#NEXUS

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=8;
	TAXLABELS
		Volvox_reticuliferus_Female Volvox_reticuliferus_Male Volvox_carteri_Male Volvox_carteri_Female Yamagishiella_unicocca_Minus Yamagishiella_unicocca_Plus Chlamydomonas_reinhardtii Volvox_africanus 
	;
END;


BEGIN CHARACTERS;
	TITLE  Vr_Va_MTMTM_1058p_8x483;
	DIMENSIONS  NCHAR=483;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	Volvox_reticuliferus_Female   -MEDKAPSTPKPDGGLEEGKQQVSPRNGPS-QGQLGCSFFSRLTLELWRRIRLEVVVEWPLLKQRWKVLLFGIVMQYVHGIFTQLAHRMHKPQDQPLHDVGFDLTPELGPDKHWVSETIFGLAFAVFVLWTFSPFVSQRKLFYTVVMWTRLLMVLVVCQALRIMTFSVTQLPGPSFHCRANDPSARRSWPVHWTGHLVVDVGRQVSKSCGDLIFSSHTTFMLTGILAYNEYGSLFFMKAVSWLLGIILSILIVASRKHYTVDVVIAWYTVPLVFYTMYRRWTTRRPMSDFIGGPAMPAFENMDDAELELGEVLIDRGTCTSGTFFGCIDSG----AFGKAAPRPSTLKISVRAP---------VSLK-NHEILLGSGEAYGDFLAASAGPLRSHVEGNAIIKCCDAQGRTAAQGNSGVPAAVVRGMARTAGEVTDAWPLQQQLQRQQHVGQQLEDGLQ-ERERRTQGHGPLTSTSWQFPSDS-
	Volvox_reticuliferus_Male     -MEDKAPSTPRTDGALEEGKQQGSPRGGLG-HAQQGCLFFSRLVLEVWRRVRLEVVVEWPLLKQRWKVLLFGIVMQYVHGIFTQLAHRMHQPKEQPLHDVGFDLTPELGPDKHWVSETIFGLAFATFVLWTFSPFVSQRKRFYTVVMWTRLLMVLVVCQALRIVTFSVTQLPGPSFHCRANEPTARRPWPSHWTGHLVVDVGRQVSKSCGDLIFSSHTTFMLTGILAYNEYGSVLVIKATSWLLGVILSILIIASRKHYTVDVVIAWYTVPLVFYTMYRRWTTRRPMSDFIGGPVLSAFDDVDGTELELEEVFIDRGTCGSGALFGCIDGGAV--ATSKTAPRPNTLKISLHAP---------VGVS-NHHVLMGPGGVYGSF-------LGNEVESVTGSKFCDVQGRT--QSSSGIPAAVMRGMARPAGESTDTRASQQQ-PRQQQAGQQLEDGL------RTHGIGLHILTSWQMPSS--
	Volvox_carteri_Male           MVDDNEPSNLRSDGVLEEGKQITSPRTGSA-HFQLGCSSSSRLIWEIWRRIRLEVVVEWPLLKQRWKVLLFGIVMQYVHGVFTQLAHRMHQPQELPLHDVGFDLTPELGPEEHWVSEAIFGVAFATFVLWTFSPFVSQRKRFYTVVMWTRLLMVLVVCQALRIVTFSVTQLPGPSFHCRANEQTSRRPWPAHWTGHLVVDVSRQVSKSCGDLIFSSHTTFILTGILAYNEYGSLLVVKSASWTLGVVLSILIIASRKHYTVDVVIAWYTVPLVFFSMYRRWTTRRPMSDFIGSTTSPAFDDVDGSEMELEEVLIERGTCGGGELFGCMDGGG---LGGKIMARPSTIKVSVRSLLDGRCMGM-SSLS-SHHALLGSGDACGGFSGSAETKGGSSNALNNGHTWIGTQGKY------VVPVSLVRGTARSAMEGLEAWQLQQK----QQPGQQ-----P-ESDRGIQGALVPMDPAWLFEPNS-
	Volvox_carteri_Female         -MEDKAPSTPRTEGSLDEGRQFSPPRIGPA-RVQQCCSSLFWLILELWRRIRLEVVVEWPLLKQRWKVLLFGIVMQYVHGIFTQLAHRMHQPQVEPLHDVGFDLTPELGPDNHWVSETIFGLGFAMFVLWTFSPFLRKDKRFYTVVLWTRLLMVLVVCQALRIVTFSVTQLPGPSFHCRANAPSARRPWPAHWSGHLVVDVGRQVSKSCGDLIFSSHTTFILTGILAYNEYGFLRAMKAMSWLLGVVLSILIVASRKHYTVDVIIAWYTVPLVFYMMYRRWTTRRPMSDFIGDAPVPAFDDVDGGEMELEEVLIERSSCGSGPLFGCMDGSGH--GITKMMPRIGTLKISVRAPLADRHLGAVVGLG-QSSPILGTGGTFIGT-------SGNHLIEGVISKPCETQVRT----SSGTLTSVVRGLGRPAVQGLDVLPLQQHQLQRQQPGQQVEEELP---DRWTQGTPTTTSSLWFLAPNT-
	Yamagishiella_unicocca_Minus  -MEDKGPGTPKPDGSLEEGKQAGSPRMGFV-QAQQGCSVCSRVFWELWRRIRLEVVVEWPLLKQRWKILLFGLVMQYVHGIFTQLAHRMHQPQEQPLHDVGFDLTPELGPEKHWVSETIFGIAFASFVLWTFTPFVSQRKRFYTAVMWSRLLMVLVVCQALRIVTFSVTQLPGPSFHCRAHEASARRPWPAHWSGHLMVDVGRQVSKSCGDLIFSSHTTFMLTGILAYNEYGSLALMKAMSWLLGVILSVLIVASRKHYTVDVVIAWYTVPLVFYTMYRRWTTRRPMSDFIGGSAMSAFDDVDGGELELEEVLIDRSS----GMMGSMDTGGK--AMGGAQPRPSTLKISVRAPQDGRHPSSFGGLGLGGHVLLGYAQSSLGL-----GTFSKDTDGGIGAKGDTSRGGQ----GSVGQATVVRN-ARTNAEVEWQSQQQHSSEPTDEGGLHATAATPQDLERWSPGGPPSISSPWFFAPNR-
	Yamagishiella_unicocca_Plus   -MDDKGPGTPKPDSSLEDGKQTGSPRMGFV-QAQQGCSACSRVFWELWRRIRLEVVVEWPLLKQRWKILLFGLVMQYVHGIFTQLAHRMHQPQEQPLHDVGFDLTPELGPEKHWVSETIFGVAFASFVLWTFTPFVSQRKRFYTAVMWSRLLMVLVVCQALRIVTFSVTQLPGPSFHCRAHEASARRPWPAHWSGHLMVDVGRQVSKSCGDLIFSSHTTFMLTGILAYNEYGSLALMKAMSWLLGVILSVLIVASRKHYTVDVVIAWYTVPLVFYTMYRRWTTRRPMSDFIGGSAMSAFDDVDGGELELEEVLIDRSS----GIMGSMDTGGK--AMGGAQPRPSTLKISVRAPQDGRHPSSFGGLGLGGHVLLGYAQSSLGL-----GTFSKDTDGGIGAKGDTSRGGQ----GSVGQATVVRN-ARTNAEVEWQSQQQHSSEPTDEGGLHATAATPQDLERWSPGGPPSISSPWFFAPNR-
	Chlamydomonas_reinhardtii     -MEEKAPSTPKADATSVEDGRAASPRYGFASQAKESCSALSRLTLELWRRIRLEVVVEWPLLKQRWRILLFGLIMQYVHGIFTQLAHRMHQPQEEPLHDVGFDLTPELGPEQHWVSETIFGIAFATFVLWTFTPFVTQRKRFYTAVMWSRLLMVLVVCQALRIVTFSVTQLPGPSFHCRASEPTARREWPSHWTGHVFIDVGRQMSKSCGDLIFSSHTTFMLTGILAYNEYGSLAFMKALSWLMGVIISILIVASRKHYTVDVVIAWYTVPLVFYTMYRRWTTRRPMSDFIGGSALSAFDDVDGGELELEEVLIDRGA-------GGMEAGGKTAAMGGAQPRPNTLKISVRSSQDGRH-------------LLGMGLTL----------HAKDVDTSSSGKGEAGMARS----GAGQTGPGARGAGARSSDAAESTTSASTAAQMDDGSQQ---------ERRAQGGQASSTGSWFFSQRS-
	Volvox_africanus              -MEDKAPSTPKPDGGFDEGRQQGSPRSGPA-QCHQGCSFFSRLTLEVWRRIRLEVVVEWPLLKQRWKVLLFGIVMQYVHGIFTQLAHRMHKPQDKPLHDVGFDLTPELGPDKHWVSETLFGLAFAIFVLWTFSPFVSQRKLFYTVVMWTRLLMVLVVCQALRIMTFSVTQLPGPSFHCRANEPSARRSWPVHWTGHLVVDVGRQVSKSCGDLIFSSHTTFMLTGILAYNEYGSLLFMKAVSWLLGAILSVLIVASRKHYTVDVVIAWYTVPLVFYTMYRRWTTRRPMSEFIGGPAMPAFEDMDGGELELGEVLIDRDTCGSGALLACIDTG----AFGKAAPRQNTLKISVRAP---------VTLG-NHQVLLGSGVAYGGFLAASAGSSRSQAEVNASHKSCEIQGRTGSQANSGVPVAVVRGMARLAGEVTEPWPLPQQLQRQQHISQQLEDSLQ-ERERRVQGHGPLISTSWQFSSDS-
;
END;


BEGIN TREES;
	Title Vr_Va_MTMTM_1058p_8x483;
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		1 Volvox_reticuliferus_Female,
[1] 		2 Volvox_reticuliferus_Male,
[2] 		3 Volvox_carteri_Male,
[3] 		4 Volvox_carteri_Female,
[4] 		5 Yamagishiella_unicocca_Minus,
[5] 		6 Yamagishiella_unicocca_Plus,
[6] 		7 Chlamydomonas_reinhardtii,
[7] 		8 Volvox_africanus;
	TREE PAUP_1 = ((7:0.212056,(5:0.002165,6:0.013116):0.145673):0.0757515,((3:0.247602,4:0.223107):0.05094,(2:0.130317,(1:0.063955,8:0.081612):0.080044):0.053029):0.0757515)[% ] [% ] [%  setBetweenBits = selected ];

END;