#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=30; TAXLABELS 'Pleurostoma richardsiae NR_135933_CBS_270.33' 'Pleurostoma richardsiae CSN144_ITS5' 'Pleurostoma richardsiae CSN514_ITS5_CS31' 'Pleurostoma richardsiae CSN947_ITS4_CS30' 'Pleurostoma richardsiae CSN496_ITS4_CS30' 'Pleurostoma richardsiae CSN1161_ITS5' 'Pleurostoma richardsiae CSN500_ITS5' 'Pleurostoma richardsiae CSN1925_ITS5_CS31' 'Pleurostoma richardsiae CSN501_ITS4_CS012' 'Pleurostoma richardsiae CSN1101_ITS4_CS022' 'Pleurostoma richardsiae CSN145_ITS4_CS30' 'Pleurostoma richardsiae CSN493_ITS5' 'Pleurostoma ochraceum NR_136033_CBS_131321' 'Pleurostoma repens NR_135925_CBS_294.39' 'Pleurostoma ootheca NR_136009_CBS_115329' 'Calosphaeria pulchella NR_145357_CBS_115999' 'Calosphaeria africana CSN33_ITS5' 'Calosphaeria africana NR_135945_STE_U_6182' 'Jattaea leucospermi NR_135948_CBS_119343' 'Jattaea mookgoponga NR_136008_CBS_120867' 'Jattaea mookgoponga EU367449_STE_U_6184' 'Jattaea ribicola NR_136135_CBS_139779' 'Jattaea tumidula NR_136137_CBS_140208' 'Jattaea aurea KT716462_CBS_140209' 'Jattaea algeriensis NR_135946_STE_U_6201' Jattaea_sp._CSN1152_ITS4_CS30 'Jattaea discreta NR_145369_CBS_127681' 'Jattaea taediosa NR_136136_MR_3669' 'Jattaea aphanospora NR_136007_J.F._06100' 'Togniniella acerosa NR_135947_CBS_113726' ; END; BEGIN CHARACTERS; TITLE 'Calosphaeriales - ITS alignment'; DIMENSIONS NCHAR=624; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Pleurostoma richardsiae NR_135933_CBS_270.33' -----------CCGAGTTGCAAACTCCCAAAACCC-ACCCGTA-CCTACCTACA-CGTTGCTTCGGCGG--TGCCGCCGCGGGGG----------------------GTGCCCAGCTGCTGGG-----CCCCCCCGGGG--------CGCCCGCCGGAGGCCACTA-AAACTCTTCTGTATCTCGC---GTACCATCTGAGCGAAT-----GGCGAATAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAGCCCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTCGGCCGTAAAA-CACCCCA--ACTCA-----------------------------CCAAAGG-TTGACCTCGGA-TCAGGTAGGAAT--------------- 'Pleurostoma richardsiae CSN144_ITS5' ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAG-CCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGWAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTCGGCCGTAAAA-CACCCCA--ACTCA-----------------------------CCAAAGG---------------------------------------- 'Pleurostoma richardsiae CSN514_ITS5_CS31' -----------------------------------------------ACCTACA-CGTTGCTTCGGCGG--TGCCGCCGCGGGGG----------------------GTGCCCAGCTGCTGGG----CCCCCCCCGGGG--------CGCCCGCCGGAGGCCACTA-AAACTCTTCTGTATCTCGC---GTACCATCTGAGCGAAT-----GGCGAATAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAG-CCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTCGGCCGTAAAA-CACCCCA--ACTCA-----------------------------CCAAAGG---------------------------------------- 'Pleurostoma richardsiae CSN947_ITS4_CS30' -------------GAGTTGCAAAACTCCCAAACCC-ACGCGTA-CCTACCTACA-CGTTGCTTCGGCGG--TGCCGCCGCGGGGG----------------------GTGCCCAGCTGCTGGGC---CCCCCCCCGGGG--------CGCCCGCCGGAGGCCACTA-AAACTCTTCTGTATCTCGC---GTACCATCTGAGCGAAT-----GGCGAATAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAG-CCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTCGGCCGTAAAA-CACCCCA--ACTCA-----------------------------CCAAAGG---------------------------------------- 'Pleurostoma richardsiae CSN496_ITS4_CS30' -------------GAGTTGCAAAACTCCCAAACCC-ACGCGTA-CCTACCTACA-CGTTGCTTCGGCGG--TGCCGCCGCGGGGG----------------------GTGCCCAGCTGCTGGG-----CCCCCCCGGGG--------CGCCCGCCGGAGGCCACTA-AAACTCTTCTGTATCTCGC---GTACCATCTGAGCGAAT-----GGCGAATAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAG-CCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTCGGCCGTAAAA-CACCCCA--ACTCA-----------------------------CCAAAGG---------------------------------------- 'Pleurostoma richardsiae CSN1161_ITS5' -------------GAGTTGCAAAACTCCCAAACCC-ACGCGTA-CCTACCTACA-CGTTGCTTCGGCGG--TGCCGCCGCGGGGG----------------------GTGCCCAGCTGCTGGG-----CCCCCCCGGGG--------CGCCCGCCGGAGGCCACTA-AAACTCTTCTGTATCTCGC---GTACCATCTGAGCGAAT-----GGCGAATAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAG-CCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTCGGCCGTAAAA-CACCCCA--ACTCA-----------------------------CCAAAGG---------------------------------------- 'Pleurostoma richardsiae CSN500_ITS5' -------------GAGTTGCAAAACTCCCAAACCC-ACGCGTA-CCTACCTACA-CGTTGCTTCGGCGG--TGCCGCCGCGGGGG----------------------GTGCCCAGCTGCTGGG-----CCCCCCCGGGG--------CGCCCGCCGGAGGCCACTA-AAACTCTTCTGTATCTCGC---GTACCATCTGAGCGAAT-----GGCGAATAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAG-CCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTC----------------------------------------------------------------------------------------------------------------------------------------------------- 'Pleurostoma richardsiae CSN1925_ITS5_CS31' ---------------------------------------------CTACCTACA-CGTTGCTTCGGCGG--TGCCGCCGCGGGGG----------------------GTGCCCAGCTGCTGGG-----CCCCCCCGGGG--------CGCCCGCCGGAGGCCACTA-AAACTCTTCTGTATCTCGC---GTACCATCTGAGCGAAT-----GGCGAATAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAG-CCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTCGGCCGTAAAA-CACCCCA--ACTCA-----------------------------CCAAAGG---------------------------------------- 'Pleurostoma richardsiae CSN501_ITS4_CS012' -----------------------------------------------------------------------------------------------------------------------------------------GG--------CGCCCGCCGGAGGCCACTA-AAACTCTTCTGTATCTCGC---GTACCATCTGAGCGAAT-----GGCGAATAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAG-CCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTCGGCCGTAAAA-CACCCCA--ACTCA-----------------------------CAAA------------------------------------------- 'Pleurostoma richardsiae CSN1101_ITS4_CS022' ---------------------------------------------------------------------------------GGGG----------------------GTGCCCAGCTGCTGGG-----CCCCCCC-GGG--------CGCCCGCCGGAGGCCACTA-AAACTCTTCTGTATCTCGC---GTACCATCTGAGCGAAT-----GGCGAATAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAG-CCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTCGGCCGTAAAA-CACCCCA--ACTCA-----------------------------CAAAGG----------------------------------------- 'Pleurostoma richardsiae CSN145_ITS4_CS30' -------------GAGTTGCAAAACTCCCAAACCC-ACGCGTA-CCTACCTACA-CGTTGCTTCGGCGG--TGCCGCCGCGGGGG----------------------GTGCCCAGCTGCTGGG----CCCCCCCCGGGG--------CGCCCGCCGGAGGCCACTA-AAACTCTTCTGTATCTCGC---GTACCATCTGAGCGAAT-----GGCGAATAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAG-CCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTCGGCCKTAAAA-CACCCCA--ACTCA-----------------------------CCAAA------------------------------------------ 'Pleurostoma richardsiae CSN493_ITS5' -------------GAGTTGCAAAACTCCCAAACCC-ACGCGTA-CCTACCTACA-CGTTGCTTCGGCGG--TGCCGCCGCGGGGG----------------------GTGCCCAGCTGCTGGG-----CCCCCCC-GGG--------CGCCCGCCGGAGGCCACTA-AAACTCTTCTGTATCTCGC---GTACCATCTGAGCGAAT-----GGCGAATAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAG-CCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCC---------------------------------------------------------------------------------------------------------------------------------------------------- 'Pleurostoma ochraceum NR_136033_CBS_131321' ----ATCATTACTGAGTTGCAAAACT-CCAAACCC-ACGCGTA-CTTACCACTGTCGTTGCTTCGGCGGA-CGCCGCCCCCGGTGTCCATC-------------TCCTTCCCCAGCGGGAGGA-----GGGCCCTGGGT--------CGCCCGCCGGAGGTTAACCAAACTCTTCTGTATCAACTG---TGAAACTCTGAGCATAAG---CTTCAATAAGTAAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCGGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTC--AGGCCC---TGCCTGGCGTTGGGGCACCGCGC-------AGCGCGCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGCCTAAAAACCTCGCTCAGGGCGTCCCGGCGCGCGTCTGCCGTAAAA-CACCCCC--TACCA-----------------------------CCTAAAGGTTGACC--------------------------------- 'Pleurostoma repens NR_135925_CBS_294.39' AGGGATCATTACTGAGTTGCAAAACTCCCAAACCC-ACGCGTACCTTACCTATGTCGTTGCTTCGGCGG--CGCCGCCCACTGGC----------------------CGCTCCGGCGCCCGGG-----------GGGTG--------TGCCCGCCGGAGGTTCTAC-AAACTCTCTGTATCACAGT---GGACTCTCTGAGAAAAAC---ATATCAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTC--AGGCCC---AGCCTGGCGTTGGGGCACCGCGC-------AGCGCGCGCGGGCCCTGAAATACAGTGGCGAG-CCGCCTGGACTCCGAGCGTAGTAGTGTAAAAGCCTCGCTCAGGGCGT-CCGGCGCGCGTC-GCCGTGAAA-ACCCCCA--ACT-------------------------------TCACAAGGTTGACCTCGGATTCAGGTAGGAATACCCGCTGAACTTAA 'Pleurostoma ootheca NR_136009_CBS_115329' -----------CTGAGTTGCAAAACTCCCAAACCC-ACGCGTA-TCTACCTATGTCGTTGCTTCGGCGG--CGCCGTCCCCAGGT-------------------------------GCTCCGG-----CGCCGCGGGGG--------CGCCCGCCGGAGGTTCT---AAACTCTCTGTATCACTGT---GGACTCTCTGAGAAAAC----ATACCAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTC--AGGCCC---AGCCTGGCGTTGGGGCACCGCGC-------AGCGCGCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGTGTAACAGCCTCGCTCAGGGCGTCCCGGCGCGCGTCGGCCGTAAAA-CCCCCCA--ACT-------------------------------ATCAAAGG--------------------------------------- 'Calosphaeria pulchella NR_145357_CBS_115999' AGGGATCATTAGCGAGTTGAAAAACTCCCAAACCC-ATGCGTACCTTACCA-TGTCGTTGCTTCGGCGGGCGGCTCTTGACCCTCCCCCCCGAGTCCGGTGGGGAGGGGAGAGGGCACGCGGGCCCCCCGTCGGGGGGG--------CGCCCGCCGGAGGCCCGAA-CAGACACTGTCATCTCAGCGAGAAGTCCTCTGAGCCAACTG---AAAAATCAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCCCCAAGGCCC-AGCGCCTGGTGTTGGGGCACCGCGG----------AGACGCGGGCCCCCAAGTCCAGTGGCGAGCCCGCCGGCGAACCGAGCGAAGTAACAT--ACCCTCCGCCACGGTGAC-CCGACGGGACCCAGCCGTGAAAACCGGTCG--GGAGCGCGGCCACGAAACCGCGCGACCGCCGAAACTAAGTGGTTGACCTCGGA-TCAGGTAGGAATACCCGCTGAACTTAA 'Calosphaeria africana CSN33_ITS5' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCCC--AAGGCCCAGCGCCTGGTGTTGGGGCACCGCGG----------AGACGCGGGCCCCCAAGTCCAGTGGCGAGCCCGCCGGCGAACCGAGCGAAGTAACAT--ACCCTCCGCCACGGTGAC-CCGACGGGACCCAGCCGTAAAA-TCGGGCG--GTCGCGCGGTCACAAACCGCGCCGACMGACGAAACTAAGTGG--------------------------------------- 'Calosphaeria africana NR_135945_STE_U_6182' AGGGATCATTAGCGAGTTGAAAAACTCCCAAACCC-ATGCGTACCTTACCA-TGTCGTTGCTTCGGCGGGCGGCCCTGACCCTTCCCCCCT---CCGGGGGGGAGCGGGAGAGGGCACGC-GGCCCCCCCTTTGGGGGG--------CGCCCGCCGGAGGCCCGAA-CAGACCCTGTCATCTCAGCGAGAAGTCCTCTGAGCCAACTGAAAAAAAATCAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCCC--AAGGCCCAGCGCCTGGTGTTGGGGCACCGCGG----------AGACGCGGGCCCCCAAGTCCAGTGGCGAGCCCGCCGGCGAACCGAGCGAAGTAACAT--ACCCTCCGCCACGGTGAC-CCGACGGGACCCAGCCGTAAAA-TCGGGCG--GTCGCGCGGTCACAAACCGCGCCGACCGACGAAACTAAGTGGTTGACCTCGGA-TCAGGTAGGAATACCCGCTGAACTTAA 'Jattaea leucospermi NR_135948_CBS_119343' AGGGATCATTATCGAGTTGCAAAACTCCCAAACCC-TTGCGTA-CATACCA-CGTCGTTGCTTCGGCGGGCTGCCGCCCTCCCCCCC----------------AGCGGGGGCGGGCGGACCTG-----GCCCGGGAGGG--------AGCCCGCCGGAGGCCCAAAACAAACTCTTGTATCCCATCCAGTCGTCTTCTGAGTGACTTG--AAAAATCAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCACCCCTC--AGGCCC---AGCCTGGCGTTGGGGCGCTGCGC-------GA-GAGCGCAGGCCCCCAAGTTCAGTGGCGAGCCGGCCGGGAACCCGAGCGTAGTAGC----ACTCTCCGCCACGGGAAC-CCGGACGGCCTCCGCCGTGAAA-CGGGACG--CGCGAGCGTCCCCCA-------------------CCAAAAGGTTGACCTCGGA-TCAGGTAGGAATACCCGCTGAACTTAA 'Jattaea mookgoponga NR_136008_CBS_120867' -----------ACGAGTTGCAAAACTCCCAAACCC-TTGCGTA-CATACCATTGTCGTTGCTTCGGCGGGCTGCCCTCCCCCTCG----------------------CGGGGGAGCGGACCTG-----GCCCGAGAGGGA-------AGCCCGCCGGAGGCCCAAAACAAACTCTTGTATCAAAACCAGTCGTCTTCTGAGTGACTTG--AAAAATCAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCACCCCTC--AGGCCC---AGCCTGGCGTTGGGGCGCTGCGC-------GA-GAGCGCAGGCCCCCAAGTGCAGTGGCGAGCCGGCCGGTAACCCGAGCGTAGTAAT----ACTCTCCGCCCCGGGACG-CCGGACGGCCTCCGCCGTTAAA-CGGGACGCCCACCAGCGTCCTCCA-------------------CTAAAGG---------------------------------------- 'Jattaea mookgoponga EU367449_STE_U_6184' AGGGATCATTAACGAGTTGCAAAACTCCCAAACCC-TTGCGTA-CATACCATTGTCGTTGCTTCGGCGGGCTGCCCTCCCCCTCG----------------------CGGGGGAGCGGACCTG-----GCCCGAGAGGGA-------AGCCCGCCGGAGGCCCAAAACAAACTCTTGTATCAAAACCAGTCGTCTTCTGAGTGACTTG--AAAAATCAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCACCCCTC--AGGCCC---AGCCTGGCGTTGGGGCGCTGCGC-------GA-GAGCGCAGGCCCCCAAGTGCAGTGGCGAGCCGGCCGGTAACCCGAGCGTAGTAAT----ACTCTCCGCCCCGGGACG-CCGGACGGCCTCCGCCGTTAAA-CGGGACGCCCACCAGCGTCCTCCA-------------------CTAAAGGT-TGACCTCGGA-TCAGGTAGGAATACCCGCTGAACTTAA 'Jattaea ribicola NR_136135_CBS_139779' ------CATTAATGAGTTGCAAAACTCCCAAACCA-CTGCGTA-CGTACCA-TGTCGTTGCTTCGGCGGGCCGCCGCCCTCCCCC--------------------CGGGGGGGCGCGGTCCTG-----GCCCGAGAGGG--------GGCCCGCCGGAGGTCTAAA------CTCTGTATCTCAGCGAGTTGTCTTCTGAGCATCTTG--AAAAATCAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCACCCCTC--AGGCCC---TGCCTGGCGTTGGGGCGCTGCGC-------GA-GAGCGCAGGCCCTCAAGTACAGTGGCGAGCCGGCCGGGAACCCGAGCGTAGTAAC----ACTCTTCGCCCTGGGGCC-CCGGGCGACCTCCGCCGTTAAA-CGAGACG--CGAGAGCGCCTTCCA-------------------CAAGG------------------------------------------ 'Jattaea tumidula NR_136137_CBS_140208' ------CATTAACGAGTTGCAAAACTCCCAAACCA-CTGCGTA-CTTACCA-TGTCGTTGCTTCGGCGGGCCGCCGCCTCCCCCCC-------------------CGGGGGGGCGCGGTCCTG-----GCCCGAGAGGG--------GGCCCGCCGGAGGTCTAAA------CTCTGTATCTCAGCGAGTTGTCTTCTGAGCATCTTG--AAAAATCAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCACCCCTC--AGGCCC---AGCCTGGCGTTGGGGCGCTGCGC-------GA-GAGCGCAGGCCCTCAAGTACAGTGGCGAGCCGGCCGGGAACCCGAGCGTAGTAAT----ACTCTTCGCCCTGGGACC-CCGGGCGACCTCCGCCGTTAAA-CGAGGCG--CGAGAGCGCCCTCCA-------------------CAAGG------------------------------------------ 'Jattaea aurea KT716462_CBS_140209' ------CATTACAGAGTTGCAAAACTCCCAAACCC-ATGCGTA-CATACCG-TGTCGTTGCTTCGGCGGGCTGTCGCCTCCCCCC----------------------GGGGGGTGCGGCCCCG-----GCCCGCGAGGG--------AGCCCGCCGGAGGTCTAAA------CTCTGTATCTCAGCGAGTTGTCTTCTGAGTATCTTG--AAAAATCAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCACCCCTC--AGGCCC---AGCCTGGCGTTGGGGCGCTGCGC-------GG-AAGCGCAGGCCCTCAAGTGCAGTGGCGAGCCGGCCGGAAACCCGAGCGTAGTAA-----AATCTCCGCCCCGGGAGC-CCGGACGGCCTCCGCCGTTAAG-CGAGACG--CGTAAAAAACGTCCT-------------------CCACAAGT--------------------------------------- 'Jattaea algeriensis NR_135946_STE_U_6201' AGGGATCATTACAGAGTTGCAAAACTCCCAAACCC-ATGCGTA-CATACCG-TGTCGTTGCTTCGGCGGGCTGTCGCCTCCCCC-----------------------GGGGGGTGCGGCCCCG-----GCCCGCGAGGG--------AGCCCGCCGGAGGTCTAAA------CTCTGTATCTCAGCGAGTTGTCTTCTGAGTATCTTG-AAAAAATCAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCACCCCTC--AGGCCC---AGCCTGGCGTTGGGGCGCTGCGC-------GG-AAGCGCAGGCCCTCAAGTGCAGTGGCGAGCCGGCCGGAAACCCGAGCGCAGTAGA----AATCTCCGCCCCGGGAGC-CCGGACGGCCTCCGCCGTTAAA-CGAGACG--CGTGAAAAACGTCCT-------------------CCACAAGTTTGACCTCGGA-TCAGGTAGGAATACCCGCTGAACTTAA Jattaea_sp._CSN1152_ITS4_CS30 -------------GAGTTGAAAAACTCCCAAACCCACTGCGTA-CGTACCA-TGTCGTTGCTTCGGCGGGCTGCCGCCCCCCCGA--------------------GAGGTGGGCGCGGCCCCG-----GCCCGAGAGGG--------AGCCCGCCGGAGGCCTAAA------CTCTGTATCTCGGCGAGATGTCTTCTGAGTATCTTG-AAAAAATCAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCACCCCTC--AGGCCC---AGCCTGGCGTTGGGGCGCTGCGC-------GA-GAGCGCAGGCCCTCAAGCCCAGTGGCGAGCCGGCCGGTAACCCGAGCGTAGTAGC----ACTCTTCGCCCTGGGAGC-CCGGACGGCCTCCGCCGTGAAA-CAGTGGGCGCGAGAGCGCCCCCCT-------------------CCACAAGG--------------------------------------- 'Jattaea discreta NR_145369_CBS_127681' -----------CAGAGTTGCAAAACTCCCAAACCCATTGCGTA-CATACCA-TGTCGTTGCTTCGGCGGGCTGCCGCCCTCCCTC----------------------CGGGGAGGCGGACCCG-----GCCCCTCGGGG--------AGCCCGCCGGAGGTACAAA------CTCTTATCTTTCTAGAAAAGTCTTCTGAGTATCTTG--AAAAATCAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCACCACTC--AGGCCC---AGCCTGGCGTTGGGGCACTGCGT-------GC-GAGCGCAGGCCCTCAAGTGCAGTGGCGAGCCGGCCGGGAACCCGAGCGTAGTAAT----ACTCTTCGCCCTGGGGGC-CCGGGCGGACTCCGCCATCAAC-CGAGGGA--CGCGAGTCCCTCCTT-------------------CTCAAGG---------------------------------------- 'Jattaea taediosa NR_136136_MR_3669' ------CATTACAGAGTTGCAAAACTCCCAAACCCATTGCGTA-CATACCA-TGTCGTTGCTTCGGCGGGCTGCCGTCCTCCCCC----------------------AGGGGAGGCGGACCCG-----GCCCCTCGGGG--------AGCCCGCCGGAGGTATAAA------CTCTTATCTTTATAGAAAAGCCTTCTGAGTATCTTG--AAAAATCAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCACCACTC--AGGCCC---AGCCTGGCGTTGGGGCACTGCGT-------GC-GAGCGCAGGCCCTCAAGTGCAGTGGCGAGCCGGCCGGGAACCCGAGCGTAGTAAT----ACTCTTCGCCCTGGGGCC-CCGGACGCACTCCGCCATGAAC-CGAGGGA--CGCGAGTCCCTCCTT-------------------CTCAAGG---------------------------------------- 'Jattaea aphanospora NR_136007_J.F._06100' -----------CAGAGTTGCAAAACTCCCAAACCCATTGCGTA-CATACCA-TGTCGTTGCTTCGGCGGGCTGCCGCCCTCCCTC----------------------CGGGGAGGCGGACCCG-----GCCCCTCGGGG--------AGCCCGCCGGAGGTACAAA------CTCTTATCTTCCTAG--AAGCCTTCTGAGTATCTTG--AAAAATCAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCACCACTC--AGGCCC---AGCCTGGCGTTGGGGCACTGCGT-------GC-GAGCGCAGGCCCTCAAGTGCAGTGGCGAGCCGGCCGGGAACCCGAGCGTAGTAAT----ACTCTTCGCCCTGGGGGC-CCGGGCGGACTCCGCCATCAAC-AGAGGGA--CTCGCGTCCCTCCTT-------------------CTCAAGG---------------------------------------- 'Togniniella acerosa NR_135947_CBS_113726' AGGGATCATTAGCGAGTCTAAAAAGCTCCAACCCC-CTGTGTATCTTACCC-TGTCGTTGCTTCGGCGGGCGGCCCCGACCCTGG----------------------GGCCGCGGCCTACCCC-----CCTCCCGGGGGGGTCCAGGCGCCCGCCGGAGGGACCACCGAAAACACTGAATCAGAAGC--GTACCCTCTGAGAGCTATA-CATAAGACAAGTAAAAACTTTTAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGTAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCCAGCGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCACTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTC--AGGCTC---GGCCTGGCGTTGGGGCCCTGCGC-----------CTAGCAGGCCCTTAAGTTCAGTGGCGAGCACGCCGGCACCCCGGGCGCAGTAAC----ACTCTCTGCCCGGGGGTTGCCGTCGGGCCTCCGCCGTAAAA-CGAGAGG--CTCTCCC---TCCGGGGGGAGGCCCTCTCAACAAACACATGGTTGACCTCGGA-TCAGGTAGGGATACCCGCTGAACTTAA ; END; BEGIN TREES; Title 'Calosphaeriales - ITS phylogeny'; LINK Taxa = Taxa; TRANSLATE [0] 1 'Pleurostoma richardsiae NR_135933_CBS_270.33', [1] 2 'Pleurostoma richardsiae CSN144_ITS5', [2] 3 'Pleurostoma richardsiae CSN514_ITS5_CS31', [3] 4 'Pleurostoma richardsiae CSN947_ITS4_CS30', [4] 5 'Pleurostoma richardsiae CSN496_ITS4_CS30', [5] 6 'Pleurostoma richardsiae CSN1161_ITS5', [6] 7 'Pleurostoma richardsiae CSN500_ITS5', [7] 8 'Pleurostoma richardsiae CSN1925_ITS5_CS31', [8] 9 'Pleurostoma richardsiae CSN501_ITS4_CS012', [9] 10 'Pleurostoma richardsiae CSN1101_ITS4_CS022', [10] 11 'Pleurostoma richardsiae CSN145_ITS4_CS30', [11] 12 'Pleurostoma richardsiae CSN493_ITS5', [12] 13 'Pleurostoma ochraceum NR_136033_CBS_131321', [13] 14 'Pleurostoma repens NR_135925_CBS_294.39', [14] 15 'Pleurostoma ootheca NR_136009_CBS_115329', [15] 16 'Calosphaeria pulchella NR_145357_CBS_115999', [16] 17 'Calosphaeria africana CSN33_ITS5', [17] 18 'Calosphaeria africana NR_135945_STE_U_6182', [18] 19 'Jattaea leucospermi NR_135948_CBS_119343', [19] 20 'Jattaea mookgoponga NR_136008_CBS_120867', [20] 21 'Jattaea mookgoponga EU367449_STE_U_6184', [21] 22 'Jattaea ribicola NR_136135_CBS_139779', [22] 23 'Jattaea tumidula NR_136137_CBS_140208', [23] 24 'Jattaea aurea KT716462_CBS_140209', [24] 25 'Jattaea algeriensis NR_135946_STE_U_6201', [25] 26 Jattaea_sp._CSN1152_ITS4_CS30, [26] 27 'Jattaea discreta NR_145369_CBS_127681', [27] 28 'Jattaea taediosa NR_136136_MR_3669', [28] 29 'Jattaea aphanospora NR_136007_J.F._06100', [29] 30 'Togniniella acerosa NR_135947_CBS_113726'; TREE Imported_tree_1 = (((14:0.01585713,(15:0.02251214,(13:0.12690799,((12:0.0,7:0.0)33:0.0,((2:0.0,(1:0.01072725,(9:0.0,10:0.0)62:0.0050118)12:0.00016183)12:0.0,(4:0.0,(11:0.0,((6:0.0,5:0.0)24:0.0,(3:0.0,8:0.0)6:0.0)0:0.0)1:0.0)0:0.0)7:0.0)100:0.14529364)76:0.04553593)57:0.02075785)100:0.28829118,((19:0.01257953,((((25:0.00398845,24:0.00437425)94:0.04849272,(26:0.0479987,(28:0.00933981,(29:0.00963899,27:0.0005859)70:0.01097593)99:0.11794342)35:0.00754617)30:0.0092512,(23:0.00365518,22:0.01780105)97:0.0328851)52:0.04703368,(21:0.0,20:0.0)96:0.0373445)36:0.01624844)64:0.10005773,(16:0.02657523,(18:0.0,17:0.0):0.03630098)100:0.18122179)100:0.08828558)57:0.191680945,30:0.191680945[%selected = on ])[% ] [% ] [% setBetweenBits = selected ]; END;