#NEXUS [written Wed Aug 12 17:18:09 CEST 2020 by Mesquite version 3.61 (build 927) at DNPW-PP-100/134.76.71.100] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=36; TAXLABELS Trichoderma_atroviride_IPP0316_MT793743 Trichoderma_harzianum_IPP0318_MT793742 Trichoderma_harzianum_IPP0319_MT793741 Trichoderma_harzianum_IPP0320_MT793740 Trichoderma_afarasin_DIS314F_FJ463400 Trichoderma_afroharzianum_CBS124620_FJ463301 Trichoderma_atrobrunneum_SZMC24206_MN520085 Trichoderma_atroviride_SZMC24276_MN520050 Trichoderma_camerunense_GJS99230_AF348107 Trichoderma_endophyticum_TR22_KT619074 Trichoderma_guizhouense_SZMC24281_MN520084 Trichoderma_harzianum_CBS22695_AY605833 Trichoderma_inhamatum_TR32_KT619076 Trichoderma_lentiforme_CEN1428_MK696667 Trichoderma_lixii_DAOM229978_FJ716620 Trichoderma_neotropicale_LA11_HQ022771 Trichoderma_pyramidale_Tpyle24_MT081438 Trichoderma_rifaii_DIS355B_FJ463324 Trichoderma_simmonsii_SZMC26773_MN520083 Trichoderma_tomentosum_MIAE00031_HM176579 Trichoderma_virens_KSSO169_MN555264 Trichoderma_harzianum_T12_MT793739 Trichoderma_harzianum_T39_MT793738 Trichoderma_afroharzianum_Tri1_MT793729 Trichoderma_harzianum_Tri11_MT793736 Trichoderma_harzianum_Tri10_MT793737 Trichoderma_harzianum_Tri12_MT793735 Trichoderma_harzianum_Tri14_MT793734 Trichoderma_afroharzianum_Tri2_MT793728 Trichoderma_afroharzianum_Tri3_MT793727 Trichoderma_tomentosum_Tri4_MT793725 Trichoderma_afroharzianum_Tri5_MT793726 Trichoderma_harzianum_Tri6_MT793732 Trichoderma_harzianum_Tri7_MT793731 Trichoderma_harzianum_Tri8_MT793730 Trichoderma_harzianum_Tri9_MT793733 ; END; BEGIN CHARACTERS; TITLE ClustalW_Alignment_Trichoderma_TEF1alpha; DIMENSIONS NCHAR=473; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Trichoderma_atroviride_IPP0316_MT793743 ACAATCGTGCCCGACAATTCTGTCCTCAGTCTTGTCATTTTTTTTCCTTC--------ACACCCCGCTTTA-CCTGTCTACCCCTCCTTTG--GCACAGCAAAATTTTCTG----GCTGCCTTGCTTGGCTTTTAGTGGGGTGCCAACTTTTTTTTGTTTGGCTGCAACCCCGCTATCGCCAC------TGTCCCGTCCCAACGAGTTGTACTCAATTGCATCGTCTTCTCCATCTCTGTGTGGTTCATTGTGCTAATCATGCTT-CAATCAATAGGAAGCCGCCGAGCTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTT---TCGCTTTTCCTCATTGATACTTGGAGACCAAGATTCTAACGTGCCG- Trichoderma_harzianum_IPP0318_MT793742 TCAATTGTGCCCGACAATTCTGCAGAGAATTTTCGTGT-CGACAATTTTTC------ATCACCCCGCTTTG----CATTACCCCTCCTTTGCAGCGACGCAAATTTTTTT-----GCTGTCGT--TTGGTTT-TAGTGGGGTTTCTTGTGCA-CCCCA----CTAGCTCACTACT-TTTTTTC------TGCTTCGCTCTCACTTCCCAGCCATCATT-CAACGTGCTCTGTGTC--ATCACTTTCAGCGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAATTTCACACAGCGATTACAAGCCAG--TGCTAACAAGCAA- Trichoderma_harzianum_IPP0319_MT793741 TCAATTGTGCCCGACAATTCTGCAGAGAATTTTCGTGT-CGACAATTTTTC------ATCACCCCGCTTTG----CATTACCCCTCCTTTGCAGCGACGCAAATTTTTTT-----GCTGTCGT--TTGGTTT-TAGTGGGGTTTCTTGTGCA-CCCCA----CTAGCTCACTACT-TTTTTTC------TGCTTCGCTCTCACTTCCCAGCCATCATT-CAACGTGCTCTGTGTC--ATCACTTTCAGCGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAATTTCACACAGCGATTACAAGCCAG--TGCTAACAAGCAA- Trichoderma_harzianum_IPP0320_MT793740 TCAATTGTGCCCGACAATTCTGCAGAGAATTTTCGTGT-CGACAATTTTTC------ATCACCCCGCTTTG----CATTACCCCTCCTTTGCAGCGACGCAAATTTTTTT-----GCTGTCGT--TTGGTTT-TAGTGGGGTTTCTTGTGCA-CCCCA----CTAGCTCACTACT-TTTTTTC------TGCTTCGCTCTCACTTCCCAGCCATCATT-CAACGTGCTCTGTGTC--ATCACTTTCAGCGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAATTTCACACAGCGATTACAAGCCAG--TGCTAACAAGCAA- Trichoderma_afarasin_DIS314F_FJ463400 TCAATTGTGCCCGACAATTCTGCAGAGAATTTTGGTGT-CGACAATTTTTC------ATCACCCCGCTTTG----CATTACCCCTCCTTTGCAGCGACGCAAAATTTTTTT----GCTGTCGT--TTGGTTT-TAGTGGGGTTTCTTGTGCA-CCCCCA---CTAGCTCACTGCTTTTTTTCC------TGCTTGGCTCTCACTTCCCGGCCATCATT-CAACGTGCTCTGTGTCTCGTCACTTTCAGCGATGCTAACCGCTTTT-CTATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCTATCAACTTCACACAGCGATTACAAGCCAG--TGCTAACAAGCAA- Trichoderma_afroharzianum_CBS124620_FJ463301 TCAATTGTGCCCGACAATTCTGCAGAGAATTTTCGTGT-CGACAATTTTT-C-----ATCACCCCGCTTTC----CATTACCCCTCCTTTGCAGCGACGCAAATT-TTTTT---TGCTGTCGT--TTGGTTTTTAGTGGGGTTCTCTGTGCAACCCCAC----TAGCTCCCTGCTTTTTCCT--------GCTTCACTCTCACTTCCTCGTCATCATT-CAACGTGCTCTGCGTCTTTGGTCATTCAGCGACGCTAACCACTTTT-ACATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGTCT---TCACTAAGTTCATGCTGCAATTGCGGACCAG--TGCTAACAGGCAA- Trichoderma_atrobrunneum_SZMC24206_MN520085 TCAATTGTGCCCGACAATTCTGCAGAGAATTTTCGTGT-CGACAATTTTT-C-----ATCACCCCGCTTTC----CATTACCCCTCCTTTGCAGCGACGCAAAAAAATTTT---TGCTGTCGT--TTGGTTTTTAGTGGGGTTCTCTGTGCAACCCCAC----TAGCTCACTGCTTTTTCCT--------GCTTCACTCTCACTTCCTAGTCATCATT-CAACACGCTTTGTGGCTTTGGTCATTCAGCGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCC---TCATCAATCTCATGGTGCAACTGCGAGCTAG--TGCTAACATGCAA- Trichoderma_atroviride_SZMC24276_MN520050 ACAATCGTGCCCGACAATTCTGTCCTCAGTCTTGTCATTTTTTTTCCCTCGCAGCATCACACCCCGCTTTA-CCTGTCTACCCCTCCTTTG--GCACAGCAAAATTTTCTG----GCTGCCTTGCTTGGCTTTTAGTGGGGTGCCAACTTTTTTTTGTTTGGCTGCAACCCCGCTATCGCGAC------TGTCCCGTCCCAACGAATTGTACTCAATTGCATCGTCTTCTCCATCTCTGTGTGGTTCATTGTGCTAATCATGCTT-CAATCAATAGGAAGCCGCCGAGCTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTT---TCGCTTTTCCTCATTGATACTTGGAGACCAAGATTCTAACGTGCCG- Trichoderma_camerunense_GJS99230_AF348107 TCAATTGTGCCCGACAATTCTGCAGAGAATTTTCTTGT-CAACAATTTTTC------ATCACCCCGCTTTG----CATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTT----GCTGTCGT--TTGGTTT-TAGTGGGGTTTCTTGTGCA-CCCCA----CTAGCTCACTACT-TTTTTTC------TGCTTCGCTCTCACTTCCCAGCCATCATT-CAACGTGCTCCGTGTC--ATCACTTTCAGCGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAACTTCACACAGCGATCACAAGCCAG--TGCTAACAAGCAA- Trichoderma_endophyticum_TR22_KT619074 TCAATTGTGCCCGACAATTCTGCAGAGAATTTTCGTGT-CGACAATTTTTTC-----ATCACCCCGCTTTG----CATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTTT---GCTGTTGT--TTGGTTT-TAGTGGGGTTTCTTGTGCA-CCCCCA---CTAACTCACTGCTTTTTTTTC------TGCTTCGCTCTCACTTCCCAGCCATCATT-CAACGTGCTCTGTGTCTCGTCACTTTCAGCGATGCTAACCGCTTTT-CTATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAACTTCACACAGCGATTACAAGCCAG--TGCTAACAAGCAA- Trichoderma_guizhouense_SZMC24281_MN520084 TCAATTGTGCCCGACAATTCTT--CAGACTTTTTGGGT-CGACAATTTTT-C-----GTCACCCCGCTTTC----CATTACCCCTCCTTTGCAGCGACGCAAATT-TTTTT---TGCTGCCGT--TTGATTTTTAGTGGGGTTCTCTGTGCAACCCCAC----TAGCTCACTGCTTTTT-TT--------GTGCTTCATTCACTTCCCAGTCATCATT-CAACGTGCTCTGTGTCTTTGGTTATTCAACGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTACTTCATCAACTTCATGCTGCAATTGCAACCCAG--TGCTAACAGGCAA- Trichoderma_harzianum_CBS22695_AY605833 TTAATTGTGCCCGATAATTCTGCAGAGAATTTTCGTGT-CGACAATTTTTC------ATCACCCCGATTTG----CATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTG----GCTGTCGT--TTGGTTT-TAGTGGGGTTTCTCGTGCA-CCCCA----CTAGGTCACTGCT-TTTTTTC------TGCTTCGCTCTTACTGCCCAGCCATCATT-CAACGTGCTCTGCGTCTCATCACTTTCAGCGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAACTTCACACAGCGATTACAAGCCAG--TGCTAACAAGCAA- Trichoderma_inhamatum_TR32_KT619076 TCAATTGAACCCGACAATTCTGAAGAGAATTTTCGTGTTCGACAATTTTT-C-----ATCACCCCGCTTTC----CATTACCCCTCCTTTGCAGCGACGCAAAT--TTTTT---TGCTGTCTG--TTGGTTTT-AGTGGGATTTCTTGTGCA-CCCCAC----TAGCTCACCTGTATTTTTCT---------GCTTCACTCACTTCCCAGCCATCATT-CAGCGTGTTCTGTGTCCTTGGTCATTCAGCGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTTCTTCATTAACTTCATGCTTCAATTGCAAGTCAG--TGCTAACAGGCAA- Trichoderma_lentiforme_CEN1428_MK696667 TCAATTATGCCCGACGATTCTGAAGAGAATTTTCGTGT-CGACAATTTTT-C-----GTCACCCCGCTTTC----CATTACCCCTCCTTTGCAGCGACGCAAAT--TTTTT---TGCTGTCTT--TTGGTTTT-AGTGGGGTTTCTTGTGCA-CCCCAC----TAGCTCACTGCTTTTTTTTTTTTTTTTTGGCTTCACTCTCACTTCC-CCGCCATT-CAACATACTCTGTGTCTTTGGTCATTCAGCGATGCTAACCACTTTT-CCGTCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTTCTTCATCAACTTCATGCTTCAATTGCAAGCCAG--TGCTAACAGGCAA- Trichoderma_lixii_DAOM229978_FJ716620 --------GCCCGACGATTCTGCAGAGAATTTTCGTGT-CGACAATTTTT-C-----ATCACCCCGCTTTC----CGTTACCCCTCCTTTGCAGCGACGCAAATTTTTTTTTTTTGCTGTCGT--TTGATTTT-AGTGGGGTTTCTTGTGCA-CCCCAC----TAGCTCACTGCATTTTTTT-------CGCTTCACTCTCACTTCCCAGCCAT---T-CAACGTGCTCTGTGTCTTTGGTCATTCAGCGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Trichoderma_neotropicale_LA11_HQ022771 -CAAT-GTGCCCGACAAT--TGCAGAGAATTTG---GT-CGACAATTTTTT------ATCACCCCGCTTTG----CATTACCCCTCCTTTGCAG-GACGCAAAAATTTTTT----GCTGTTGT--TTGGTTT-AGGGGG----TTTTGTGCA-CCCCC----CTAACTCACTGCTTTTTTTTC------TGCTTCGCTCTCACTTCCCAGCCATCATT-CAACG-GCTCGGT--CTCGTCACTTTCAC--ATGC-AACCGCTTTT-CTATCAA-AGGAAGCCGCC-AACTCGGCAAGGGTTCCTTCAAG-ACGCT-GGGTTCTTGACAAGCTCAAGGCC-AGCG-GAGCG-GGTATCACCATCGAC-TTGCTCTG-GGAAGTTCGAA--CCCCAAGTACTATGTCACCGC--ATGGTATGTTCTTTCCATCAACTTCA-ACAGCGATTACAAGGCCA--GGCTAACAAGCAA- Trichoderma_pyramidale_Tpyle24_MT081438 TCAATTGTGCCCGACAATTCTGCAGAGAATTTTCGTGT-CGACAATTTTT-C-----AGCACCCCGCTTTC----CATTACCCCTCCTTTGCAGCGACGCAAATTTTTTT----TGCTGCCGT--TTGATTTTTAGTGGGGTTCTTTGTGCAACCCCAC----TAGCTCACTGCTTTTTTTTG------TGCTTCACTCTCACTTCCCAGCCATCATT-CAACGTGCTCTGTGTCTTTGGTCATTCAGCGATGCTAACCACTTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGCCT---TCATCAATCTCATGGTGCAACTGCGAGCTAG--TGCTAACATGCAA- Trichoderma_rifaii_DIS355B_FJ463324 TCAATTGTGCCCGACAATTCTGCAGAGAATTTTCGCGT-CGACAATTTTTC------ATCACCCCGCTTTG----CATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTT----GCTGTCGT--TTGGTTT-TAGTGGGGTTTCTTGTGCA-CCCCA----CTAGCTCACTACT-TTTTTTC------TGCTTCGCTCTCACTTCCCAGCCACCATT-CAACGTGCTCTGTGTC--ATCACTTTCAGCGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAAGTTCACACAGCGATTACAAGCCGG--TGCTAACAAGCAA- Trichoderma_simmonsii_SZMC26773_MN520083 -TCATTGTGTCCGACAATTCTGCAGAGAATTTTCGTGT-CAACAATTTTTC------ATCACCCCGCTTTG----CATTACCCCTCCTTTGCAGCGACGCAAAAATTTTTT----GCTGTCGT--TTGGTTTTAAGTGGGGTTTCTTGTGCA-CCCCA----CTAGCTCG------TTTTTTC------TGCTTCGCTCTCACTTCCCAGCCATCATT-CAACGTATTCTGTGTCTCGTCACTTTCAGCGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAATTTCACACAGCGATTACAAGCCAG--TGCTAACAAGCAA- Trichoderma_tomentosum_MIAE00031_HM176579 TCAATTGTGCTCGACAATTCTGGAAAGAATTATCGTGT-CAACAATTTTTC------ACCACCCCGCTTTC----CATTACCCCTCCTTTGCAGCGACGCAAATTTTTTT-----GCTGTCTT--TTTTGTTTTAGTGGGGTTCTCTGTGTA-CCCCAC----TAGCTCACTGCTTTTTTTTG--------TTTCACTCTCACTACCCAGTCGTCACT-CAACGCGCTTTTTGTGTCGTCACTTTCAACGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTAATCCACCAACTTCATGCATCAATTGCAAGT------------------- Trichoderma_virens_KSSO169_MN555264 TCAATTGTGCTCGACAATTCTCTACAGAATCATCGAGG-CAACAATTTTTTC-----GTCACCCCGCTTTCGTTCCATTACCCCTCCTTTGCAGCGACGCAAAA--TTTTT---TGCTGCC-T--CTGGTTTTTAGTGGGGGTGCACCAGCAACCCCACCA-CTACCTCGCTGCTCTTTGCC---------CTTGTCTATCACTTCCCAGTCCTCATT-CAACAATCTGTGCCTCGTTAGCTG--CAGCGATGCTAACCACCATT-CCCTCAACAGGAAGCCGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Trichoderma_harzianum_T12_MT793739 TTAATTGTGCCCGATAATTCTGCAGAGAATTTTCGTGT-CGACAATTTTTC------ATCACCCCGATTTG----CATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTG----GCTGTCGT--TTGGTTT-TAGTGGGGTTTCTCGTGCA-CCCCA----CTAGGTCACTGCT-TTTTTTC------TGCTTCGCTCTTACTGCCCAGCCATCATT-CAACGTGCTCTGCGTCTCATCACTTTCAGCGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAACTTCACACAGCGATTACAAGCCAG--TGCTAACAAGCAA- Trichoderma_harzianum_T39_MT793738 TTAATTGTGCCCGATAATTCTGCAGAGAATTTTCGTGT-CGACAATTTTTC------ATCACCCCGATTTG----CATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTG----GCTGTCGT--TTGGTTT-TAGTGGGGTTTCTCGTGCA-CCCCA----CTAGGTCACTGCT-TTTTTTC------TGCTTCGCTCTTACTGCCCAGCCATCATT-CAACGTGCTCTGCGTCTCATCACTTTCAGCGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAACTTCACACAGCGATTACAAGCCAG--TGCTAACAAGCAA- Trichoderma_afroharzianum_Tri1_MT793729 TCAATTGTGCCCGACAATTCTGCAGAGAATTTTCGTGT-CGACAATTTTT-C-----ATCACCCCGCTTTC----CATTACCCCTCCTTTGCAGCGACGCAAATT-TTTTT---TGCTGTCGT--TTGGTTTTTAGTGGGGTTCTCTGTGCAACCCCAC----TAGCTCCCTGCTTTTTCCT--------GCTTCACCTTCACTTCCTCGTCATCATT-CAACGTGCTCTGCGTCTTTGGTCATTCAGCGACGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGTCT---TCACTAAGTTCATGCTGCAATTGCGGACCAG--TGCTAACAGGCAA- Trichoderma_harzianum_Tri11_MT793736 TCAATTGTGCCCGACAATTCTGCAGAGAATTTTCGTGT-CGACAATTTTTC------ATCACCCCGCTTTG----CATTACCCCTCCTTTGCAGCGACGCAAATTTTTTT-----GCTGTCGT--TTGGTTT-TAGTGGGGTTTCTTGTGCA-CCCCA----CTAGCTCACTACT-TTTTTTC------TGCTTCGCTCTCACTTCCCAGCCATCATT-CAACGTGCTCTGTGTC--ATCACTTTCAGCGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAATTTCACACAGCGATTACAAGCCAG--TGCTAACAAGCAA- Trichoderma_harzianum_Tri10_MT793737 TCAATTGTGCCCGACAATTCTGCAGAGAATTTTCGTGT-CGACAATTTTTC------ATCACCCCGCTTTG----CATTACCCCTCCTTTGCAGCGACGCAAATTTTTTT-----GCTGTCGT--TTGGTTT-TAGTGGGGTTTCTTGTGCA-CCCCA----CTAGCTCACTACT-TTTTTTC------TGCTTCGCTCTCACTTCCCAGCCATCATT-CAACGTGCTCTGTGTC--ATCACTTTCAGCGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAATTTCACACAGCGATTACAAGCCAG--TGCTAACAAGCAA- Trichoderma_harzianum_Tri12_MT793735 TCAATTGTGCCCGACAATTCTGCAGAGAATTTTCGTGT-CGACAATTTTTC------ATCACCCCGCTTTG----CATTACCCCTCCTTTGCAGCGACGCAAATTTTTTT-----GCTGTCGT--TTGGTTT-TAGTGGGGTTTCTTGTGCA-CCCCA----CTAGCTCACTACT-TTTTTTC------TGCTTCGCTCTCACTTCCCAGCCATCATT-CAACGTGCTCTGTGTC--ATCACTTTCAGCGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAATTTCACACAGCGATTACAAGCCAG--TGCTAACAAGCAA- Trichoderma_harzianum_Tri14_MT793734 TCAATTGTGCCCGACAATTCTGCAGAGAATTTTCGTGT-CGACAATTTTTC------ATCACCCCGCTTTG----CATTACCCCTCCTTTGCAGCGACGCAAATTTTTTT-----GCTGTCGT--TTGGTTT-TAGTGGGGTTTCTTGTGCA-CCCCA----CTAGCTCACTACT-TTTTTTC------TGCTTCGCTCTCACTTCCCAGCCATCATT-CAACGTGCTCTGTGTC--ATCACTTTCAGCGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAATTTCACACAGCGATTACAAGCCAG--TGCTAACAAGCAA- Trichoderma_afroharzianum_Tri2_MT793728 TCAATTGTGCCCGACAATTCTGCAGAGAATTTTCGTGT-CGACAATTTTT-C-----ATCACCCCGCTTTC----CATTACCCCTCCTTTGCAGCGACGCAAATT-TTTTT---TGCTGTCGT--TTGGTTTTTAGTGGGGTTCTCTGTGCAACCCCAC----TAGCTCCCTGCTTTTTCCT--------GCTTCACCTTCACTTCCTCGTCATCATT-CAACGTGCTCTGCGTCTTTGGTCATTCAGCGACGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGTCT---TCACTAAGTTCATGCTGCAATTGCGGACCAG--TGCTAACAGGCAA- Trichoderma_afroharzianum_Tri3_MT793727 TCAATTGTGCCCGACAATTCTGCAGAGAATTTTCGTGT-CGACAATTTTT-C-----ATCACCCCGCTTTC----CATTACCCCTCCTTTGCAGCGACGCAAATT-TTTTT---TGCTGTCGT--TTGGTTTTTAGTGGGGTTCTCTGTGCAACCCCAC----TAGCTCCCTGCTTTTTCCT--------GCTTCACCTTCACTTCCTCGTCATCATT-CAACGTGCTCTGCGTCTTTGGTCATTCAGCGACGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGTCT---TCACTAAGTTCATGCTGCAATTGCGGACCAG--TGCTAACAGGCAA- Trichoderma_tomentosum_Tri4_MT793725 TCAATTGTGCTCGACAATTCTGGAAAGAATTATCGTGT-CAACAATTTTTC------ACCACCCCGCTTTC----CATTACCCCTCCTTTGCAGCGACGCAAATTTTTTT-----GCTGTCTT--TTTTGTTTTAGTGGGGTTCTCTGTGTA-CCCCAC----TAGCTCACTGCTTTTTTTTG--------TTTCACTCTCACTACCCAGTCGTCACT-CAACGCGCTTTTTGTGTCGTCACTTTCAACGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTAATCCACCAACTTCATGCATCAATTGCAAGTCAG--TGCTAACAAGAGG- Trichoderma_afroharzianum_Tri5_MT793726 TCAATTGTGCCCGACAATTCTGCAGAGAATTTTCGTGT-CGACAATTTTT-C-----ATCACCCCGCTTTC----CATTACCCCTCCTTTGCAGCGACGCAAATT-TTTTT---TGCTGTCGT--TTGGTTTTTAGTGGGGTTCTCTGTGCAACCCCAC----TAGCTCCCTGCTTTTTCCT--------GCTTCACCTTCACTTCCTCGTCATCATT-CAACGTGCTCTGCGTCTTTGGTCATTCAGCGACGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGTCT---TCACTAAGTTCATGCTGCAATTGCGGACCAG--TGCTAACAGGCAA- Trichoderma_harzianum_Tri6_MT793732 TCAATTGTGCCCGACAATTCTGCAGAGAATTTTCGTGT-CGACAATTTTTC------ATCACCCCGCTTTG----CATTACCCCTCCTTTGCAGCGACGCAAATTTTTTT-----GCTGTCGT--TTGGTTT-TAGTGGGGTTTCTTGTGCA-CCCCA----CTAGCTCACTACT-TTTTTTC------TGCTTCGCTCTCACTTCCCAGCCATCATT-CAACGTGCTCTGTGTC--ATCACTTTCAGCGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAATTTCACACAGCGATTACAAGCCAG--TGCTAACAAGCAA- Trichoderma_harzianum_Tri7_MT793731 TCAATTGTGCCCGACAATTCTGCAGAGAATTTTCGTGT-CGACAATTTTTC------ATCACCCCGCTTTG----CATTACCCCTCCTTTGCAGCGACGCAAATTTTTTT-----GCTGTCGT--TTGGTTT-TAGTGGGGTTTCTTGTGCA-CCCCA----CTAGCTCACTACT-TTTTTTC------TGCTTCGCTCTCACTTCCCAGCCATCATT-CAACGTGCTCTGTGTC--ATCACTTTCAGCGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAATTTCACACAGCGATTACAAGCCAG--TGCTAACAAGCAA- Trichoderma_harzianum_Tri8_MT793730 TCAATTGTGCCCGACAATTCTGCAGAGAATTTTCGTGT-CGACAATTTTTC------ATCACCCCGCTTTG----CATTACCCCTCCTTTGCAGCGACGCAAATTTTTTT-----GCTGTCGT--TTGGTTT-TAGTGGGGTTTCTTGTGCA-CCCCA----CTAGCTCACTACT-TTTTTTC------TGCTTCGCTCTCACTTCCCAGCCATCATT-CAACGTGCTCTGTGTC--ATCACTTTCAGCGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAATTTCACACAGCGATTACAAGCCAG--TGCTAACAAGCAA- Trichoderma_harzianum_Tri9_MT793733 TCAATTGTGCCCGACAATTCTGCAGAGAATTTTCGTGT-CGACAATTTTTC------ATCACCCCGCTTTG----CATTACCCCTCCTTTGCAGCGACGCAAATTTTTTT-----GCTGTCGT--TTGGTTT-TAGTGGGGTTTCTTGTGCA-CCCCA----CTAGCTCACTACT-TTTTTTC------TGCTTCGCTCTCACTTCCCAGCCATCATT-CAACGTGCTCTGTGTC--ATCACTTTCAGCGATGCTAACCACTTTT-CCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAATTTCACACAGCGATTACAAGCCAG--TGCTAACAAGCAA- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 473; END; BEGIN NOTES; TAXABITS NAME = newlyAddedTaxon on = 1 - 36; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 473; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 473; END; BEGIN TREES; Title ML_analysis_Trichoderma_TEF1alpha; ID 0173e2edf62d4; LINK Taxa = Taxa; TRANSLATE [0] 1 Trichoderma_atroviride_IPP0316_MT793743, [1] 2 Trichoderma_harzianum_IPP0318_MT793742, [2] 3 Trichoderma_harzianum_IPP0319_MT793741, [3] 4 Trichoderma_harzianum_IPP0320_MT793740, [4] 5 Trichoderma_afarasin_DIS314F_FJ463400, [5] 6 Trichoderma_afroharzianum_CBS124620_FJ463301, [6] 7 Trichoderma_atrobrunneum_SZMC24206_MN520085, [7] 8 Trichoderma_atroviride_SZMC24276_MN520050, [8] 9 Trichoderma_camerunense_GJS99230_AF348107, [9] 10 Trichoderma_endophyticum_TR22_KT619074, [10] 11 Trichoderma_guizhouense_SZMC24281_MN520084, [11] 12 Trichoderma_harzianum_CBS22695_AY605833, [12] 13 Trichoderma_inhamatum_TR32_KT619076, [13] 14 Trichoderma_lentiforme_CEN1428_MK696667, [14] 15 Trichoderma_lixii_DAOM229978_FJ716620, [15] 16 Trichoderma_neotropicale_LA11_HQ022771, [16] 17 Trichoderma_pyramidale_Tpyle24_MT081438, [17] 18 Trichoderma_rifaii_DIS355B_FJ463324, [18] 19 Trichoderma_simmonsii_SZMC26773_MN520083, [19] 20 Trichoderma_tomentosum_MIAE00031_HM176579, [20] 21 Trichoderma_virens_KSSO169_MN555264, [21] 22 Trichoderma_harzianum_T12_MT793739, [22] 23 Trichoderma_harzianum_T39_MT793738, [23] 24 Trichoderma_afroharzianum_Tri1_MT793729, [24] 25 Trichoderma_harzianum_Tri11_MT793736, [25] 26 Trichoderma_harzianum_Tri10_MT793737, [26] 27 Trichoderma_harzianum_Tri12_MT793735, [27] 28 Trichoderma_harzianum_Tri14_MT793734, [28] 29 Trichoderma_afroharzianum_Tri2_MT793728, [29] 30 Trichoderma_afroharzianum_Tri3_MT793727, [30] 31 Trichoderma_tomentosum_Tri4_MT793725, [31] 32 Trichoderma_afroharzianum_Tri5_MT793726, [32] 33 Trichoderma_harzianum_Tri6_MT793732, [33] 34 Trichoderma_harzianum_Tri7_MT793731, [34] 35 Trichoderma_harzianum_Tri8_MT793730, [35] 36 Trichoderma_harzianum_Tri9_MT793733; TREE Imported_tree_1 = ((((((((((((((((((((35:0.0,36:0.0):0.0[%bootstrapFrequency = 0.059 ],34:0.0):0.0[%bootstrapFrequency = 0.011 ],33:0.0):0.0[%bootstrapFrequency = 0.001 ],28:0.0):0.0[%bootstrapFrequency = 0.002 ],27:0.0):0.0[%bootstrapFrequency = 0.001 ],26:0.0):0.0[%bootstrapFrequency = 0.002 ],25:0.0):0.0[%bootstrapFrequency = 0.001 ],4:0.0):0.0[%bootstrapFrequency = 0.007 ],3:0.0):0.0[%bootstrapFrequency = 0.064 ],2:0.0):0.00113459[%bootstrapFrequency = 0.718 ],18:0.00917336):0.0012096[%bootstrapFrequency = 0.545 ],9:0.00924538):0.00231037[%bootstrapFrequency = 0.365 ],(12:0.0,(22:0.0,23:0.0):0.0[%bootstrapFrequency = 0.339 ]):0.02090918[%bootstrapFrequency = 1 ]):0.00228353[%bootstrapFrequency = 0.298 ],19:0.02587326):0.0[%bootstrapFrequency = 0.188 ],(5:0.01386046,(10:0.0,16:0.04328233):0.00681743[%bootstrapFrequency = 0.753 ]):0.00741301[%bootstrapFrequency = 0.875 ]):0.02358441[%bootstrapFrequency = 0.972 ],(20:0.0,31:0.0):0.07847933[%bootstrapFrequency = 1 ]):0.0223924[%bootstrapFrequency = 0.535 ],15:0.01984694):0.0[%bootstrapFrequency = 0.136 ],((11:0.02164871,21:0.20435513):0.02020904[%bootstrapFrequency = 0.138 ],(13:0.03420687,14:0.03599474):0.00858128[%bootstrapFrequency = 0.837 ]):0.01576614[%bootstrapFrequency = 0.094 ]):0.00869454[%bootstrapFrequency = 0.061 ],(7:0.03204655,17:0.01053782):0.01319605[%bootstrapFrequency = 0.403 ]):0.02773247[%bootstrapFrequency = 0.241 ],(6:0.0023997,(29:0.0,(24:0.0,(30:0.0,32:0.0):0.0[%bootstrapFrequency = 0.214 ]):0.0[%bootstrapFrequency = 0.162 ]):0.00450551[%bootstrapFrequency = 0.879 ]):0.00963386[%bootstrapFrequency = 0.919 ],(1:0.0,8:0.00678204):0.41075546[%bootstrapFrequency = 1 ])[% ] [% ] [% setBetweenDouble = bootstrapFrequency ]; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1597245489559; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3311887031259496987; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2108333943912440860; mqVersion 361; checksumv 0 3 472486929 null getNumChars 473 numChars 473 getNumTaxa 36 numTaxa 36 short true bits 15 states 15 sumSquaresStatesOnly 377832.0 sumSquares 377832.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 286; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 961; setLocation 163 205; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #3311887031259496987 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #3311887031259496987; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1634 889; setLocation 163 205; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #3311887031259496987 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 0173e2edf62d4; toggleUseWeights off; endTell; setAssignedID 1052.1597243765263.6422397168434673109; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1634 889; setLocation 163 205; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientRight; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; setSelectedTaxonHighlightMode 1; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; setTaxonNameStyler #mesquite.trees.NoColorForTaxon.NoColorForTaxon; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2108333943912440860 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 223; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1634 889; setLocation 163 205; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;