#NEXUS [written Tue Jan 12 21:38:18 SGT 2021 by Mesquite version 3.61 (build 927) at NoPsechrids.local/10.1.28.245] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=30; TAXLABELS Colletotrichum_gloeosporioides_CBS112999T Colletotrichum_karstii_MG11 Colletotrichum_karstii_CML4024 Colletotrichum_karstii_CML4040 Colletotrichum_karstii_MG3 Colletotrichum_karstii_MG5 Colletotrichum_karstii_CORCG6T Colletotrichum_karstii_CBS861.72 Colletotrichum_karstii_CBS106.91 Colletotrichum_karstii_CBS127552 Colletotrichum_karstii_CBS129833 Colletotrichum_karstii_CBS129829 Colletotrichum_karstii_CBS129815 Colletotrichum_boninense_CBS123755T Colletotrichum_torulosum_CBS128544T Colletotrichum_cymbidiicola_IMI347923T Colletotrichum_oncidii_CBS129828T Colletotrichum_beeveri_CBS128527T Colletotrichum_brassicicola_CBS101059T Colletotrichum_colombiense_CBS129818T Colletotrichum_phyllanthi_CBS175.67T colletotrichum_annellatum_CBS129826T Colletotrichum_petchii_CBS378.94T 'Colletotrichum novae-zelandiae CBS_128505T' Colletotrichum_hippeastri_CBS125376T Colletotrichum_parsonsiae_CBS128525T Colletotrichum_brasiliense_CBS128501T Colletotrichum_dacrycarpi_CBS130241T Colletotrichum_constrictum_CBS128504T Colletotrichum_feijoicola_CPC34245T ; END; BEGIN CHARACTERS; TITLE Colletotrichum_GAPDH_CBSC; DIMENSIONS NCHAR=293; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Colletotrichum_gloeosporioides_CBS112999T TTCATTGAGACCAAGTACGCTGTGAGTATCACCCCAC-CTACCCCTCCAAGCTCGACATGACTTCACATCCATCGCCACCACTACCGCTGTCATCCGCATTTCGCCGC----------------------CCGCGGTTAGTACACAAGAA-----GGCCATC----ATGAATTAATGCCAATTGAAATCATGG---GTCGGGACGGCCGGACACATGCTATCACTCATGTCAGCCCCA--------TCTGTCACATTTACTGACTCGCTCTTTACAGGCCTACATGCTCAAGT Colletotrichum_karstii_MG11 TTCATTGACACCAACTACGCTGTGAGTATCACCCCAC-TTACCCCTCCAAGGTCATCATGATATCACGCCC----------C---------CAACCGTCCCTCGCGGC---------------AGGAGCCTTCCAGCCAATGGACACAGATTCCTGGCACAC----AGCACCTGATGCCAGT----------G---GCCGGGACAGTGGGACG-----TGATACTCGT-TTGGCCCAACAAAGCTTCCAAGCACTTTCGCTGACTCGCCATACGCAGGCCTACATGCTCAAGT Colletotrichum_karstii_CML4024 TTCATTGACACCAACTACGCTGTGAGTATCACCCCAC-TTACCCCTCCAAGGTCATCATGATATCACGCCC----------C---------CAACCGCCCCTCGCAGC---------------AGGAGCCTTCCAGCCAATGGACACAGATTCCTGGCACAC----AGCACCTGATGCCAGT----------G---GCCGGGACAGTGGGACG-----TGATACTCGT-TTGGCCCAACAAAGCTTCCAAGCACTTTTGCTGACTCGCCATACGCAGGCCTACATGCTCAAGT Colletotrichum_karstii_CML4040 TTCATTGACACCAACTACGCTGTGAGTATCACCCCAC-TTACCCCTCCAAGGTCATCATGATATCACGCCC----------C---------CAACCGTCCCTCGCGGC---------------AGGAGCCTTCCAGCCAATGGACACAGATTCCTGGCACAC----AGCACCTGATGCCAGT----------G---GCCGGGACAGTGGGACG-----TGATACTCGT-TTGGCCCAACAAAGCTTCCAAGCACTTTCGCTGACTCGCCATACGCAGGCCTACATGCTCAAGT Colletotrichum_karstii_MG3 TTCATTGACACCAACTACGCTGTGAGTATCACCCCAC-TTACCCCTCCAAGGTCATCATGATATCACGCCC----------C---------CAACCGTCCCTCGCGGC---------------AGGAGCCTTCCAGCCAATGGACACAGATTCCTGGCACAC----AGCACCTGATGCCAGT----------G---GCCGGGACAGTGGGACG-----TGATACTCGT-TTGGCCCAACAAAGCTTCCAAGCACTTTCGCTGACTCGCCATACGCAGGCCTACATGCTCAAGT Colletotrichum_karstii_MG5 TTCATTGACACCAACTACGCTGTGAGTATCACCCCAC-TTACCCCTCCAAGGTCATCATGATATCACGCCC----------C---------CAACCGTCCCTCGCGGC---------------AGGAGCCTTCCAGCCAATGGACACAGATTCCTGGCACAC----AGCACCTGATGCCAGT----------G---GCCGGGACAGTGGGACG-----TGATACTCGT-TTGGCCCAACAAAGCTTCCAAGCACTTTCGCTGACTCGCCATACGCAGGCCTACATGCTCAAGT Colletotrichum_karstii_CORCG6T ------------------------------------C-TTACCCCTCC-AGGTCATCATGATATCACGCCC----------C---------CAACCGTCCCTCGCGGC---------------AGGAGCCTTCCAGCCAATGGACACAGATTCCTGGCACAC----AGCACCTGATGCCAGT----------G---GCCGGGACAGTGGGACG-----TGATACTCGT-TTGGCCCAACAAAGCTTCCAAGCACTTTCGCTGACTCGCCATACGCAGGCCTACATGCTCAAGT Colletotrichum_karstii_CBS861.72 TTCATTGACACCAACTACGCTGTGAGTATCACCCCAC-TTACCCCTCCAAGGTCATCATGATATCACGCCC----------C---------CAACCGCCCCTCGCAGC---------------AGGAGCCTTCCAGCCAATGGACACAGATTCCTGGCACAC----AGCACCTGATGCCAGT----------G---GCCGGGACAGTGGGACG-----TGATACTCGT-TTGGCCCAACAAAGCTTCCAAGCACTTTTGCTGACTCGCCATACGCAGGCCTACATGCTCAAGT Colletotrichum_karstii_CBS106.91 TTCATTGACACCAACTACGCTGTGAGTATCACCCCAG-TTACCCCTCCAAGGTCATCATGATATCACGCCC----------C---------CAACCGCCCCTCGCAGC---------------AGGAGCCTTCCAGCCAATGGACACAGATTCCTGGCACAC----AGCACCTGATGCCAGT----------G---GCCGGGACAGTGGGACG-----TGATACTCGT-TTGGCCCAACAAAGCTTCCAAGCACTTTTGCTGACTCGCCATACGCAGGCCTACATGCTCAAGT Colletotrichum_karstii_CBS127552 TTCATTGACACCAACTACGCTGTGAGTATCACCCCAC-TTACCCCTCCAAGGTCATCATGATATCACGCCC----------C---------CAACCGTCCCTCGCGGC---------------AGGAGCCTTCCAGCCAATGGACACAGATTCCTGGCACAC----AGCACCTGATGCCAGT----------G---GCCGGGACAGTGGGACG-----TGATACTCGT-TTGGCCCAACAAAGCTTCCAAGCACTTTCGCTGACTCGCCATACGCAGGCCTACATGCTCAAGT Colletotrichum_karstii_CBS129833 TTCATTGACACCAACTACGCTGTGAGTATCACCCCAC-TTACCCCTCCAAGGTCATCATGATATCACGCCC----------C---------CAACCGTCCCTTGCGGC---------------AGGAGCCTTCCAGCCAATGGACACAGATTCCTGGCACAC----AGCACCTGATGCCAGT----------G---GCCGGGACAGTGGGACG-----TGATACTCGT-TTGGCCCAACAAAGCTTCCAAGCACTTTCGCTGACTCGCCATACGCAGGCCTACATGCTCAAGT Colletotrichum_karstii_CBS129829 TTCATTGACACCAACTACGCTGTGAGTATCACCCCAC-TTACCCCCCCAAGGTCATCATGATATCACGCCC----------C---------CAACCGTCCCTCGCGGC---------------AGGAGCCTTCCAGCCAATGGACACAGATTCCTGGCACAC----AGCACCTGATGCCAGT----------G---GCCGGGACAGTGGGACG-----TGATACTCGT-TTGGCCCAACAAAGCTTCCAAGCACTTTCGCTGACTCGCCATACGCAGGCCTACATGCTCAAGT Colletotrichum_karstii_CBS129815 TTCATTGACACCAACTACGCTGTGAGTATCACCCCAC-TTACCCCCCCAAGGTCATCATGATATCACGCCC----------C---------CAACCGTCCCTCGCGGC---------------AGGAGCCTTCCAGCCAATGGACACAGATTCCTGGCACAC----AGCACCTGATGCCAGT----------G---GCCGGGACAGTGGGACG-----TGATACTCGT-TTGGCCCAACAAAGCTTCCAAGCACTTTCGCTGACTCGCCATACGCAGGCCTACATGCTCAAGT Colletotrichum_boninense_CBS123755T TTCATTGACACCAACTACGCTGTGAGTATCACCCCAC-TTACCCCTCCAAGGTCGTCATGATATCAAGCCCGCCAACCCGGC---------CAACCGCCCTTCGCCGC---------------AGGAGCCTGGCAGCCAACGGACACGAGTTCCCAGACACC--------------GCCAGT----------G---GCCGAGATAGTGGGATG-----TGATACTCGT-TTGGCTCAACAAAGCTTCCAAGC-CACTCGCTGACTCGCCCTCCGCAGGCCTACATGCTCAAGT Colletotrichum_torulosum_CBS128544T TTCATTGACACCAACTACGCTGTGAGTATCACCCCAC-TTACCCCTCCAAGGTCGTCATGATATCAAGCCCGCCAACCCGGC---------CAACCGCCCTTCGCCGC---------------AGGAGCCTGGCAGCCAATGGACACAAGTTCCCAGACACC--------------GCCAGT----------G---GCCGGGATGGTGGGATG-----TGATACTCGT-TTGGCTCAACAAAGCTTCCAAGCACACTCGCTGACTCGCCCTCCTCAGGCCTACATGCTCAAGT Colletotrichum_cymbidiicola_IMI347923T TTCATTGACACCAACTACGCTGTGAGTATCTCCCCAC-TTACCCCTCCAAGGTCGTCATGATATCAAGCCCGCCAACCCGGC---------CAACCGCCCTTCGCCGC---------------AGGAGCCTGGCAGCCAATGGACACAAGTTCCCAGACACC--------------GCCAGT----------G---GCCGGGATAGTTGGATG-----TGATACTCGT-TTGGCTCAACAAAGCCTCCAAGCACACTCGCTGACTCGCCCTCCGCAGGCCTACATGCTCAAGT Colletotrichum_oncidii_CBS129828T TTCATTGACACCAACTACGCTGTGAGTATCACCCCAC-TTACCCCTCCAAGGCCGTCATGATATCAAGCCCGCCAACCCGGC---------CAACCGCCCTTCGCCGC---------------AGGAGCCTGGCAGCCAATGGACACAAGTTCCCAGACACC--------------GCCAGT----------G---GCCGGGATGGTGGGATG-----TGATACTTGT-TTGGCTCAACAAAGCTTCCAAGCACACTCGCTGACTCGCCCTCCGCAGGCCTACATGCTCAAGT Colletotrichum_beeveri_CBS128527T TTCATTGACACCAACTACGCTGTGAGTATCACCCCAC-TTACCCCTCCAAGGTCGTCATGATATCACGCCCGCCAAGCCGGC---------CAACCGCCCCTCGCCGC---------------AGGAGCCTGGCAGCCAATGGACACAAGTTCCCAGACACC--------------GCCAGT----------G---GCCGGGATGGTGGGATG-----TGATACTCGT-TTGGCTCAACAAAGCTTCCAAGCACACTCGCTGACTCGCCCTTCGCAGGCCTACATGCTCAAGT Colletotrichum_brassicicola_CBS101059T TTCATTGACACCAACTACGCCGTGAGTATCACCCCACTTTACCCCTCCAAGGTCGTCATGATATCACGCCCGCCAACTCGGC---------CAACCGCCCCTCGCCGC---------------AGGAGCCTGGCAGCCAATGGACACAAGTTCCCAG---AC----ACCACC----GCCAGT----------G---GCCGGGATGGTGGGATG-----TGATACTCGT-TTGGCTCAACAAAGCTTCCAAGCACACTCGCTGACTCGCCCTTCGCAGGCCTACATGCTCAAGT Colletotrichum_colombiense_CBS129818T TTCATTGACACCAACTACGCTGTGAGCACCACCCCAC-TTACCCCTCCAAGGTCGTCATGATATCACGCCCGCCAACCCGGC---------CAACCGCCCCTCGCCGC---------------AGGAGCCTGGTAGCCAATGGACACAAGTTCTCAG-----------------------------------G---CCCGGGATGGGGGGATG-----CGATACTCGT-TTGGCTCAACAAAGCTTCCAAGCACACTCGCTGACTCGCCCTTCGCAGGCCTACATGCTCAAGT Colletotrichum_phyllanthi_CBS175.67T TTCATTGACACCAACTATGCTGTGAGTATCACCCCAC-TTACCCCTCCAAGGTCATCATGATATCACGCCC----------C---------CAACCGTCCCTCGCGGC---------------AGGAGCCTTCCAGCCAATGGACACAGATTCCTCGCACAC----AGCACCTGATGCCAGT----------G---GCCGGGACAGTCGGACG-----TGATACTCGT-TTGGCCCAACAAAGCTTCCAAGCACATTCGCTGACTCGCCATACGCAGGCCTACATGCTCAAGT colletotrichum_annellatum_CBS129826T TTCATTGACACCAACTACGCTGTGAGTATCACCCCAC-CTACCCCTCCAAGGTCATCATGATATCACGCCC----------C---------CAACCGTCCCTCGCGGC---------------AGGAGC-TTCCAGCCAATGGACACAGATTCCTGGCACAC----GGCACCTCATGCCAGT----------G---GCCGGGACAGTGGGACG-----TGATACTCGT-TTGGCCCAACAAAGCTTGCAAGCACATTCGCTGACTCGCCATTCTCAGGCCTACATGCTCAAGT Colletotrichum_petchii_CBS378.94T TTCATTGACACCAACTACGCTGTGAGTATCACCCCAC-TTACCCCTCCAAGGTCATCATGATATCACGCCCGCCAACCCGGC---------CAACCGTCCCTCGCCGC---------------AGGAGCGTTGCAGCCAATGGACACAGATTCCTGGCCTAC----AGCATCTGATGCCAGT----------G---GCCGGGACAGTGGAACG-----TGATACTTGT-TTGGCTCAACAAAGCTTCCAAGCACATTCGCTGACTCACCCTACACAGGCCTACATGCTCAAGT 'Colletotrichum novae-zelandiae CBS_128505T' ----a?D-a--CAAGTACGCCGTGAGCATCACCCCAC-CTCACCCTCCA-TCTCGACATGACAGCAATTCCATTACCACGC--GC-AA-C-G----a?D-a--CGC-----------A----CCC-----CC--------------------------------AGGC--CA----------------a?D-a--C------AGCGCCGGTCACATGC----------G---GCCCCA-TA-TG----G------GAG--GT----TG--TTA-CA----a?D-a--AACCTT Colletotrichum_hippeastri_CBS125376T TTCATTGACACCAACTACGCTGTGAGTATCACCCCAC-TTACCCCACCGAGGTCATCATGATATCACCCCCGCCAATCTGGC---------CAACCGCCCCTCGCCGC---------------AGGAGCCTGGCGGCCAATGGACACAAGCTCCTACCACAC----AGCACTTGATGCCGGT----------G---GCCGGGATAGCGGGGCA-----TGAT----------GCTCAATAAAGCTCTCAAGCACACTCGCTGACTCGCCCTTCCCAGGCCTACATGCTCAAGT Colletotrichum_parsonsiae_CBS128525T TTCATTGACACCAACTACGCTGTGAGTATCACCCCAC-TTACCCCTCCGAGGTCATCATGATATCACCCCCGCCAACCCGGC---------CAACCGCCCCTCGCCGC---------------AGGAGCCTGGCGGCCAATGGACACAAGCTCCTACCACAC----AGCACCTGCTGCCGGT----------G---GCCGGGATAGCGGGGCA-----TGAT----------GCTCAATAAAGCTCTCAAGCACACTCGCTGACTCGCCCTTCCCAGGCCTACATGCTCAAGT Colletotrichum_brasiliense_CBS128501T TTCATTGACACCAACTATGCTGTGAGTATCACCCCAC-TTACCCCTCCGAGGTCATCATGATATCACTCCCGCCAACCCCGC---------CAACCGCCCCTCGCCGC---------------AGTAGCCTGGCCGCCAATGGACACAAGCTCCTACCACAC----AGCACCTGATGCCGGT----------G---GCCGGGATAGCGGGATA-----TGAT----------GCTCAATAAAGCTCTTAAGAACACTCGCTGACTCGCCCTTCGCAGGCCTACATGCTCAAGT Colletotrichum_dacrycarpi_CBS130241T TTCATTGAGACCAAGTACGCTGTGAGTTTAAGCCCAC-TTACCCCTCGAATTTCACCATGATATCACGCCCGTC-------C---------AACCCACCCCTCGCCGCCTTACTCGGCGGCTGAGGATCTTGGTAGCCAATCGATACAAGCTCCAACCAAGTATTGAGCAATTGGTGGCAAT----------GGGTGGTGGGATACCGGGACG-----TGATTTTCAT----GTCCAAAAAAGCTTCCAAGAACACTCGCTGACTCGCCCTTCCCAGGCCTACATGCTCAAGT Colletotrichum_constrictum_CBS128504T TTCATTGAGACCAAGTACGCTGTGAGTATAACCCCAC-TCACCCATCCAAATACACAATCACGTCACATCCGTTCGACCCGC---------CAATTGTTCCTCGATGCCTTCTTCGGCGGGCGAGGATATTGGTAGCCAATCGACACAAGCTCTTATCACAG----AGCGAGTTTTGGCATT----------G---GATGGAGTACCGGGACG-----TGACTTTTGT----GTCCACGTAGTTTTCCAGCAACACTCGCTGACTCTACCTTTCCAGGCCTACATGCTCAAGT Colletotrichum_feijoicola_CPC34245T -----------------------GAGTCTCACCCCCC-TTAACCCTCCAAGGTCATCATGATATCACGCCCGCCAACCCGGC---------CAACTGTCCCTCGTCAG---------------AGGATCCTGGCAGCCAACAGACACAAGCTCCTGGCACAC----AGCACCTGATGCCAGT----------G---GCCGGGACAGCGGGACG-----TGATACTTGT-TTGCCTCAACAAAGCTTTCAAGCACATTCGCTGACTCACCCTACGCAGGCCTACATGCTCAAGT ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 293; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 293; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 293; END; BEGIN TREES; Title Colletotrichum_GAPDH_CBSC; ID 0176f6c74e6861; LINK Taxa = Taxa; TRANSLATE [0] 1 Colletotrichum_gloeosporioides_CBS112999T, [1] 2 Colletotrichum_karstii_MG11, [2] 3 Colletotrichum_karstii_CML4024, [3] 4 Colletotrichum_karstii_CML4040, [4] 5 Colletotrichum_karstii_MG3, [5] 6 Colletotrichum_karstii_MG5, [6] 7 Colletotrichum_karstii_CORCG6T, [7] 8 Colletotrichum_karstii_CBS861.72, [8] 9 Colletotrichum_karstii_CBS106.91, [9] 10 Colletotrichum_karstii_CBS127552, [10] 11 Colletotrichum_karstii_CBS129833, [11] 12 Colletotrichum_karstii_CBS129829, [12] 13 Colletotrichum_karstii_CBS129815, [13] 14 Colletotrichum_boninense_CBS123755T, [14] 15 Colletotrichum_torulosum_CBS128544T, [15] 16 Colletotrichum_cymbidiicola_IMI347923T, [16] 17 Colletotrichum_oncidii_CBS129828T, [17] 18 Colletotrichum_beeveri_CBS128527T, [18] 19 Colletotrichum_brassicicola_CBS101059T, [19] 20 Colletotrichum_colombiense_CBS129818T, [20] 21 Colletotrichum_phyllanthi_CBS175.67T, [21] 22 colletotrichum_annellatum_CBS129826T, [22] 23 Colletotrichum_petchii_CBS378.94T, [23] 24 'Colletotrichum novae-zelandiae CBS_128505T', [24] 25 Colletotrichum_hippeastri_CBS125376T, [25] 26 Colletotrichum_parsonsiae_CBS128525T, [26] 27 Colletotrichum_brasiliense_CBS128501T, [27] 28 Colletotrichum_dacrycarpi_CBS130241T, [28] 29 Colletotrichum_constrictum_CBS128504T, [29] 30 Colletotrichum_feijoicola_CPC34245T; TREE PAUP_1 = (24:0.550762,(1:0.000000252825,((28:0.063216,29:0.261942):0.116784,((27:0.035572,(25:0.017773,26:0.00448):0.011341):0.046602,((19:0.009592,(20:0.033844,(18:0.004456,((14:0.013587,16:0.01369):0.004247,(15:0.004438,17:0.008845):0.0):0.013403):0.0000123011):0.006512):0.037205,(30:0.072312,(23:0.032145,(22:0.027614,(21:0.013406,((8:0.0,(3:0.0,9:0.004402):0.0):0.01328,((12:0.0,13:0.0):0.004395,(11:0.004387,(10:0.0,(6:0.0,(5:0.0,(4:0.0,(2:0.0,7:0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.004412):0.0):0.021216):0.016545):0.024605):0.001594):0.058257):0.403905):0.550762); END;