#NEXUS
[written Sun Aug 30 19:27:36 JST 2020 by Mesquite  version 3.61 (build 927) at MyComputer/192.168.56.1]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=4;
	TAXLABELS
		Volvox_reticuliferus_female Volvox_reticuliferus_male Volvox_africanus Chlamydomonas_reinhardtii 
	;

END;


BEGIN CHARACTERS;
	TITLE  VRM043;
	DIMENSIONS  NCHAR=441;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	Volvox_reticuliferus_female  MRTIIF--------WYAALVLSAYFDIVVGLQIVFKEPQLSFSSPELEQPKYTIMLN-SQGSKMQLASNALGVLP---LPVQC--------PRVHLATADGWSYLCTIPMKDCIMGMKRQVHGVLH-MDTPPSTL--------------------------------------ELPFTLLEELSALCFYRQEGLWTYEVCYRKHVRQFRQDSSGKSEDFSCGTYDVRRHQDESIKEDVNSYRHPIRYVSHIFVGGARCELTGQQRSAEVRFTCLPDINDNVVIAIKEFPACNYVFLVNAPALCKHKEFQLPPQHDFSILCEPR*---------------------------------------------------------------------------------------------------------------------
	Volvox_reticuliferus_male    MYSLVI----------LLLVLCGRLDFSLSLAIT--DVHSSFSRLNLVLPEYVVALA-SKERTVHTMAHPTDTEPEIASPITRTTRTTAVFPQVTLSAEDGRKYCCMVFTADETVSRPPRGHVARQLMDNDEQVE--------------------------------------KTPFELLEAMSALCLYRQEGLWTYELCYKKYVRQFRQDKSGHIEDFSCGVFTGGSHQDESAKEDLSSHPYPIWYVSHVYAGGAGCAMTGEPRTAEVRFTCMPGINDNAIVSINEFPTCNYVFVINAPVLCTLKNFSPPVQQEIMLSCEPALNGC*-----------------------------------------------------------------------------------------------------------------
	Volvox_africanus             MRVIIF--------WYSAFVLSASCDIVLGIQVAFQEPQISFSGPELGQPKYTILLN-SKESKAQL-ASALEVLP---LPIQC--------PRVHLATADGWSYMCTIPTKDCIAGMKWQMHGAHN-VNPSPSTM--------------------------------------AVPFTLLEALSALCFYRQEGLWTYEICYRKHVRQFRQDSSGQSEDFSCGTYDVGRHQDESIKEDANSFRQPIRYVSHIFTGGARCELSGQQRSAEVRFTCLPDIHDNVVIAMKEFPTCNYVFLVNAPALCKHKEFQMPPHHDFSILCKPS----------------------------------------------------------------------------------------------------------------------
	Chlamydomonas_reinhardtii    MFRLRLATCLVWLGWIWSLAPPPFVDAASITVIT--DSVSSFALPDPSEPKYIVTLAGPKGSNLAGVVSSGAEASADTGSSEAPAEPAAAARRITMTAANGRRYTCSLPPDSATGGAAATALAAAQAVAAAESSVASGSSAGSTEAQAAAVDASTAGSTAASVAADTGAAYGQKTPHELLEAMSALCLYRQEGLWTYEMCYKKHVRQFRQDASGRNEDFSCGKYTGDEEQNSSILLDASSTAVPIRYVSHVFSGGAKCTMTGAERTAEVRFTCLPDTTDNVLVSIKEFPTCNYVFVVTTPFLCKHPLFKPAADKNVAIKCEPIPSAADGEEDAAQAQESDTAAGGRSATDEAGGLGTAPPPAAAPAAASSSDTSSTCEAGDGTCSAGGDGEKVEAANKGADAVIADEADGSGAEDEDDDSEDTGTDVDAAEDFTGPPVAL*

;


END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1- 441;

END;

BEGIN NOTES;

	TAXABITS   NAME = newlyAddedTaxon on =  1 -  4;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1- 441;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Mk1 (est.)':  1- 441;
END;

BEGIN TREES;
	Title VRM043;
	ID 01743406649e10;
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		1 Volvox_reticuliferus_female,
[1] 		2 Volvox_reticuliferus_male,
[2] 		3 Volvox_africanus,
[3] 		4 Chlamydomonas_reinhardtii;
	TREE Imported_tree_1 = ((1:0.09774712,3:0.13600009)1.0000:0.50150992,2:0.48269603,4:0.65761922);

END;


Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1598783256930;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 2680845398604380955;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 3001489815987239298;
			mqVersion 361;
			checksumv 0 3 2123548936 null  getNumChars 441 numChars 441 getNumTaxa 4 numTaxa 4   short false   bits 2097151   states 2097151   sumSquaresStatesOnly 1.7121017097779E13 sumSquares 1.7121017097779E13 longCompressibleToShort false usingShortMatrix false   NumFiles 1 NumMatrices 1;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState false false 218;
			setPopoutState 300;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 700 472;
			setLocation 8 8;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			desuppress;
		endTell;
		getEmployee  #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord;
		tell It;
			showDataWindow #3001489815987239298 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker;
			tell It;
				getWindow;
				tell It;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 482 400;
					setLocation 8 8;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
					endTell;
					setActive;
					setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow;
					colorCells  #mesquite.charMatrices.ColorByState.ColorByState;
				tell It;
					setStateLimit 9;
					toggleUniformMaximum on;
				endTell;
					colorRowNames  #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor;
					colorColumnNames  #mesquite.charMatrices.CharGroupColor.CharGroupColor;
					colorText  #mesquite.charMatrices.NoColor.NoColor;
					setBackground White;
					toggleShowNames on;
					toggleShowTaxonNames on;
					toggleTight off;
					toggleThinRows off;
					toggleShowChanges off;
					toggleSeparateLines off;
					toggleShowStates on;
					toggleReduceCellBorders off;
					toggleAutoWCharNames off;
					toggleAutoTaxonNames off;
					toggleShowDefaultCharNames off;
					toggleConstrainCW on;
					toggleBirdsEye off;
					toggleShowPaleGrid off;
					toggleShowPaleCellColors off;
					toggleShowPaleExcluded off;
					togglePaleInapplicable on;
					togglePaleMissing off;
					toggleShowBoldCellText off;
					toggleAllowAutosize off;
					toggleColorsPanel off;
					toggleLinkedScrolling on;
					toggleScrollLinkedTables off;
				endTell;
				showWindow;
				getWindow;
				tell It;
					forceAutosize;
				endTell;
				getEmployee #mesquite.charMatrices.AlterData.AlterData;
				tell It;
					toggleBySubmenus off;
				endTell;
				getEmployee #mesquite.charMatrices.ColorCells.ColorCells;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel;
				tell It;
					togglePanel off;
				endTell;
				getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector;
				tell It;
					autotabOff;
				endTell;
				getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.align.AlignToDropped.AlignToDropped;
				tell It;
					gapCosts 16 6 1 1;
					subCosts  5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5;
				endTell;
				getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		endTell;
end;