#NEXUS
[written Mon Aug 31 02:12:14 JST 2020 by Mesquite  version 3.61 (build 927) at MyComputer/192.168.56.1]

BEGIN TAXA;
	DIMENSIONS NTAX=5;
	TAXLABELS
		Volvox_reticuliferus_male Volvox_reticuliferus_female Chlamydomonas_reinhardtii Volvox_africanus_long_MT_like Volvox_africanus_short_MT_like 
	;

END;


BEGIN CHARACTERS;
	DIMENSIONS  NCHAR=326;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	Volvox_reticuliferus_male       --------MISFRLSALLILSVAASRCLAQYEYD--YGYGYDFYDAEDDFYYDEYGYYGDEDEAYYEYYGYYADDFAGYEDYYAEEYDFFEECFFDTNGQPVLANGTASCDIKFTGVDKQADKLNGGLDGVYKLTSCYNGKPMYKRQSSPAGEDRVLWYSSTFGDWDISKGGEPNEAEILMYGGEMEHASVPLFVGSWHLGGDLKSDTALGEEDYLPINVAVSCADGSVFKA-DMNSYKQVIGPVLTDEEIEAKYRYIYDKYSKADPSPTINFTFVVLLVMSGLTIVLAIPYFLLRKKGVKGGSISVSFAQMLNQSKKKSTGHIN-
	Volvox_reticuliferus_female     ---------MSFRLSAVFILAVATARCLAQMEYD--YGYGYDFYETDDDFYYDEYGYYGDEDEAYYEYYGYYADDFAGYEDYYAEEYDFFEECFFDTNGQPVLANGTASCDIKFAGVDKQADKLNGGLDGIYMLTSCYNGKPMYKRQSSPAGEDRVLWYSSTFGDWDISKGAEPNEAEILMYGGEMEHASVPLFVGSWHLGGDLKSDTALGEDDYLPINVAVSCADGSIVKA-DLSSYKQVIGPVLTDEEIEAKYRYIYDKYSKADPSPTINFTFVVLLVMSGLTIVLAIPYFLLRKKGVKSGSISVSFAQMLNQSKKKSTGHIN-
	Chlamydomonas_reinhardtii       --------MRAARVLPLLLLAVAASRCFAQYEYDYGYGYGYDFYDTEDDFYYDEYGYYGDEDEAYYEYYGYYADDFAGYEDYYMEEYDFFEECFFDTNGKPVLANGTASCDIKIKGVDKQADRLQGGLDGVYQLTSCYNGKPMYKRKNSPAGDDRVLWYSSTFGDWDVSKGAEPNEAEILMYGGEMEHASVPLFVGSWHLGGDLRSDTSLGEDDYLPISVAVSCADGTVYKEDDVTSYKQFSGPVLTDEEIEAKYQYIYEKYSRADPSPTINFTFVVLLVMTGLTIVLAIPYFLLRKKGAKGGSISMSFAQMLSQSKKKSTGHIN-
	Volvox_africanus_long_MT_like   ---------MRFPLPSLLILAVAAARCLAQMEYD--YGYGYELYDTDDDFYYDEYGYYGDEDEAYYEYYGYYADDFAGYEDYYAEEYDFFEECFLDTNGLPVLANGTASCDIKIAGVDKQADKLNGGLDGIYKLNSCYNGKPMYKRQSSPAGEDRVLWYSSTFGDWDISQGSEPNEAEIYLYGGEMEHASVPLFVGSWHLGGDLKSDTALREDDYLPINVAVSCADGSVVKA-DSSSYKQVIGPVLTDEEIEAKYRYIYDKYSKADPSPTINFTFVVLLVMSGLTIVLAIPYFLLRRKGVKGGSIPVSFAQMLYQSKKKSTGHIN-
	Volvox_africanus_short_MT_like  MFIVIDAALISFRISTFLILSVAASRCLAQYEYE--YGYGYDFNDAEDDFYYDEYGYYGDEDEAYYEYYGYYADDFAGYEDYYAEEYDFFEEFAGKWNRLLRHQNCRG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

;


END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1- 326;

END;

BEGIN NOTES;

	TAXABITS   NAME = newlyAddedTaxon on =  1 -  5;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1- 326;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Mk1 (est.)':  1- 326;
END;

BEGIN TREES;
	Title VRM051;
	ID 0174405a753930;
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		1 Volvox_reticuliferus_male,
[1] 		2 Volvox_reticuliferus_female,
[2] 		3 Chlamydomonas_reinhardtii,
[3] 		4 Volvox_africanus_long_MT_like,
[4] 		5 Volvox_africanus_short_MT_like;
	TREE Imported_tree_1 = ((2:0.04656924,4:0.09787369)0.8050:0.04175742,1:0.0,5:0.27024806)0.8300:0.02963923;

END;