAAAATCAGTGGCGGCGCCATCTGGCTCTAAGCGTAGT-AAATCTCCTCGCTATAGAAACCAGT-TGGTCGTCTTGCCAGTAACCCCAAATCTTT-CAGGTTGACCTCG-------------------------------------------------- Hymenotorrendiella_indonesiana_CPC_35834 -------------------------CCTTTGCAGCCTCGCAAGAGGTGCCCCAACGACTATAAAGAATTGGAGCCATGGTGCAAGTCTGCCCTTGTGGTAGGCGACATGACCGAATTGCGGGAAGCCTTAAGGCCTAACAGTACCAACCAATGGCGGAAACGCCGCTGGGGCCAGTGTTAATTACAC-TGGGGGTCACAACCTGTTAGGATGAACAATAGGCGATCCGCAGCGAACCCCTAAGGCTTAGGCTACGGGGTGCGTCCACAGACTAGGTGGTCATGGGCCTCAGTGAGGTTTAAGATATAGTCGGGCCTCTTA-GGCAACTAAGAGTAATACTG-TTCCGTAGGTGAACCTGCGGAAGGATCATTACAGAGTT-CCTGCCCTCACGGGTAGAAA-CCCCCACCCTTGTGTATATTATA---CTTGTTGCTTTGACAGGGCCGCCTTTGGGCGCTGGCTTCGGCTGTGCTGTGCCTGTCAGAGAA-CCCCAAACTCTGAATGTTAGTGTCGTCTGAGTACTATACAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTTACACCAACTCCTACTTCGTGTAGGGTCTTGGGCTTCGCCTCTGGGCGGGCCTCAAAATCAGTGGCGGCGCCATCTGGCTCTAAGCGTAGT-AAATCTCCTCGCTATAGAAACCAGT-TGGTCGTCTTGCCAGTAACCCCAAATC-TT-CAGGTTGACCTCG-------------------------------------------------- Hymenotorrendiella_indonesiana_DQ195789.1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------aaggatcattacagagtt-cctgccctcacgggtagaaa-cccccacccttgtgtatattattatacttgttgctttgacagggccgcctttgggcgctggcttcggctgtgctgtgcctgtcagagaa-ccccaaactctgaatgttagtgtcgtctgagtactatacaatagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcatttacaccaactcctacttcgtgtagggtcttgggcttcgcctctgggcgggcctcaaaatcagtggcggcgccatctggctctaagcgtagtaaaatctcctcgctatagaaaccagt-tggtcgtcttgccagtaaccccaaatcttt-caggttgacctcg-------------------------------------------------- Hymenotorrendiella_indonesiana_DQ195788.1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------aaggatcattacagagtt-cctgccctcacgggtagaaa-cccccacccttgtgtatattattatacttgttgctttgacagggccgcctttgggcgctggcttcggctgtgctgtgcctgtcagagaa-ccccaaactctgaatgttagtgtcgtctgagtactatacaatagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcatttacaccaactcctacttcgtgtagggtcttgggcttcgcctctgggcgggcctcaaaatcagtggcggcgccatctggctctaagcgtagtaaaatctcctcgctatagaaaccagt-tggtcgtcttgccagtaaccccaaatcttt-caggttgacctcg-------------------------------------------------- Hymenotorrendiella_indonesiana_DQ195787.1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------aaggatcattacagagtt-cctgccctcacgggtagaaa-cccccacccttgtgtatattattatacttgttgctttgacagggccgcctttgggcgctggcttcggctgtgctgtgcctgtcagagaa-ccccaaactctgaatgttagtgtcgtctgagtactatacaatagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcatttacaccaactcctacttcgtgtagggtcttgggcttcgcctctgggcgggcctcaaaatcagtggcggcgccatctggctctaagcgtagtaaaatctcctcgctatagaaaccagt-tggtcgtcttgccagtaaccccaaatcttt-caggttgacctcg-------------------------------------------------- Hymenotorrendiella_indonesiana_CPC_35835 -------------------------cctttgcagcctcgc-agaggtgccccaacgactataaagaattggagccatggtgcaagtctgcccttgtggtaggcgacatgaccgaattgcgggaagccttaaggcctaacagtaccaaccaatggcggaaacgccgctggggccagtgttaattacac-tgggggtcacaacctgttaggatgaacaataggcgatccgcagcgaacccctaaggcttaggctacggggtgcgtccacagactaggtggtcatgggcctcagtgaggtttaagatatagtcgggcctctta-ggcaactaagagtaatactg-ttccgtaggtgaacctgcggaaggatcattacagagtt-cctgccctcacgggtagaaa-cccccacccttgtgtatattattatacttgttgctttgacagggccgcctttgggcgctggcttcggctgtgctgtgcctgtcagagaa-ccccaaactctgaatgttagtgtcgtctgagtactatacaatagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcatttacaccaactcctacttcgtgtagggtcttgggcttcgcctctgggcgggcctcaaaatcagtggcggcgccatctggctctaagcgtagtaaaatctcctcgctatagaaaccagt-tggtcgtcttgccagtaaccccaaatc-tt-caggttgacctcg-------------------------------------------------- Hymenotorrendiella_sp._CPC_19413 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGAACCTGCGGAAGGATCATTACAGAGTT-CCTGCCCTCACGGGTAGAAACCCCCCACCCTTGTGTATGTTATA---CTTGTTGCTTTGACA-GGCCGCCTTCGGGCGCTGGCTTCGGCTGTGCTGTGCCTGTCAGAGAA-CCCCAAACTCTGAATGTTAGTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTTACACCAACTCCTACTTCGTGTAGGGTCTTGGGCTTCGCCTTTGGGCGTGCCTCAAAATCAGTGGCGGCGCCATCTGGCTCTAAGCGTAGT-AAATCTCCTCGCTATAGAAACCAGA-CGGTAGTCTTGCCAGTAACCCCAAATTTCTTAGGGTTGACCTCG-------------------------------------------------- Hymenotorrendiella_communis_CPC_32835 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGAACCCCTAAGGCTCAGGCTACGGGGTGCGTCCACAGACTAGGTGGTCATGGGCCTCAGTGAGGTTTAAGATATAGTCGGGTCTCTTG-GGCAACTAAGAGTGATACTG-TTCCGTAGGTGAACCTGCGGAAGGATCATTACAGAGTT-CCTGCCCTCACGGGTAGAAA--CCCCACCCTTGTGTATATTATA---CTTGTTGCTTTGACA-GGCCGCCTTCGGGCGCTGGCTTCGGCTGTGCTGTGCCTGTCAGAGAA-CCCCAAACTCTGAATGTTAGTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCAGGGGGCATGCCTGTTCGAGCGTCATTTACACCAACTCCTACTTCGTGTAGGGTCTTGGGCTTCGCCTCTGGGCGGGCCTCAAAATCAGTGGCGGCGCCATCTGGCTCTAAGCGTAGT-AAATCTCCTCGCTATAGAGACC????????????????????????????????????????????????-------------------------------------------------- Hymenotorrendiella_communis_CPC_19411 -------------------------CCTTTGCAGCCTCGCAAGAGGTGCCCCAACGACTCTAAAGAATGGGAGCCTTAGTGCAAGTCTGCCCCTGTGGTAGGCGACATGATCGAATTGCGGGAAGCCTTAAGGCCTGACAGTACCAACCAACGGTGGAAACACCGCTGGGGCCAGTGTTAACTACACTTGGGGGTCACAACCTGTCAGGATGTACAATAGGCGATCCGCAGCGAACCCCTAAGGCTCAGGCTACGGGGTGCGTCCACAGACTAGGTGGTCATGGGCCTCAGTGAGGTTTAAGATATAGTCGGGTCTCTTG-GGCAACTAAGAGTGATACTG-TTCCGTAGGTGAACCTGCGGAAGGATCATTACAGAGTT-CCTGCCCTCACGGGTAGAAA--CCCCACCCTTGTGTATATTATA---CTTGTTGCTTTGACA-GGCCGCCTTCGGGCGCTGGCTTCGGCTGTGCTGTGCCTGTCAGAGAA-CCCCAAACTCTGAATGTTAGTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCAGGGGGCATGCCTGTTCGAGCGTCATTTACACCAACTCCTACTTCGTGTAGGGTCTTGGGCTTCGCCTCTGGGCGGGCCTCAAAATCAGTGGCGGCGCCATCTGGCTCTAAGCGTAGT-AAATCTCCTCGCTATAGAGACCCGG-TGGTAGTCTTGCCAGTAACCCCAAATTTTT-CAGGTTGACCTCG-------------------------------------------------- Hymenotorrendiella_communis_CPC_36006 -------------------------CCTTTGCAGCCTCGCAAGAGGTGCCCCACCGACTCTAAAGAATTGGAGCCATAGTGCAAGTCTGCCCCTGTGGTAGGCGACATGATCGAATTGCGGGAAGCCTTAAGGCCTGACGGTACCAACCAACGGTGGAAACACCGCTGGGGCCAGTGTTAATTACAC-TGGGGGTCACAACCTGTCAGGATGTACAATAGGCGATCCGCAGCGAACCCCTAAGGCTCAGGCTACGGGGTGCGTCCACAGACTAGGTGGTCATGGGCCTCGTTGAGGTTTAAGATATAGTCGGGTCTCTTG-GGCAACTAAGAGTGATACTG-TTCCGTAGGTGAACCTGCGGAAGGATCATTACAGAGTT-CCTGCCCTCACGGGTAGAAA--CCCCACCCTTGTGTATATTATA---CTTGTTGCTTTGACA-GGCCGCCTTCGGGCGCTGGCTTCGGCTGTGCTGTGCCTGTCAGAGAA-CCCCAAACTCTGAATGTTAGTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCAGGGGGCATGCCTGTTCGAGCGTCATTTACACCAACTCCTACTTCGTGTAGGGTCTTGGGCTTCGCCTTTAGGCGGGCCTCAAAATCAGTGGCGGCGCCATCTGGCTCTAAGCGTAGT-AAATCTCCTCGCTATAGAGACCCGG-TGGTAGTCTTGCCAGTAACCCCCAAATTTT-CAGGTTGACCTCG-------------------------------------------------- Hymenotorrendiella_communis_CPC_32123 --------------------------------------------------------------------------------GCAAGTCTGCCCCTGTGGTAGGCGACATGATCGAATTGCGGGAAGCCTTAAGGCCTGACGGTACCAACCAACGGTGGAAACACCGCTGGGGCCAGTGTTAATTACAC-TGGGGGTCACAACCTGTCAGGATGTACAATAGGCGATCCGCAGCGAACCCCTAAGGCTCAGGCTACGGGGTGCGTCCACAGACTAGGTGGTCATGGGCCTCGTTGAGGTTTAAGATATAGTCGGGTCTCTTG-GGCAACTAAGAGTGATACTG-TTCCGTAGGTGAACCTGCGGAAGGATCATTACAGAGTT-CCTGCCCTCACGGGTAGAAA--CCCCACCCTTGTGTATATTATA---CTTGTTGCTTTGACA-GGCCGCCTTCGGGCGCTGGCTTCGGCTGTGCTGTGCCTGTCAGAGAA-CCCCAAACTCTGAATGTTAGTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCAGGGGGCATGCCTGTTCGAGCGTCATTTACACCAACTCCTACTTCGTGTAGGGTCTTGGGCTTCGCCTTTAGGCGGGCCTCAAAATCAGTGGCGGCGCCATCTGGCTCTAAGCGTAGT-AAATCTCCTC????????????????????????????????????????????????????????????-------------------------------------------------- Hymenotorrendiella_communis_CPC_36076 ---------------------------TTTGCAGCCTCGCAAGAGGTGCCCCACCGACTCTAAAGAATTGGAGCCATAGTGCAAGTCTGCCCCTGTGGTAGGCGACATGATCGAATTGCGGGAAGCCTTAAGGCCTGACGGTACCAACCAACGGTGGAAACACCGCTGGGGCCAGTGTTAATTACAC-TGGGGGTCACAACCTGTCAGGATGTACAATAGGCGATCCGCAGCGAACCCCTAAGGCTCAGGCTACGGGGTGCGTCCACAGACTAGGTGGTCATGGGCCTCGTTGAGGTTTAAGATATAGTCGGGTCTCTTG-GGCAACTAAGAGTGATACTG-TTCCGTAGGTGAACCTGCGGAAGGATCATTACAGAGTT-CCTGCCCTCACGGGTAGAAA--CCCCACCCTTGTGTATATTATA---CTTGTTGCTTTGACA-GGCCGCCTTCGGGCGCTGGCTTCGGCTGTGCTGTGCCTGTCAGAGAA-CCCCAAACTCTGAATGTTAGTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCAGGGGGCATGCCTGTTCGAGCGTCATTTACACCAACTCCTACTTCGTGTAGGGTCTTGGGCTTCGCCTTTAGGCGGGCCTCAAAATCAGTGGCGGCGCCATCTGGCTCTAAGCGTAGT-AAATCTCCTCGCTATAGAGACCCGG-TGGTAGTCTTGCCAGTAACCCCAAA--TTT-CAGGTTGACCTCG-------------------------------------------------- Hymenotorrendiella_eucalypti_MH578483.1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cattacagagtt-cctgccctcacgggtagaaa--ccccacccttgtgtatgttatg---tttgttgctttgaca-ggccgccttcgggcgctggcttcggctgtgctgtgcctgtcggagaa-cccccaactctgaatgtttgtgtcgtctgagtactatataatagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattcctaggggcatgcctgttcgagcgtcatttacaccaactcctacctcgtgtagggtcttgggcttcgcctccgggcgggcctcaaaatcagtggcggcgccatctggctctaagcgtagt-aaatctcctcgctatagaacccaga-gggtggtccagccagtaaccccaaattttttatggttgacctcggatcaggtagggatacccgctgaacttaagcatatcaata---------- Hymenotorrendiella_eucalypti_AY755335.1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cattacagagtt-cctgccctcacgggtagaaa--ccccacccttgtgtatgttatg---tttgttgctttgaca-ggccgccttcgggcgctggcttcggctgtgctgtgcctgtcggagaa-cccccaactctgaatgtttgtgtcgtctgagtactatataatagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattcctaggggcatgcctgttcgagcgtcatttacaccaactcctacctcgtgtagggtcttgggcttcgcctccgggcgggcctcaaaatcagtggcggcgccatctggctctaagcgtagt-aaatctcctcgctatagaacccaga-gggtggtccagccagtaaccccaaattttttatggttgacctcgg------------------------------------------------- Hymenotorrendiella_andina_KJ606682.1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ccc-ttccgtaggtgaacctgcggaaggatcattacagagtt-cctgccctcacgggtagaaa--ccccacccttgtgtatgttatg---tttgttgctttgaca-ggctgccttcgtgcgctggcttcggctgtgttgtgcctgtcagagaa-cccccaactctgaatgttagtgtcgtctgagtactatataatagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcatatacaccaactcctacttcgtgtagggtcttgggcttcgcctctgggcgggcctcaaaatcagtggcggcgccatctggctctaagcgtagt-aaatctcctcgctacagaaaccaga-cggtcgtcttgccagtaaccccaaatttattaaggttgacctcggatcaggtagggatacccgctgaacttaagcatatcaataagcggaggaa Hymenotorrendiella_madsenii_AY755336.1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cattacagagtt-cctgccctcacgggtagaaa--ccccacccttgtgtatgttatg---tttgttgctttgaca-ggccgccttcgggccctggcttcggctaggctgcgcctgtcagagaa-cccccaactctgaatgttagtgtcgtctgagtactatataatagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcatatacaccaactcctacttcgtgtagggtcttgggcttcgcctctgggcgggcctcaaaatcagtggcggcgccatctggctctgagcgtagt-aaatctcctcgctatagaacccaga-aggttagctggccagtaaccccaaattctt-agggttgacctcgg------------------------------------------------- Hymenotorrendiella_madsenii_MH578486.1 -----------tctgcttgctgaagcctctgcggccccgcaaggggtgccccaacgactctaaagaatcggagccttagcgcaagtctgccttcgtggtaggcgacatgatcgaattgcggggagccttaaggcctgacagtaccaaccgcctgtggaaacgcagtcggggccagtgttaatcgcac-tgggggttataacctgccaggatgtacaataggcgatccgcagcgaacccctaaggcaatagctacggggagcgtccacagactaggtggtcatgggcctcagcgaggtttaagatatagtcgggtctcttgggatgaccaagagtgatactg-ttccgtaggtgaacctgcggaaggatcattacagagtt-cctgccctcacgggtagaaa--ccccacccttgtgtatgttatg---tttgttgctttgaca-ggccgccttcgggccctggcttcggctaggctgcgcctgtcagagaaccccccaactctgaatgttagtgtcgtctgagtactatataatagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcatatacaccaactcctactccgtgtagggtattgggcttcgcctctgggcgggcctcaaaatcagtggcggcgccatctggctctgagcgtagt-aaatctcctcgctatagaacccaga-aggttagctggccagtaaccccaaattctt-aggg?????????-------------------------------------------------- Hymenotorrendiella_brevisetosa_JN225946.1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tccgtaggtgaacctgcggaaggatcattacagagtt-cctgccctcacgggtagaaa--ccccacccttgtgtatgttatg---tttgttgctttgaca-ggacgccttcgggccctggcttcggctaggctgtgcctgtcagagaa-cccccaactctgaatgttagtgtcgtctgagtactatataatagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgctccttggtattccgaggagcatgcctgttcgagcgtcattaataccaactcctacttcgtgtagggtcttgggcttcgcctctgggcgggcctcaaaatcagtggcggcgccatctggctctaagcgtagt-aaatctcctcgctatagaattcaga-aggttagcttgccagcaaccccaaattttt-taggttgacctcggatcaggtagggatacccgctgaacttaagcatatc-------------- Hymenotorrendiella_cannibalensis_JN225947.1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tccgtaggtgaacctgcggaaggatcattacagagtt-cctgccctcacgggtagaaa--ccccacccttgtgtatgttata---tttgttgctttgaca-ggccgccttcgggccctggcttcggctaggctgcgcctgtcagagaa-cccccaactctgaatattagtgtcgtctgagtactatataatagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattcctaggggcatgcctgttcgagcgtcattataaccacctcctacttcgtgtagggtcttgggcttcgtctccgggcgggcctcaaaatcagtggcggcgccatctggctctaagcgtagt-aaatatcctcgctatagaacccagg-tggttgtcttgccagtaaccccaaattatttcaggttgacctcggatcaggtagggatacccgctgaacttaagcatatc-------------- Hymenotorrendiella_dingleyae_MH578484.1 ------tgagctctgcttgctg-agcctgtgcagcctcgcaagaggtgccccaacgactctaaagaactggagccttagtgcaagtctacc--tgtggtaggcgacatgatcgaattgcggggagccttaaggcccaacagtaccaaccgcctgtggaaacgcagtcggggccagtgttaatcacat-tggaggttacaacctgttgggatggacaataggcgatccgcagcgaacccctaaggcat-agctacggggtgcgtccacagactaagtggtcatgggcctcactgaggtttaagatatagtcgggtctcttgggacgaccaagagtgatactg-ttccgtaggtgaacctgcggaaggatcattacagagtt-cctgcccgaaagggtagaaa--ccccacccttgtgtatgttata---cttgttgctttgaca-ggccgccttcgggtcatggcttcggctatgctgtgcctgtcagagaa-cccccaactctgaatgttagtgtcgtctgagtactatataatagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattagcaccaactcctacctagtgtagggtcttgggcttcgcctccgggcgggcctcaaaatcagtggcggcgccctctggctctaagcgtagt-aaatctcctcgctatagaacccaga-aggttgtcttgccagtaaccccaatttttttagggttgac????-------------------------------------------------- Hymenotorrendiella_dingleyae_MK039692.1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tccgtaggtgaacctgcggaaggatcattacagagtt-cctgcccgaaagggtagaaa--ccccacccttgtgtatgttata---cttgttgctttgaca-ggccgccttcgggtcatggcttcggctatgctgtgcctgtcagagaa-cccccaactctgaatgttagtgtcgtctgagtactatataatagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattagcaccaactcctacctagtgtagggtcttgggcttcgtctccgggcgggcctcaaaatcagtggcggcgccctctggctctaagcgtagt-aaatctcctcgctatggaacccaga-aggttgtcttgccagtaaccccaaattttttagggttgacctcggatcaggtagggatacccgctgaacttaagcatatcaa------------ Hymenotorrendiella_dingleyae_JN225945.1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tccgtaggtgaacctgcggaaggatcattacagagtt-cctgcccgaaagggtagaaa--ccccacccttgtgtatgttata---cttgttgctttgaca-ggccgccttcgggtcatggcttcggctatgctgtgcctgtcagagaa-cccccaactctgaatgttagtgtcgtctgagtactatataatagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattagcaccaactcctacctagtgtagggtcttgggcttcgtctccgggcgggcctcaaaatcagtggcggcgccctctggctctaagcgtagt-aaatctcctcgctatggaacccaga-aggttgtcttgccagtaaccccaaattttttagggttgacctcggatcaggtagggatacccgctgaacttaagcatatcaata---------- Hymenotorrendiella_dingleyae_MH578485.1 ttccggtgagctctgcttactgaagcctgtgcagcctcgcaagaggtgccccaacgactctaaagaattggagccttagtgcaagtctacc--tgtggtaggcgacatgatcgaattgcggggagccttaaggcccaacagtaccaaccgcctgtggaaacgcagccggggccagtgttaatcacac-tggaggttataacctgttgggatggacaataggcgatccgcagcgaacccctaaggcat-tgctacggggtgcgtccacagactaagtggtcatgggcctcgctgaggtttaagatatagtcgggtctcttgggacgaccaagagtgatactg-ttccgtaggtgaacctgcggaaggatcattacagagtt-cctgcccgaaagggtagaaa--ccccacccttgtgtatgttata---cttgttgctttgaca-ggccgccttcgggtcatggcttcggctatgctgtgcctgtcagagaa-cccccaactctgaatgttagtgtcgtctgagtactatataatagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattagcaccaactcctacctagtgtagggtcttgggcttcgtctccgggcgggcctcaaaatcagtggcggcgccctctggctctaagcgtagt-aaatctcctcgctatggaacccaga-aggttgtcttgccagtaaccccaaattttttagggt????????-------------------------------------------------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 908; END; BEGIN PAUP; LOG start = yes append = yes; set autoclose = yes warnreset = no torder = right; OUTGROUP outgroups / only; exclude 1 - . / only; include combined / only; SET CRITERION = distance maxtrees = 1000 increase = no storebrlens = yes outroot = paraphyl; DSet distance = p; NJ breakties = random brlens = yes showtree = yes; Savetrees from = 1 to = 1 format = nexus brlens = yes maxdecimals = 6 file = HymenotorrendiellaITSuncorrectedp.tre; Bootstrap nreps = 1000 search = nj; Savetrees from = 1 to = 1 file = HymenotorrendiellaITSuncorrectedpbs.tre format = nexus brlens = yes savebootp = nodelabels maxdecimals = 0; DSet distance = k2p; NJ breakties = random brlens = yes showtree = yes; Savetrees from = 1 to = 1 format = nexus brlens = yes maxdecimals = 6 file = HymenotorrendiellaITSkimura2p.tre; Bootstrap nreps = 1000 search = nj; Savetrees from = 1 to = 1 format = nexus brlens = yes savebootp = nodelabels maxdecimals = 0 file = HymenotorrendiellaITSkimura2pbs.tre; DSet distance = hky85; NJ breakties = random brlens = yes showtree = yes; Savetrees from = 1 to = 1 format = nexus brlens = yes maxdecimals = 6 file = HymenotorrendiellaITShky85.tre; Bootstrap nreps = 1000 search = nj; Savetrees from = 1 to = 1 format = nexus brlens = yes savebootp = nodelabels maxdecimals = 0 file = HymenotorrendiellaITShky85bs.tre; SET CRITERION = parsimony maxtrees = 1000 increase = no storebrlens = yes outroot = paraphyl; Pset gapmode = newstate; HSEARCH ADDSEQ = random NREPS = 100 SWAP = TBR; roottrees ROOT = OUTGROUP OUTROOT = MONOPHYL; Savetrees format = nexus brlens = yes maxdecimals = 0 file = HymenotorrendiellaITSparsimony.trees; PSCORES 1 / TL = yes CI = yes RI = yes RC = yes HI = yes; Contree ALL / strict = yes treefile = HymenotorrendiellaITSparsimonycons.tre; Bootstrap nreps = 1000 search = heuristic; Savetrees from = 1 to = 1 format = nexus brlens = yes savebootp = nodelabels maxdecimals = 0 file = HymenotorrendiellaITSparsimonybootstrap.tre; Log stop = yes; END; BEGIN SETS; CHARSET combined = 369- 798; TAXSET outgroups = 1; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 908; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 908; END; BEGIN TREES; Title 'Trees from "FigFP1057_HymenotorrendiellaITSparsimony.trees"'; ID 017b9cb8a5631; LINK Taxa = Taxa; TRANSLATE [0] 1 Cyathicula_cyathoideum_MK584998.1, [1] 2 Hymenotorrendiella_indonesiana_CPC_15068, [2] 3 Hymenotorrendiella_indonesiana_CPC_35834, [3] 4 Hymenotorrendiella_indonesiana_DQ195789.1, [4] 5 Hymenotorrendiella_indonesiana_DQ195788.1, [5] 6 Hymenotorrendiella_indonesiana_DQ195787.1, [6] 7 Hymenotorrendiella_indonesiana_CPC_35835, [7] 8 Hymenotorrendiella_sp._CPC_19413, [8] 9 Hymenotorrendiella_communis_CPC_32835, [9] 10 Hymenotorrendiella_communis_CPC_19411, [10] 11 Hymenotorrendiella_communis_CPC_36006, [11] 12 Hymenotorrendiella_communis_CPC_32123, [12] 13 Hymenotorrendiella_communis_CPC_36076, [13] 14 Hymenotorrendiella_eucalypti_MH578483.1, [14] 15 Hymenotorrendiella_eucalypti_AY755335.1, [15] 16 Hymenotorrendiella_andina_KJ606682.1, [16] 17 Hymenotorrendiella_madsenii_AY755336.1, [17] 18 Hymenotorrendiella_madsenii_MH578486.1, [18] 19 Hymenotorrendiella_brevisetosa_JN225946.1, [19] 20 Hymenotorrendiella_cannibalensis_JN225947.1, [20] 21 Hymenotorrendiella_dingleyae_MH578484.1, [21] 22 Hymenotorrendiella_dingleyae_MK039692.1, [22] 23 Hymenotorrendiella_dingleyae_JN225945.1, [23] 24 Hymenotorrendiella_dingleyae_MH578485.1; TREE PAUP_1 = ((((((16:3.0,((17:0.0,18:3.0):2.0,(19:4.0,(20:7.0,((22:0.0,23:0.0,24:0.0):0.0,21:1.0):10.0):4.0):2.0):3.0):1.0,(14:0.0,15:0.0):5.0):3.0,((11:0.0,12:0.0,13:0.0):2.0,9:0.0,10:0.0):3.0):1.0,8:3.0):1.0,((4:0.0,5:0.0,6:0.0,7:0.0):5.0,2:0.0,3:0.0):3.0):20.0,1:20.0):0.0; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1630422136065; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7872105524610600253; tell It; setDefaultOrder 23 14 15 3 4 5 6 16 12 13 9 10 11 1 2 0 7 8 17 18 21 19 20 22; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3503320342178089709; mqVersion 370; checksumv 0 3 2072913483 null getNumChars 908 numChars 908 getNumTaxa 24 numTaxa 24 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 334938.0 sumSquares -6.09895475937022E21 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 259; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1084 792; setLocation 823 122; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #7872105524610600253 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #7872105524610600253; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 825 720; setLocation 823 122; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7872105524610600253 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 017b9cb8a5631; toggleUseWeights off; endTell; setAssignedID 1011.1630421955201.2885183706701927523; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 825 720; setLocation 823 122; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; setSelectedTaxonHighlightMode 1; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; setTaxonNameStyler #mesquite.trees.NoColorForTaxon.NoColorForTaxon; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(1:20.0,((2:0.0,3:0.0,(4:0.0,5:0.0,6:0.0,7:0.0):5.0):3.0,(8:3.0,((9:0.0,10:0.0,(11:0.0,12:0.0,13:0.0):2.0):3.0,((14:0.0,15:0.0):5.0,(16:3.0,((17:0.0,18:3.0):2.0,(19:4.0,(20:7.0,(21:1.0,(22:0.0,23:0.0,24:0.0):0.0):10.0):4.0):2.0):3.0):1.0):3.0):1.0):1.0):20.0):0.0;'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow bootstrapFrequency; toggleShow posteriorProbability; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3503320342178089709 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 825 720; setLocation 823 122; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleColorOnlyTaxonNames off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;