#NEXUS

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=12;
	TAXLABELS
		Volvox_reticuliferus_Female 'Volvox africanus Long_MT_like' Volvox_carteri_Female Eudorina_sp._female 'Volvox africanus Short_MT_like' Volvox_reticuliferus_Male Chlamydomonas_reinhardtii_Minus Chlamydomonas_reinhardtii_Plus Gonium_pectorale_Minus Gonium_pectorale_Plus Volvox_carteri_Male Eudorina_sp._male 
	;
END;

BEGIN CHARACTERS;
	TITLE  SPS1_12x120;
	DIMENSIONS  NCHAR=120;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	Volvox_reticuliferus_Female      GFLSCREVFTTIHATLSSVFPIVIPYAQHIPSFCDAWGYNMAFTDPNQVPLGADNLDARIADRIARLPLGFLDGVTFAGLCHLNKVVRIALAEENEVYTATTTRFIHGAGIKAHCKDV--
	'Volvox africanus Long_MT_like'  GFLSCREVFTTIHATLSSVFPTVIPYAQHIPSFCDAWGFNMAFTDPNQVPLGADNLDARIADRIARLPLDFLDGVTFAGLCHLNKVVRIALAEEKEVYTATATRFIHGTGINAHCKDA--
	Volvox_carteri_Female            GFLSCREVFSTIHATLRAVFPTVIPYTQHIPSFCDAWGFNMAFTDPEQVPLGIEVFDSQVESRIACLPLSFLDGATFTGLRQLNKIVRIALAQETEVYTARTARFIHGAGVKTVTERHEN
	Eudorina_sp._female              GFLSCREVFTTIHATLRSVFPTVIAYAQHVPSFCDTWGYNMAFSNPDQVQLSTEVFDVRIEERILHLPLTFLDGQTFAGLCQLNKVVRSALSEETGLYTVGTARFIHGAGVNA-------
	'Volvox africanus Short_MT_like' GCLSCHEVFTSINATLRSVFPSVVPYVQHIPSFCDAWGYTMVFTDPTQVPLSAELMDARIEDRIDHLPLRFLDGETFTGLHQLNKVVRMALMNETEIYTVATARFIHGEGVKCREAA---
	Volvox_reticuliferus_Male        GFLSCREVFTSINATLRSVFPSVVPYVQHIPSFCDAWGYTMAFTDPMQVPLSAELMDARIEDRIDHLPLSFLDGETFTGLRQLNKVVRMALMNETEIYTVATARFIHGAGVKRQEAV---
	Chlamydomonas_reinhardtii_Minus  GFLSCKEVFTAIHSTVRSVFPVVVPYAQHIPSFCDIWGYNMAFSDAAQAPLSPEELDSRIGARLDGVPLHFLDGVTFQGLRHLNKMVRVALQEEKEVYTVDSARFIHGAGVKA-------
	Chlamydomonas_reinhardtii_Plus   GFLSCKEVFTAIHSTVRSVFPVVVPYAQHIPSFCDIWGYNMAFSDAAQAPLSPEELDSRIGARLDGVPLHFLDGVTFQGLRHLNKMVRVALQEEKEVYTVDSARFIHGAGVKA-------
	Gonium_pectorale_Minus           GFLSCKEVFSSIHATLRSVFPAVTAYTQHIPSFCDVWGYNMAFRDADQTLLTEEQLDSRIAQQLGGRPLTFLDGATFTGLRQLNKVVREALESEKEVYTADSARFIHGSGLKA-------
	Gonium_pectorale_Plus            GFLSCKEVFSSIHATLRSVFPAVTAYTQHIPSFCDVWGYNMAFRDADQTLLTEEQLDSRIAQQLGGRPLTFLDGATFTGLRQLNKVVREALESEKEVYTADSARFIHGSGLKA-------
	Volvox_carteri_Male              GFLSCREVFSAINATLRSVFPSVVAYVQHIPSFCDAWGYNMAFTDPEQVPLCAGPLDARIEDRIVCPPLSFLDGETFSGLRQLNKIVRMALTAETGVYTVSTARFIHGAGVKASGLDS--
	Eudorina_sp._male                GILSCREVFTAINATLRSVFPSVVPYAQHIPSFCDAWGYNMSFTDPKQVPLSAELFDAQIEDRISSLPLSFLDGATFTGLRQLNKTVRTALAEETEVYTISTARFIHGGGVKMSA-----
;
END;

BEGIN TREES;
	Title SPS1_12x120;
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		1 Volvox_reticuliferus_Female,
[1] 		2 'Volvox africanus Long_MT_like',
[2] 		3 Volvox_carteri_Female,
[3] 		4 Eudorina_sp._female,
[4] 		5 'Volvox africanus Short_MT_like',
[5] 		6 Volvox_reticuliferus_Male,
[6] 		7 Chlamydomonas_reinhardtii_Minus,
[7] 		8 Chlamydomonas_reinhardtii_Plus,
[8] 		9 Gonium_pectorale_Minus,
[9] 		10 Gonium_pectorale_Plus,
[10] 		11 Volvox_carteri_Male,
[11] 		12 Eudorina_sp._male;
	TREE PAUP_1 = (((7:0.0,8:0.0):0.159729,(9:0.0,10:0.0):0.212856):0.0964295,((4:0.200257,(1:0.020765,2:0.051302):0.16724):0.03832,(3:0.20463,(11:0.150978,(12:0.112998,(5:0.084097,6:0.004782):0.146365):0.00000984658):0.074538):0.00271):0.0964295);

END;