#NEXUS [written Thu Sep 24 16:52:07 JST 2020 by Mesquite version 3.61 (build 927) at tsutsumichie-no-iMac.local/202.220.64.189] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=17; TAXLABELS Osmunda_japonica_J6 Osmunda_japonica_J1J2J3J4J5J7J8L1L2L3 Osmunda_regalis_R13 Osmunda_regalis_R14R16USA Osmunda_regalis_R17R18 Osmunda_regalis_R5R6R7R8R9GNI Osmunda_regalis_R10 Osmunda_regalis_R11R12 Osmunda_regalis_R1R2R3H2 Osmunda_hybrida_H1H4H5 Osmunda_regalis_R4 Osmunda_hybrida_H3 Plenasium_vachellii Claytosmunda_claytoniana_CL2 Plenasium_javanicum Plenasium_banksiifolium Claytosmunda_claytoniana_CL1_Japan ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=920; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Osmunda_japonica_J6 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCACTAGGAATAAAGAACGAAGTAACTGGAATTAAATCTTACTGAAACTTATCAAT-GAAGAATTCATAAAATAAGAAGATTATTTTCTCTCTCAGAAGGATCATCTAAAAAGTATGCACCTCAACATATGAGGTGTTAGAAGGACTGACATAGATGTTATGGATACATTTCTTTCATCCGATAGCACCGATTTCGGATCATCGAATAGTAATATATTTCGAATAGAATAGATATTTAGGAATACTCTGAGTCGATTTTTCCTATTCTTCAAGATTCTATTCTTCCACTTATTATTCATTCCATGAAGGAGCCGAATGAAGAGAGACCTTCATGTTCGGTTCTGAATTAGAGATGTTGAGACCATTCATTGACATCGACTATAACCCTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTAATACTACTGGATCATCGGATGGATCAGCTCGATCCATCCCTTCAATCTTTCAAATAAATTTAGTTAATTCCAAATCCGATTCA-TCTCTTCCTTCCCAGCCATATCGTGAACATACAAAAGTATTTGTGTGTTCACGATACAGC Osmunda_japonica_J1J2J3J4J5J7J8L1L2L3 TTGATTTCCCTCCCGATAGAAAAACTTTATTCCTATTGGAGTTCAGATACTTCCCCATGAGCAGTATGGATGGGGAAAGCATCATTCCTGTTGTTCCGCCGTAGAGCCAAACTATTTGGGTGCTGGGATAACAAAGCGGAGTGATTTCGAGATCCGAGAGTCTCGGAATGATTGTTGAAAAATCTATGGATAGCAACCCAATATATTCATTTCATCGTCACTAAATCTTTGATAATGAGATATCGAAGCTGAATAATCATGGAAGAAATAATCCTGGTTTACTTGGATTATCAAACATTTCTTCTTTCAGCCCGGTGAGAAATATTTTCCTAAGGATTGGAGTCACTAGGAATAAAGAACGAAGTAACTGGAATTAAATCTTACTGAAACTTATCAAT-GAAGAATTCATAAAATAAGAAGATTATTTTCTCTCTCAGAAGGATCATCTAAAAAGTATGCACCTCAACATATGAGGTGTTAGAAGGACTGACATAGATGTTATGGATACATTTCTTTCATCCGATAGCACCGATTTCGGATCATCGAATAGTAATATATTTCGAATAGAATAGATATTTAGGAATACTCTGAGTCGATTTTTCCTATTCTTCAAGATTCTATTCTTCCACTTATTATTCATTCCATGAAGGAGCCGAATGAAGAGAGACCTTCATGTTCGGTTCTGAATTAGAGATGTTGAGACCATTCATTGACATCGACTATAACCCTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTAATACTACTGGATCATCGGATGGATCAGCTCGATCCATCCCTTCAATCTTTCAAATAAATTTAGTTAATTCCAAATCCGATTCA-TCTCTTCCTTCCCAGCCATATCGTGAACATACAAAAGTATTTGTGTGTTCACGATACAGC Osmunda_regalis_R13 TTGATTTCCCTCCCGATAGAAAAACTTTATTCCTATTGGAGTTCAGATACTTCCCCATGAGCAGTATGGATGGGGAAAGCATCATTCCTGTTGTTCCGCCGTAGAGCCAAACTAATTGGGTGCTGGGATAACAAAGCGGAGTGATTTCGAGATCCGAGAGTCTCGGAATGATTGTTGAAAAATCTATGGATAGCGACCCAATATATTCATTTCATCGTCACTAAATCTTTGATAATGAGATATCGAAGCTGAATAATCATGGAAGAAATAATTCTGGTTTACTTGGATTATCAAACATTTCTTCTTTCAGCCCGGTGAGAAATATTTTCCTAAGGATTGGAGTCACTAGGAATAAAGAACGAAGTAACTGGAATTAAATCTTACTGAAACTTATCAAT-GAAGAATTCATAAAATAAGAAGATTATTTTCTCTCTCAGAAGGATCATCTAAAAAGTATGCACCTCAACATATGAGGTGTTAGAAGGACTGACATAGATGTTATGGATACATTT----CATCCGATAGCACCGATTTCGGATCATCGAATAGTAATCTATTTCGAATAGAATAGATATTTAGGAATACTCTGAGTCGATTTTTCCTATTCTTCAAGATTCTATTCTTCCACTTATTATTCATTCCATGAAGGAGCCGAATGAAGAGAGACCTTCATGTTCGGTTCTGAATTAGAGATGTTGAGACCATTCATTGACATCGACTATAACCCTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTAATACTACTGGATCATCGGATGGATCAGCTCGATCCATCCCTTCAATCTTTCAAATAAATTTAGTTAATTCCAAATCCGATTCA-TCTCTTCCTTCCCAGCCATATCGTGAACATACAAAAGTATTTGTGTGTTCACGATACA-- Osmunda_regalis_R14R16USA TTGATTTCCCTCCCGATAGAAAAACTTTATTCCTATTGGAGTTCAGATACTTCCCCATGAGCAGTATGGATGGGGAAAGCATCATTCCTGTTGTTCCGCCGTAGAGCCAAACTAATTGGGTGCTGGGATAACAAAGCGGAGTGATTTCGAGATCCGAGAGTCTCGGAATGATTGTTGAAAAATCTATGGATAGCGACCCAATATATTCATTTCATCGTCACTAAATCTTTGATAATGAGATATCGAAGCTGAATAATCATGGAAGAAATAATTCTGGTTTACTTGGATTATCAAACATTTCTTCTTTCAGCCCGGTGAGAAATATTTTCCTAAGGATTGGAGTCACTAGGAATAAAGAACGAAGTAACTGGAATTAAATCTTACTGAAACTTATCAAT-GAAGAATTCATAAAATAAGAAGATTATTTTCTCTCTCAGAAGGATCATCTAAAAAGTATGCACCTCAACATATGAGGTGTTAGAAGGACTGACATAGATGTTATGGATACATTT----CATCCGATAGCACCGATTTCGGATCATCGAATAGTAATCTATTTCGAATAGAATAGATATTTAGGAATACTCTGAGTCGATTTTTCCTATTCTTCAAGATTCTATTCTTCCACTTATTATTCATTCCATGAAGGAGCCGAATGAAGAGAGACCTTCATGTTCGGTTCTGAATTAGAGATGTTGAGACCATTCATTGACATCGACTATAACCCTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTAATACTACTGGATCATCGGATGGATCAGCTCGATCCATCCCTTCAATCTTTCAAATAAATTTAGTTAATTCCAAATCCGATTCA-TCTCTTCCTTCCCAGCCATATCGTGAACATACAAAAGTATTTGTGTGTTCACGATACAGC Osmunda_regalis_R17R18 TTGATTTCCCTCCCGATAGAAAAACTTTATTCCTATTGGAGTTCAGATACTTCCCCATGAGCAGTATGGATGGGGAAAGCATCATTCCTGTTGTTCCGCCGTAGAGCCAAACTAATTGGGTGCTGGGATAACAAAGCGGAGTGATTTCGAGATCCGAGAGTCTCGGAATGATTGTTGAAAAATCTATGGATAGCGACCCAATATATTCATTTCATCGTCACTAAATCTTTGATAATGAGATATCGAAGCTGAATAATCATGGAAGAAATAATTCTGGTTTACTTGGATTATCAAACATTTCTTCTTTCAGCCCGGTGAGAAATATTTTCCTAAGGATTGGAGTCACTAGGAATAAAGAACGAAGTAACTGGAATTAAATCTTACTGAAACTTATCAAT-GAAGAATTCATAAAATAAGAATATTATTTTCTCTCTCAGAAGGATCATCTAAAAAGTATGCACCTCAACATATGAGGTGTTAGAAGGACTGACATAGATGTTATGGATACATTT----CATCCGATAGCACCGATTTCGGATCATCGAATAGTAATCTATTTCGAATAGAATAGATATTTAGGAATACTCTGAGTCGATTTTTCCTATTCTTCAAGATTCTATTCTTCCACTTATTATTCATTCCATGAAGGAGCCGAATGAAGAGAGACCTTCATGTTCGGTTCTGAATTAGAGATGTTGAGACCATTCATTGACATCGACTATAACCCTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTAATACTACTGGATCATCGGATGGATCAGCTCGATCCATCCCTTCAATCTTTCAAATAAATTTAGTTAATTCCAAATCCGATTCA-TCTCTTCCTTCCCAGCCATATCGTGAACATACAAAAGTATTTGTGTGTTCACGATACAGC Osmunda_regalis_R5R6R7R8R9GNI TTGATTTCCCTCCCGATAGAAAAACTTTATTCCTATTGGAGTTCAGATACTTCCCTATGAGCAGTATGGATGGGGAAAGCATCATTCCTGTTGTTCCGCCGTAGAGCCAAACTATTTGGGTGCTGGGATAACAAAGCGGAGTGATTTCGAGATCCGAGAGTCTCGGAATGATTGTTGAAAAATCTATGGATAGCGACCCAATATATTCATTTCATCGTCACTAAATCTTTGATAATGAGATATCGAAGCTGAATAATCATGGAAGAAATAATCCTGGTTTACTTGGATTATCAAACATTTCTTCTTTCAGCCCGGTGAGAAATATTTTCCTAAGGATTGGAGTCACTAGGAATAAAGAACGAAGTAACTGGAATTAAATCTTACTGAAACTTATCAAT-GAAGAATTCATAAAATAAGAAGAATATTTTCTCTCTCAGAAGGATCATCTAAAAAGTATGCACCTCAACATATGAGGTGTTAGAAGGACTGACATAGATGTTATGGATACATTT----CATCCGATAGCACCGATTTCGGATCATCGAATAGTAATATATTTCGAATAGAATAGATATTTAGGAATACTCTGAGTCGATTTTTCCTATTCTTCAAGATTCTATTCTTCCACTTATTATTCATTCCATGAAGGAGCCGAATGAAGAGAGACCTTCATGTTCGGTTCTGAATTAGAGATGTTGAGACCATTCATTGACATCGACTATAACCCTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTAATACTACTGGATCATCGGATGGATCAGCTCGATCCATCCCTTCAATCTTTCAAATAAATTTAGTTAATTCCAAATCCGATTCA-TCTCTTCCTTCCCAGCCATATCGTGAACATACAAAGGTATTTGTGTGTTCACGATACAGC Osmunda_regalis_R10 TTGATTTCCCTCCCGATAGAAAAACTTTATTCCTATTGGAGTTCAGATACTTCCCTATGAGCAGTATGGATGGGGAAAGCATCATTCCTGTTGTTCCGCCGTAGAGCCAAACTATTTGGGTGCTGGGATAACAAAGCGGAGTGATTTCGAGATCCGAGAGTCTCGGAATGATTGTTGAAAAATCTATGGATAGCGACCCAATATATTCATTTCATCGTCACTAAATCTTTGATAATGAGATATCGAAGCTGAATAATCATGGAAGAAATAATCCTGGTTTACTTGGATTATCAAACATTTCTTCTTTCAGCCCGGTGAGAAATATTTTCCTAAGGATTGGAGTCACTAGGAATAAAGAACGAAGTAACTGGAATTAAATCTTACTGAAACTTATCAAT-GAAGAATTCATAAAATAAGAATAATATTTTCTCTCTCAGAAGGATCATCTAAAAAGTATGCACCTCAACATATGAGGTGTTAGAAGGACTGACATAGATGTTATGGATACATTT----CATCCGATAGCACCGATTTCGGATCATCGAATAGTAATATATTTCGAATAGAATAGATATTTAGGAATACTCTGAGTCGATTTTTCCTATTCTTCAAGATTCTATTCTTCCACTTATTATTCATTCCATGAAGGAGCCGAATGAAGAGAGACCTTCATGTTCGGTTCTGAATTAGAGATGTTGAGACCATTCATTGACATCGACTATAACCCTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTAATACTACTGGATCATCGGATGGATCAGCTCGATCCATCCCTTCAATCTTTCAAATAAATTTAGTTAATTCCAAATCCGATTCA-TCTCTTCCTTCCCAGCCATATCGTGAACATACAAAGGTATTTGTGTGTTCACGATACAGC Osmunda_regalis_R11R12 TTGATTTCCCTCCCGATAGAAAAACTTTATTCCTATTGGAGTTCAGATACTTCCCTATGAGCAGTATGAATGGGGAAAGCATCATTCCTGTTGTTCCGCCGTAGAGCCAAACTATTTGGGTGCTAGGATAACAAAGCGGAGTGATTTCGAGATCCGAGAGTCTCGGAATGATTGTTGAAAAATCTATGGATAGCGACCCAATATATTCATTTCATCGTCACTAAATCTTTGATAATGAGATATCGAAGCTGAATAATCATGGAAGAAATAATCCTGGTTTACTTGGATTATCAAACATTTCTTCTTTCAGCCCGGTGAGAAATATTTTCCTAAGGATTGGAGTCACTAGGAATAAAGAACGAAGTAACTGGAATTAAATCTTACTGAAACTTATCAAT-GAAGAATTCATAAAATAAGAAGAATATTTTCTCTCTCAGAAGGATCATCTAAAAAGTATGCACCTCAACATATGAGGTGTTAGAAGGACTGACATAGATGTTATGGATACATTT----CATCCGATAGCACCGATTTCGGATCATCGAATAGTAATATATTTCGAATAGAATAGATATTTAGGAATACTCTGAGTCGATTTTTCCTATTCTTCAAGATTCTATTCTTCCACTTATTATTCATTCCATGAAGGAGCCGAATGAAGAGAGACCTTCATGTTCGGTTCTGAATTAGAGATGTTGAGACCATTCATTGACATCGACTATAACCCTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTAATACTACTGGATCATCGGATGGATCAGCTCGATCCATCCCTTCAATCTTTCAAATAAATTGAGTTAATTCCAAATCTGATTCA-TCTCTTCCTTCCCAGCCATATCGTGAACATACAAAAGTATTTGTGTGTTCACGATACAGC Osmunda_regalis_R1R2R3H2 TTGATTTCCCTCCCGATAGAAAAACTTTATTCCTATTGGAGTTCAGATACTTCCCTATGAGCAGTATGGATGGGGAAAGCATCATTCCTGTTGTTCCGCCGTAGAGCCAAACTATTTGGGTGCTGGGATAACAAAGCGGAGTGATTTCGAGATCCGAGAGTCTCGGAATGATTGTTGAAAAATCTATGGATAGCGACCCAATATATTCATTTCATCGTCACTAAATCTTTGATAATGAGATATCGAAGCTGAATAATCATGGAAGAAATAATCCTGGTTTACTTGGATTATCAAACATTTCTTCTTTCAGCCCGGTGAGAAATATTTTCCTAAGGATTGGAGTCACTAGGAATAAAGAACGAAGTAACTGGAATTAAATCTTACTGAAACTTATCAAT-GAAGAATTCATAAAATAAGAAGAATATTTTCTCTCTCAGAAGGATCATCTAAAAAGTATGCATCTCAACATATGAGGTGTTAGAAGGACTGACATAGATGTTATGGATACATTT----CATCCGATAGCACCGATTTCGAATCATCGAATAGTAATATATTTCGAATAGAATAGATATTTAGGAATACTCTGAGTCGATTTTTCCTATTCTTCAAGATTCTATTCTTCCACTTATTATTCATTCCATGAAGGAGCCGAATGAAGAGAGACCTTCATGTTCGGTTCTGAATTAGAGATGTTGAGACCATTCATTGACATCGACTATAACCCTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTAATACTACTGGATCATCGGATGGATCAGCTCGATCCATCCCTTCAATCTTTCAAATAAATTTAGTTAATTCCAAATCCGATTCA-TCTCTTCCTTCCCAGCCATATCGTGAACATACAAAAGTATTTGTGTGTTCACGATACAGC Osmunda_hybrida_H1H4H5 TTGATTTCCCTCCCGATAGAAAAACTTTATTCCTATTGGAGTTCAGATACTTCCCTATGAGCAGTATGGATGGGGAAAGCATCATTCCTGTTGTTCCGCCGTAGAGCCAAACTATTTGGGTGCTGGGATAACAAAGCGGAGTGATTTCGAGATCCGAGAGTCTCGGAATGATTGTTGAAAAATCTATGGATAGCGACCCAATATATTCATTTCATCGTCACTAAATCTTTGATAATGAGATATCGAAGCTGAATAATCATGGAAGAAATAATCCTGGTTTACTTGGATTATCAAACATTTCTTCTTTCAGCCCGGTGAGAAATATTTTCCTAAGGATTGGAGTCACTAGGAATAAAGAACGAAGTAACTGGAATTAAATCTTACTGAAACTTATCAAT-GAAGAATTCATAAAATAAGAAGAATATTTTCTCTCTCAGAAGGATCATCTAAAAAGTATGCATCTCAAAATATGAGGTGTTAGAAGGACTGACATAGATGTTATGGATACATTT----CATCCGATAGCACCGATTTCGAATCATCGAATAGTAATATATTTCGAATAGAATAGATATTTAGGAATACTCTGAGTCGATTTTTCCTATTCTTCAAGATTCTATTCTTCCACTTATTATTCATTCCATGAAGGAGCCGAATGAAGAGAGACCTTCATGTTCGGTTCTGAATTAGAGATGTTGAGACCATTCATTGACATCGACTATAACCCTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTAATACTACTGGATCATCGGATGGATCAGCTCGATCCATCCCTTCAATCTTTCAAATAAATTTAGTTAATTCCAAATCCGATTCA-TCTCTTCCTTCCCAGCCATATCGTGAACATACAAAAGTATTTGTGTGTTCACGATACAGC Osmunda_regalis_R4 TTGATTTCCCTCCCGATAGAAAAACTTTATTCCTATTGGAGTTCAGATACTTCCCTATGAGCAGTATGGATGGGGAAAGCATCATTCCTGTTGTTCCGCCGTAGAGCCAAACTATTTGGGTGCTGGGATAACAAAGCGGAGTGATTTCGAGATCCGAGAGTCTCGGAATGATTGTTGAAAAATCTATGGATAGCGACCCAATATATTCATTTCATCGTCACTAAATCTTTGATAATGAGATATCGAAGCTGAATAATCATGGAAGAAATAATCCTGGTTTACTTGGATTATCAAACATTTCTTCTTTCAGCCCGGTGAGAAATATTTTCCTAAGGATTGGAGTCACTAGGAATAAAGAACGAAGTAACTGGAATTAAATCTTACTGAAACTTATCAAT-GAAGAATTCATAAAATAAGAAGAATATTTTCTCTCTCAGAAGGATCATCTAAAAAGTATGCATCTCAACATATGAGGTGTTAGAAGGACTGACATAGATGTTATGGATACATTT----CATCCGATAGCACCGATTTCGAATCATCGAATAGTAATGTATTTCGAATAGAATAGATATTTAGGAATACTCTGAGTCGATTTTTCCTATTCTTCAAGATTCTATTCTTCCACTTATTATTCATTCCATGAAGGAGCCGAATGAAGAGAGACCTTCATGTTCGGTTCTGAATTAGAGATGTTGAGACCATTCATTGACATCGACTATAACCCTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTAATACTACTGGATCATCGGATGGATCAGCTCGATCCATCCCTTCAATCTTTCAAATAAATTTAGTTAATTCCAAATCCGATTCA-TCTCTTCCTTCCCAGCCATATCGTGAACATACAAAAGTATTTGTGTGTTCACGATACAGC Osmunda_hybrida_H3 TTGATTTCCCTCCCGATAGAAAAACTTTATTCCTATTGGAGTTCAGATACTTCCCTATGAGCAGTATGGATGGGGAAAGCATCATTCCTGTTGTTCCGCCGTAGAGCCAAACTATTTGGGTGCTGGGATAACAAAGCGGAGTGATTTCGAGATCCGAGAGTCTCGGAATGATTGTTGAAAAATCTATGGATAGCGACCTAATATATTCATTTCATCGTCACTAAATCTTTGATAATGAGATATCGAAGCTGAATAATCATGGAAGAAATAATCCTGGTTTACTTGGATTATCAAACATTTCTTCTTTCAGCCCGGTGAGAAATATTTTCCTAAGGATTGGAGTCACTAGGAATAAAGAACGAAGTAACTGGAATTAAATCTTACTGAAACTTATCAAT-GAAGAATTCATAAAATAAGAAGAATATTTTCTCTCTCAGAAGGATCATCTAAAAAGTATGCATCTCAACATATGAGGTGTTAGAAGGACTGACATAGATGTTATGGATACATTT----CATCCGATAGCACCGATTTCGGATCATCGAATAGTAATATATTTCGAATAGAATAGATATTTAGGAATACTCTGAGTCGATTTTTCCTATTCTTCAAGATTCTATTCTTCCACTTATTATTCATTCCATGAAGGAGCCGAATGAAGAGAGACCTTCATGTTCGGTTCTGAATTAGAGATGTTGAGGCCATTCATTGACATCGACTATAACCCTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTAGTACTACTGGATCATCGGATGGATCAGCTCGATCCATCCCTTCAATCTTTCAAATAAATTTAGTTAATTCCAAATCCGATTCA-TCTCTTCCTTCCCAGCCATATCGTGAACATACAAAAGTATTTGTGTGTTCACGATACAGC Plenasium_vachellii TTGATTACCCTCCCGATAGAAAAACTTTATTCCTATTGGAGTTCAGATACTTCCCCATAAGCAGTATGGATGGGGAAAGCATCATTCCTGTTGTTCCGCCGTAGAGCCAAACTATTTGGGTGCTGGGATAACAAAGCGGAGTGATTTCGAGATCCTGGAGTCTCGGAATGATTGGTGAAAGATCTATGGATAGCGACCTAATCTATTTATTTCATCGTCACTAAATCTTTGATAATGAGATATCGAAGCTGAATAACCATGGAAGAAATAATCCTGGTTTACTTGGATTATCAAGCATTTCTTCTTTCAGCTCGGTGAGAAATATTTTCCTAAGGATTGGAGTCACTAGGAATAAAGAACGGAGTAACTGGAAGTAAATTTTCCTGAAACTTATCTATCAAAGAATTCATAGAATAAGAACAGTATTTTCTCTCTCAGAAGGATCATCTAAAAAGTATGCATCTCAACATATGAGGTGTTAGAAGGACTGACATAGATGTTATGGATACATTT----CATCCGATAGCGGCAATTTCGGATCATCGAATAGTAATCTATTTCGAATAGAATAGATATTTAGGAATACTCTGAGTCGAGTTTTCCTATTCTTCAAGATTCTCTTCTTCTACTTATTATCCATTCCATGAAGGAGCCGAATGAAGAGAGACCTTCATGTTCGGTTCTGAATTAGAGATGTTGAGACCATTCATTGACATCGACTATAACCCTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTAATACTACTGGATCATCGGATGGATCAGCTCAATCCATCCCTT-AATCTGTCGAATAAATTCAGTTAATTCCAAATCCGATACTCTCGCTTACTTCCCAGCTATATCGTGAACACACAAATACTTTTGT---------------- Claytosmunda_claytoniana_CL2 TTGATTTCCCTCCCGATTGAAAAACTTTATTCCTATTGGAGTTCAGATACTTCCCCATAAG----ATGGATGGGGAAAGCATCATTCCTGTTGTTCCGCCGTCGAGCCAAACTATTTGGGTGCTGGAATAACAAAGCGGAGTGATTTCGAGATCCCAGAGTCTCGGAATGATTGGTGGAAAATCTATGGATAGCGACCCAATCTATTTATTTCATCGTCACTAAATCTTTGATAATGAGATATCGAAGCTGAATAACCATAGAAGAAATAATCCTGGTTTACCTGGATTATCAAGCATTTCTTCTGTCAGCTCGGTGAGAAATATTTTCCTAAGGATTGGAGTCACTAGGAATAAAGAACGGAGTAACTGGAAGTAAAATTTACTGAAACTTATAAAT-AAAGAATTCTTAAAATAAGAAGAGTATTTTTTATCCCAGAAGGATCATCTAAAAAGTATGCATCTCAACATATGAGGTGTTAGAAGGACTGACATAGATGTTATGGATACATTT----CATCCGATAGCACCGATTTCGGATCATCAAATAGTAATATATTTCGAATAGAATAGATATTTAGGAATACTCTGAGTTGAGTTTTCCTATTCTTCAAGATTCTCTTCTTTTACTTATTATCCCTTCCATGAAGGAGCCGAATGAAGAGAGACCTTCATGTTCGGTTCTGAATTAGAGATGTTGAGACCATTCATTGACATCGACTATAACCCTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTAATACTACTGAATCATTGGATGGACCAGCTCGATCCATCCCTTCAATCTTTCAAAGAAATTTAGTTAATTCCAAATCCGATTCTATCTCTTCCTTCCCGGCTATATCGTGAACATACAAAAGTATTTGTTTGTTCACGATACAGC Plenasium_javanicum TTGATTACCCTCCCGATAGAAAAACTTTATTCCTATTGGAGTTCAGATACTTCCCCATAAGCAGTATGGATGGGGAAAGCATCATTCCTGTTGTTCCGCCGTAGAGCCAAACTATTTGGGTGCTGGGATAACAAAGCGGAGTGATTTCGAGATCCGGGAGTCTCGGAATGATTGGTGAAAGATCTATGGATAGCGACCTAATCTATTTATTTCATCGTCACTAAATCTTTGATAATGAGATATCGAAGCTGAATAACCATGGAAGAAATAATCCTGGTTTACTTGGATTATCAAGCATTTCTTCTTTCAGCTCGGTGAGAAATATTTTCCTAAGGATTGGAGTCACTAGGAATAAAGAACGGAGTAACTGGAAGTAAATTTTCCTGAAACTTATCTATCAAAGAATTCATAGAATAAGAACAGTATTTTCTCTCTCAGAAGGATCATCTAAAAAGTATGCATCTCAACATATGAGGTGTTAGAAGGACTGACATAGATGTTATGGATACATTT----CATCCGATAGCGGCAATTTCGGATCATCGAATAGTAATCTATTTCGAATAGAATAGATATTTAGGAATACTCTGAGTCGAGTTTTCCTATTCTTCAAGATTCTCTTCTTCTACTTATTATCCATTCCATGAAGGAGCCGAATGAAGAGAGACCTTCATGTTCGGTTCTGAATTAGAGATGTTGAGACCATTCATTGACATCGACTATAACCCTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTAATACTACTGGATCATCGGATGGATCAGCTCAATCCATCCCTT-AATCTGTCGAATAAATTCAGTTAATTCCAAATCCGATACTCTCGCTTACTTCCCAGCTATATCGTGAACACACAAAAGTATTTGTGTGTTCACGATATAGC Plenasium_banksiifolium TTGATTACCCTCCCGATAGAAAAACTTTATTCCTATTGGAGTTCAGATACTTCCCCATAAGCAGTATGGATGGGGAAAGCATCATTCCTGTTGTTCCGCCGTAGAGCCAAACTATTTGGGTGCTGGGATAACAAAGCGGAGTGATTTCGAGATCCGGGAGTCTCGGAATGATTGGTGAAAGATCTATGGATAGCGACCTAATCTATTTATTTCATCGTCACTAAATCTTTGATAATGAGATATCGAAGCTGAATAACCATGGAAGAAATAATCCTGGTTTACTTGGATTATCAAGCATTTCTTCTTTCAGCTCGGTGAGAAATATTTTCCTAAGGATTGGAGTCACTAGGAATAAAGAACGGAGTAACTGGAAGTAAATTTTCCTGAAACTTATCTATCAAAGAATTCATAGAATAAGAACAGTATTTTCTCTCTCAGAAGGATCATCTAAAAAGTATGCATCTCAACATATGAGGTGTTAGAAGGACTGACATAGATGTTATGGATACATTT----CATCCGATAGCGGCAATTTCGGATCATCGAATAGTAATCTATTTCGAATAGAATAGATATTTAGGAATACTCTGAGTCGAGTTTTCCTATTCTTCAAGATTCTCTTCTTCTACTTATTATCCATTCCATGAAGGAGCCGAATGAAGAGAGACCTTCATGTTCGGTTCTGAATTAGAGATGTTGAGACCATTCATTGACATCGACTATAACCCTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTAATACTACTGGATCATCGGATGGATCAGCTCAATCCATCCCTT-AATCTGTCGAATAAATTCAGTTAATTCCAAATCCGATACTCTCGCTTACTTCCCAGCTATATCGTGAACACACAAATACTTTTGTGTGTTCACGATATAGC Claytosmunda_claytoniana_CL1_Japan TTGATTTCCCTCCCGATTGAAAAACTTTATTCCTATTGGAGTTCAGATACTTCCCCATAAG----ATGGATGGGGAAAGCATCATTCCTGTTGTTCCGCCGTCGAGCCAAACTATTTGGGTGCTGGAATAACAAAGCGGAGTGATTTCGAGATCCCAGAGTCTCGGAATGATTGGTGGAAAATCTATGGATAGCGACCCAATCTATTTATTTCATCGTCACTAAATCTTTGATAATGAGATATCGAAGCTGAATAACCATAGAAGAAATAATCCTGGTTTACCTGGATTATCAAGCATTTCTTCTGTCAGCTCGGTGAGAAATATTTTCCTAAGGATTGGAGTCACTAGGAATAAAGAACGGAGTAACTGGAAGTAAAATTTACTGAAACTTATAAAT-AAAGAATTCTTAAAATAAGAAGAGTATTTTTTATCCCAGAAGGATCATCTAAAAAGTATGCATCTCAACATATGAGGTGTTAGAAGGACTGACATAGATGTTATGGATACATTT----CATCCGATAGCACCGATTTCGGATCATCGAATAGTAATATATTTCGAATAGAATAGATATTTAGGAATACTCTGAGTTGAGTTTTCCTATTCTTCAAGATTCTATTCTTTTACTTATTATCCATTCCATGAAGGAGCCGAATGAAGAGAGACCTTCATGTTCGGTTCTGAATTAGAGATGTTGAGACCATTCATTGACATCGACTATAACCCTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTAATACTACTGAATCATTGGATGGACCAGCTCGATCCATCCCTTCAATCTTTCAAAGAAATTTAGTTAATTCCAAATCCGATTCTATCTCTTCCTTCCCAGCTATATCGTGAACATACAAAAGTATTTGTTTGTTCACGATACAGC ; END; BEGIN MRBAYES; Lset nst = 6 rates = gamma; Prset statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); log start filename = trnGRnewforTree.log replace; mcmcp ngen = 10000000 printfreq = 1000 samplefreq = 100 nchains = 4 savebrlens = yes filename = trnGRnewforTree; mcmc; log stop; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 920; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 920; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 920; END; BEGIN TREES; Title trnGR; ID 0174bf0425ce18; LINK Taxa = Taxa; TRANSLATE [0] 1 Osmunda_japonica_J6, [1] 2 Osmunda_japonica_J1J2J3J4J5J7J8L1L2L3, [2] 3 Osmunda_regalis_R13, [3] 4 Osmunda_regalis_R14R16USA, [4] 5 Osmunda_regalis_R17R18, [5] 6 Osmunda_regalis_R5R6R7R8R9GNI, [6] 7 Osmunda_regalis_R10, [7] 8 Osmunda_regalis_R11R12, [8] 9 Osmunda_regalis_R1R2R3H2, [9] 10 Osmunda_hybrida_H1H4H5, [10] 11 Osmunda_regalis_R4, [11] 12 Osmunda_hybrida_H3, [12] 13 Plenasium_vachellii, [13] 14 Claytosmunda_claytoniana_CL2, [14] 15 Plenasium_javanicum, [15] 16 Plenasium_banksiifolium, [16] 17 Claytosmunda_claytoniana_CL1_Japan; TREE con_50_majrule = ((14:0.003729732,17:0.0007734277):0.010143825,((15:0.0005960343,(13:0.001419972,16:0.0005790424):0.003898162):0.02069615,((1:0.0008091262,2:0.001269529,(3:0.0005817796,4:0.0005857724,5:0.001413761):0.002914498):0.001821976,(8:0.003968701,(6:0.0005979874,7:0.001426199):0.001413009,(12:0.003124682,(9:0.0005871151,10:0.001421544,11:0.001415008):0.001452463):0.001282986):0.002052998):0.01657736):0.010143825); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1600933927151; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 625650984071890976; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5886324170415420721; mqVersion 361; checksumv 0 3 473254371 null getNumChars 920 numChars 920 getNumTaxa 17 numTaxa 17 short true bits 15 states 15 sumSquaresStatesOnly 364798.0 sumSquares 364798.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 296; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1586 1040; setLocation 464 251; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5886324170415420721 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -72; setLocation 464 251; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;