#NEXUS [written Thu Sep 24 17:17:01 JST 2020 by Mesquite version 3.61 (build 927) at tsutsumichie-no-iMac.local/202.220.64.189] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=15; TAXLABELS Osmunda_regalis_R10 Osmunda_japonica_J1bJ2J3J4J5J6J7J8 Osmunda_japonica_J1a Osmunda_lancea_L1L2L3 Osmunda_regalis_R13R14R15R16 Osmunda_regalis_R17R18 Osmunda_regalis_R5R6R7 Osmunda_regalis_R1R3R4 Osmunda_regalis_R2 Osmunda_regalis_R11R12 Plenasium_banksiifolium Osmunda_regalis_R8R9 Claytosmunda_claytoniana_CL1a Claytosmunda_claytoniana_CL1b Claytosmunda_claytoniana_CL2 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1185; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Osmunda_regalis_R10 TTTGCTGCTTGATTTTTTCTTCATCTTTTCTTTGTAGTGGTTTATTTACTGTTTGCAAGAAGACCTTAACTTGATTTGACAGAGAGTGATTGCTACAAAGATTGCTTACAAACAGTAATGAAGGGTCCTCTGCATATAACTCTTCGCCATCGACTAAATTGTAAGATAGTTCGAGCTTCAGATACTGAGGGACCAGGAGATGCTCAGAAAAAGAATCCTGAAGAATCCCATTTAGTCCTGAATGAAGTGTCCATTGATCGTGGCATGTCATCCTTCCTCACTTATTTGGAGTGCTACTGCGATAATTTCTTTGTAACTTGTGTTCAAGGAGATGGTTTAATTCTGTCAACAACATCAGGCAGTACTGCCTACTCATTGGCGGCAGGAGGCTCCATGGTCCATCCTCAGGTTTGCTAGTACAAATATGCCTGTCCCTCTTTCCACTGTTTAGGCAATGCTGGCTGCTTGTTACTATTTGGGCTGGATCCCTCAGCAGACATGAAAGTATCTATTGTTTCTATTGTTTCACTATGCATTATTTCCATTTGGTGTTGCAACAGGGCTCCTTAACATGGGATCTCCCAGCAGACATGAAAGTATCCATTGTTTCTATTGTTTTACTATGCATTATTTCCATTTGGTGTTGCAACAGGGCTCCTTAACATGGGATCTCCCAGGCTCTTTGAAAATCCATAGGTTTTATGCTACTGATAATGAACATACTGAAATAGTGTATTTCATCACCTT-GCACTGGGTTAGGATCATACAAAGTTTGTGTTTTGGTCATACCTGTTGTGCAATTACCTTCACAATTACAAGACAGCCTCTGCATGAGTATT--------GGGTGCTAATACCAAATTATCTGTAGGCCTCCAAATGCTATT-GGTCACTACCAAACTCTT---------TTGATCGACTTGTCTGAAAGATGCTGGTTGAGTCGGTAATAGGAGTTCACAACTAATGAATTTATTTGGTTTTACCTTGTTGGCGCATATGAGCCT--------------------CTGCCCATACAGATTGTTGAAGCAGAGTCCACACTTCCTTAGATGAGTTCATA-ATACATTTAGACTGTAGTGTTTAATCATGGTTTATTATTCTTGTAGGTTCCTGAATTTTCTTTTGCTTTTTCCTGTTTCACCTTGAAAAAGTTTAGG Osmunda_japonica_J1bJ2J3J4J5J6J7J8 TTTGCTGCTTGATTTTTTCATCATCTTTTCTTTGTAGTGGTTTATTTACTGTTTGCAAGAAGACCTTAACTTGATTTGACAGAGAGTGATTGCTACAAAGATTGCTTACAAACAGTAATGAAGGGTCCTCTGCATATAACTCTTCGCCATCGACTAAATTGTAAGATAGTTCGAGCTTCAGATACTGAGGGACCAGGAGATGCTCAGAAAAAGAATCCTGAAGAATCCCATTTAGTCCTGAATGAAGTGTCCATTGATCGTGGCATGTCATCCTTCCTCACTTATTTGGAGTGCTACTGCGATAATTTCTTTGTAACTTGTGTTCAAGGAGATGGTTTAATTCTGTCAACAACATCAGGCAGTACTGCCTACTCATTGGCAGCAGGAGGCTCCATGGTCCATCCTCAGGTTTGCTAGTACAAATATGCCCGTCCCTCTTTCCACTGTTTGGTCAATGCTGGCTGCTTGTTACTATTTGGGCTGGATCCCTCAGCAGACATGAAAGTATCCATTGTTTCTATTGTTTCACTATGGATTATTTCCGTTTGGCGTTGCAACAGGGCTCCTTAACATGGGATCTCCCAG--------------------------------------------------------------------------------------------GCTCTTTGAAAATCCATAGGTTTTATGCTACTGATAATGAACATACTGAAATAGTGTATTTCATCACCTT-GCACTGGGTTAGGATCATACAAAGTTTGTGTTTTGGTCATACCTGTTATGCAATTACCTTCACAATTACAAGACAGCCTCTGCATGAGTATC--------GGGTGCTAATACCAAATTATCTGTAGGCCTCCAAATGCTATTTGGTCACTACCAAACTCTT---------TTAATCGACTTGTCTGAAAGATGCTGGTTGAGTCTGTAATAGGAGTTCACAACTAATGAATTTATTAGGTTTTACCTTGTTGGCGCATATGAGCCT----------------------GCCCATACAGATTGTTGAAGCAGAGTCCACACTTCCTTAGATGAGTTCATA-ATACATTTAGACTGTAGTGTTTAATCATGGTATATTATTCTTGTAGGTTCCTGAATTTTCTTTTGCTTTTTCCTGTTTCACCTTGAAAAAGTTTAGG Osmunda_japonica_J1a TTTGCTGCTTGATTTTTTCATCATCTTTTCTTTGTAGTGGTTTATTTACTGTTTGCAAGAAGACCTTAACTTGATTTGACAGAGAGTGATTGCTACAAAGATTGCTTACAAACAGTAATGAAGGGTCCTCTGCATATAACTCTTCGCCATCGACTAAATTGTAAGATAGTTCGAGCTTCAGATACTGAGGGACCAGGAGATGCTCAGAAAAAGAATCCTGAAGAATCCCATTTAGTCCTGAATGAAGTGTCCATTGATCGTGGCATGTCATCCTTCCTCACTTATTTGGAGTGCTACTGCGATAATTTCTTTGTAACTTGTGTTCAAGGAGATGGTTTAATTCTGTCAACAACATCAGGCAGTACTGCCTACTCATTGGCGGCAGGAGGCTCCATGGTCCATCCTCAGGTTTGCTAGTACAAATATGCCTGTCCCTCTTTCCACTGTTTGGGCAATGCTGGCTGCTTGTTACTATTTGGGCTGGATCCCTCAGCAGACATGAAAGTATCCATTGTTTCTATTGTTTCACTATGGATTATTTCCATTTGGCGTTGCAACAGGGCTCCTTAACATGGGATCTCCCAG--------------------------------------------------------------------------------------------GCTCTTTGAAAATCCATAGGTTTTATGCTACTGATAATGAACATACTGAAATAGTGTATTTCATCACCTT-GCACTGGGTTAGGATTATACAAAGTTTGTGTTTTGGTCATACCTGTTATGCAATTACCTTCACAATTACAAGACAGCCTCTGCATGAGTATC--------GGGTGCTAATACCAAATTATCTGTAGGCCTCCAAATGCTATTTGGTCACTACCAAACTCTT---------TTAATCGACTTGTCTGAAAGATGCTGGTTGAGTCTGTAATAGGAGTTCACAACTAATGAATTTATTTGGTTTTACCTTGTTGGCGCATATGAGCCT----------------------GCCTATACAGATTGTTGAAGCAGAGTCCACACTTCCTTAGATGAGTTCATA-ATACATTTAGACTGTAGTGTTTAATCATGGTATATTATTCTTGTAGGTTCCTGAATTTTCTTTTGCTTTTTCCTGTTTCACCTTGAAAAAGTTTAGG Osmunda_lancea_L1L2L3 TTTGCTGCTTGATTTTTTCATCATCTTTTCTTTGTAGTGGTTTATTTACTGTTTGCAAGAAGACCTTAACTTGATTTGACAGAGAGTGATTGCTACAAAGATTGCTTACAAACAGTAATGAAGGGTCCTCTGCATATAACTCTTCGCCATCGACTAAATTGTAAGATAGTTCGAGCTTCAGATACTGAGGGACCAGGAGATGCTCAGAAAAAGAATCCTGAAGAATCCCATTTAGTCCTGAATGAAGTGTCCATTGATCGTGGCATGTCATCCTTCCTCACTTATTTGGAGTGCTACTGCGATAATTTCTTTGTAACTTGTGTTCAAGGAGATGGTTTAATTCTGTCAACAACATCAGGCAGTACTGCCTACTCATTGGCGGCAGGAGGCTCCATGGTCCATCCTCAGGTTTGCTAGTACAAATATGCCCGTCCCTCTTTCCACTGTTTGGGCAATGCTGGCTGCTTGTTACTATTTGGGCTGGATCCCTCAGCAGACATGAAAGTATCCATTGTTTCTATTGTTTCACTATGGATTATTTCCGTTTGGCGTTGCAACAGGGCTCCTTAACATGGGATCTCCCAG--------------------------------------------------------------------------------------------GCTCTTTGAAAATCCATAGGTTTTATGCTACTGATAATGAACATACTGAAATAGTGTATTTCATCACCTT-GCACTGGGTTAGGATCATACAAAGTTTGTGTTTTGGTCATACCTGTTATGCAATTACCTTCACAATTACAAGACAGCCTCTGCATGAGTATC--------GGGTGCTAATACCAAATTATCTGTAGGCCTCCAAATGCTATTTGGTCACTACCAAACTCTT---------TTAATCGACTTGTCTGAAAGATGCTGGTTGAGTCTGTAATAGGAGTTCACAACTAATGAATTTATTAGGTTTTACCTTGTTGGCGCATATGAGCCT----------------------GCCCATACAGATTGTTGAAGCAGAGTCCACACTTCCTTAGATGAGTTCATA-ATACATTTAGACTGTAGTGTTTAATCATGGTATATTATTCTTGTAGGTTCCTGAATTTTCTTTTGCTTTTTCCTGTTTCACCTTGAAAAAGTTTAGG Osmunda_regalis_R13R14R15R16 TTTGCTGCTTGATTTTTTCATCATCTTTTCTTTGTAGTGGTTTATTTACTGTTTGCAAGAAGACCTTAACTTGATTTGACAGAGAGTGATTGCTACAAAGATTGCTTACAAACAGTAATGAAGGGTCCTCTGCATATAACTCTTCGCCATCGACTAAATTGTAAGATAGTTCGAGCTTCAGATACTGAGGGACCAGGAGATGCTCAGAAAAAGAATCCTGAAGAATCCCATTTAGTCCTGAATGAAGTGTCCATTGATCGTGGCATGTCATCCTTCCTCACTTATTTGGAGTGCTACTGCGATAATTTCTTTGTAACTTGTGTTCAAGGAGATGGTTTAATTCTGTCAACAACATCAGGCAGTACTGCCTACTCATTGGCGGCAGGAGGCTCCATGGTCCATCCTCAGGTTTGCTAGTACAAATATGCCCGTCCCTCTTTCCACTGTTTGGGCAATGCTGGCTGCTTGTTACTATTTGGGCTGGATCCCTCAGCAGACATGAAAGTATCCATTGTTTCTATTGTTTCACTATGGATTATTTCCATTTGGCGTTGCAACAGGGCTCCTTAACATGGGATCTCCCAG--------------------------------------------------------------------------------------------GCTCTTTGAAAATCCATAGGTTTTATGCTACTGATAATGAACATACTGAAATAGTGTATTTCATCACCTT-GCACTGGGTTAGGATCATACAAAGTTTGTGTTTTGGTCATACCTGTTATGCAATTACCTTCACAATTACAAGACAGCCTCTGCATGAGTATC--------GGGTGCTAATACCAAATTATCTGTAGGCCTCCAAATGCTATTTGGTCACTACCAAACTCTT---------TTAATCGACTTGTCTGAAAGATGCTGGTTGAGTCTGTAATAGGAGTTCACAACTAATGAATTTATTTGGTTTTACCTTGTTGGCGCATATGAGCCT----------------------GCCCATACAGATTGTTGAAGCAGAGTCCACACTTCCTTAGACGAGTTCATA-ATACATTTAGACTGTAGTGTTTAATCATGGTATATTATTCTTGTAGGTTCCTGAATTTTCTTTTGCTTTTTCCTGTTTCACCTTGAAAAAGTTTAGG Osmunda_regalis_R17R18 TTTGCTGCTTGATTTTTTCATCGTCTTTTCTTTGTAGTGGTTTATTTACTGTTTGCAAGAAGACCTTAACTTGATTTGACAGAGAGTGATTGCTACAAAGATTGCTTACAAACAGTAATGAAGGGTCCTCTGCATATAACTCTTCGCCATCGACTAAATTGTAAGATAGTTCGAGCTTCAGATACTGAGGGACCAGGAGATGCTCAGAAAAAGAATCCTGAAGAATCCCATTTAGTCCTGAATGAAGTGTCCATTGATCGTGGCATGTCATCCTTCCTCACTTATTTGGAGTGCTACTGCGATAATTTCTTTGTAACTTGTGTTCAAGGAGATGGTTTAATTCTGTCAACAACATCAGGCAGTACTGCCTACTCATTGGCGGCAGGAGGCTCCATGGTCCATCCTCAGGTTTGCTAGTACAAATATGCCCGTCCCTCTTTCCACTGTTTGGGCAATGCTGGCTGCTTGTTACTATTTGGGCTGGATCCCTCAGCAGACATGAAAGTATCCATTGTTTCTATTGTTTCACTATGGATTATTTCCATTTGGCGTTGCAACAGGGCTCCTTAACATGGGATCTCCCAG--------------------------------------------------------------------------------------------GCTCTTTGAAAATCCATAGGTTTTATGCTACTGATAATGAACATACTGAAATAGTGTATTTCATCACCTT-GCACTGGGTTAGGATCATACAAAGTTTGTGTTTTGGTCATACCTGTTATGCAATTACCTTCACAATTACAAGAAAGCCTCTGCATGAGTATC--------GGGTGCTAATACCAAATTATCTGTAGGCCTCCAAATGCTATTTGGTCACTACCAAACTCTT---------TTAATCGACTTGTCTGAAAGATGCTGGTTGAGTCTGTAATAGGAGTTCACAACTAATGAATTTATTTGGTTTTACCTTGTTGGCGCATATGAGCCT----------------------GCCCATACAGATTGTTGAAGCAGAGTCCACACTTCCTTAGATGAGTTCATA-ATACATTTAGACTGTAGTGTTTAATCATGGTATATTATTCTTGTAGGTTCCTGAATTTTCTTTTGCTTTTTCCTGTTTCACCTTGAAAAAGTTTAGG Osmunda_regalis_R5R6R7 TTTGCTGCTTGATTTTTTCTTCATCTTTTCTTTATAGTGGTTTATTTACTGTTTGCAAGAAGACCTTAACTTGATTTGACAGAGAGTGATTGCTACAAAGATTGCTTACAAACAGTAATGAAGGGTCCTCTGCATATAACTCTTCGCCATCGACTAAATTGTAAGATAGTTCGAGCTTCAGATACTGAGGGACCAGGAGATGCTCAGAAAAAGAATCCTGAAGAATCCCATTTAGTCCTGAATGAAGTGTCCATTGATCGTGGCATGTCATCCTTCCTCACTTATTTGGAGTGCTACTGCGATAATTTCTTTGTAACTTGTGTTCAAGGAGATGGTTTAATTCTGTCAACAACATCAGGCAGTACTGCCTACTCATTGGCGGCAGGAGGCTCCATGGTCCATCCTCAGGTTTGCTAGTACAAATATGCCTGTCCCTCTTTCCACTGTTTAGGCAATGCTGGCTGCTTGTTACTATTTGGGCTGGATCCCTCAGCGGACATGAAAGTATCCATTGTTTCTATTGTTTCACTATGGATTATTTCCATTTGGTGTTGCAACAGGGCTCCTTAACATGGGATCTCCCAG--------------------------------------------------------------------------------------------GCTCTTTGAAAATCCATAGGTTTTATGCTACTGATAATGAACATACTGAAATAGTGTATTTCATCACCTT-GCACTGGGTTAGGATCATACAAAGTTTGTGTTTTGGTCATACCTGTTGTGCAATTACCTTCACAATTACAAGACAGCCTCTGCATGAGTATT--------GGGTGCTAATACCAAATTATCTGTAGGCCTCCAAATGCTATTTGGTCACTACCAAACTCTT---------TTAATCGACTTGTCTGAAAGATGCTGGTTGAGTCTGTAATAGGAGTTCACAACTAATGAATTTATTTGGTTTTACCTTGTTGGCGCATATGAGCCT--------------------CTGCCCATACAGATTGTTGAAGCAGAGTCCACACTTCCTTAGATGAGTTCATA-ATACATTTAGACTGTAGTGTTTAATCATGGTATATTATTCTTGTAGGTTCCTGAATTTTCTTTTGCTTTTTCCTGTTTCACCTTGAAAAAGTTTAGG Osmunda_regalis_R1R3R4 TTTGCTGCTTGATTTTTTCTTCATCTTTTCTTTGTAGTGGTTTATTTACTGTTTGCAAGAAGACCTTAACTTGATTTGACAGAGAGTGATTGCTACAAAGATTGCTTACAAACAGTAATGAAGGGTCCTCTGCATATAACTCTTCGCCATCGACTAAATTGTAAGATAGTTCGAGCTTCAGATACTGAGGGACCAGGAGATGCTCAGAAAAAGAATCCTGAAGAATCCCATTTAGTCCTGAATGAAGTGTCCATTGATCGTGGCATGTCATCCTTCCTCACTTATTTGGAGTGCTACTGCGATAATTTCTTTGTAACTTGTGTTCAAGGAGATGGTTTAATTCTGTCAACAACATCAGGCAGTACTGCCTACTCATTGGCGGCAGGAGGCTCCATGGTCCATCCTCAGGTTTGCTAGTACAAATATGCCCGTCCCTCTTTCCACTGTTTGGGCAATGCTGGCTGCTTGTTACTATTTGGGCTGGATCCCTCAGCAGACATGAAAGTATCCATTGTTTCTATTGTTTCACTATGGATTATTTCCATTTGGCGTTGCAACAGGGCTCCTTAACATGGGATCTCCCAG--------------------------------------------------------------------------------------------GCTCTTTGAAAATCCATAGGTTTTATGCTACTGATAATGAACATACTGAAATAGTGTATTTCATCACCTT-GCACTGGGTTAGGATCATACAAAGTTTGTGTTTTGGTCATACCTGTTATGCAATTACCTTCACAATTACAAGACAGCCTCTGCATGAGTATC--------GGGTGCTAATACCAAATTATCTGTAGGCCTCCAAATGCTATTTGGTCACTACCAAACTCTT---------TTAATCAACTCGTCTGAAAGATGCTGGTTGAGTCTGTAATAGGAGTTCACAACTAATGAATTTATTTGGTTTTACCTTGTTGGTGCATATGAGCCT----------------------GCCCATACAGATTGTTGAAGCAGAGTCCACACTTCCTTAGATGAGTTCATA-ATACATTTAGACTGTAGTGTTTAATCATGGTATATTATTCTTGTAGGTTCCTGAATTTTCTTTTGCTTTTTCCTGTTTCACCTTGAAAAAGTTTAGG Osmunda_regalis_R2 TTTGCTACTTGATTTTTTCTTCATCTTTTCTTTGTAGTGGTTTATTTACTGTTTGCAAGAAGACCTTAACTTGATTTGACAGAGAGTGATTGCTACAAAGATTGCTTACAAACAGTAATGAAGGGTCCTCTGCATATAACTCTTCGCCATCGACTAAATTGTAAGATAGTTCGAGCTTCAGATACTGAGGGACCAGGAGATGCTCAGAAAAAGAATCCTGAAGAATCCCATTTAGTCCTGAATGAAGTGTCCATTGATCGTGGCATGTCATCCTTCCTCACTTATTTGGAGTGCTACTGCGATAATTTCTTTGTAACTTGTGTTCAAGGAGATGGTTTAATTCTGTCAACAACATCAGGCAGTACTGCCTACTCATTGGCGGCAGGAGGCTCCATGGTCCATCCTCAGGTTTGCTAGTACAAATATGCCCGTCCCTCTTTCCACTGTTTGGGCAATGCTGGCTGCTTGTTACTATTTGGGCTGGATCCCTCAGCAGACATGAAAGTATCCATTGTTTCTATTGTTTCACTATGGATTATTTCCATTTGGCGTTGCAACAGGGCTCCTTAACATGGGATCTCCCAG--------------------------------------------------------------------------------------------GCTCTTTGAAAATCCATAGGTTTTATGCTACTGATAATGAACATACTGAAATAGTGTATTTCATCACCTT-GCACTGGGTTAGGATCATACAAAGTTTGTGTTTTGGTCATACCTGTTATGCAATTACCTTCACAATTACAAGACAGCCTCTGCATGAGTATC--------GGGTGCTAATACCAAATTATCTGTAGGCCTCCAAATGCTATTTGGTCACTACCAAACTCTT---------TTAATCAACTCGTCTGAAAGATGCTGGTTGAGTCTGTAATAGGAGTTCACAACTAATGAATTTATTTGGTTTTACCTTGTTGGTGCATATGAGCCT----------------------GCCCATACAGATTGTTGAAGCAGAGTCCACACTTCCTTAGATGAGTTCATA-ATACATTTAGACTGTAGTGTTTAATCATGGTATATTATTCTTGTAGGTTCCTGAATTTTCTTTTGCTTTTTCCTGTTTCACCTTGAAAAAGTTTAGG Osmunda_regalis_R11R12 TTTGCTGCTTGATTTTTTCTTCATCTTTTCTTTGTAGTGGTTTATTTACTGTTTGCAAGAAGACCTTAACTTGATTTGACAGAGAGTGATTGCTACAAAGATTGCTTACAAACAGTAATGAAGGGTCCTCTGCATATAACTCTTCGCCATCGACTAAATTGTAAGATAGTTCGAGCTTCAGATACTGAGGGACCAGGAGATGCTCAGAAAAAGAATCCTGAAGAATCCCATTTAGTCCTGAATGAAGTGTCCATTGATCGTGGCATGTCATCCTTCCTCACTTATTTGGAGTGCTACTGCGATAATTTCTTTGTAACTTGTGTTCAAGGAGATGGTTTAATTCTGTCAACAACATCAGGCAGTACTGCCTACTCATTGGCGGCAGGAGGCTCCATGGTCCATCCTCAGGTTTGCTAGTACAAATATGCCCGTCCCTCTTTCCACTGTTTAGGCAATGCTGGCTGCTTGTTACTATTTGGGCTGGATCCCTCAGCAGACATGAAAGTATCCATTGTTTCTATTGTTTCACTATGGATTATTTCCATTTGGCGTTGCAACAGGGATCCTTAACATGGGATCTCCCAG--------------------------------------------------------------------------------------------GCTCTTTGAAAATCCATAGGTTTTATGCTACTGATAATGAACATACTGAAATAGTGTATTTCATCACCTT-GCACTGGGTTAGGATCATACAAAGTTTGTGTTTTGGTCATACCTGTTATGCAATTACCTTCACAATTACAAGACAGCCTCTGCATGAGTATC--------GGGTGCTAATACCAAATTATCTGTAGGCCTCCAAATGCTATTTGGTCACTACCAAACTCTT---------TTAATCGACTTGTCTGAAAGATGCTGGTTGAGTCTGCAATAGGAGTTCACAACTAATGAATTTATTTGGTTTTACCTTGTTGGCGCATATGAGCCT----------------------GCCCATACAGATTGTTGAAGCAGAGTCCACACTTCCTTAGATGAGTTCATA-ATACATTTAGACTGTAGTGTTTAATCATGGTATATTATTCTTGTAGGTTCCTGAATTTTCTTTTGCTTTTTCCTGTTTCACCTTGAAAAAGTCTAGG Plenasium_banksiifolium ----------------------ACCTTTTCTTTGTAGTGGTTTATTTACGGTTTGCAAGAAGACCTTAACTTGATTTAACAGAGAGTGATTGCTACAGAGATTGCTTACAAACAGTAATGAAGGGTCCTCTGCATATAACTCTTCGCCATCGACTAAATTGTAAGATAGTTCGAGCTTCAGATACTGAGGGACCAGGAGATGCTCAGAAAATGCTTCCTGAAGAATCCCATTTAGTCCTGAATGAAGTGTCCATTGATCGTGGCATGTCATCCTTCCTCACTTATTTGGAGTGCTACTGCGATAATTTCTTTGTAACCTGTGTTCAAGGAGATGGTTTAATTCTGTCAACAACATCAGGCAGTACTGCCTACTCATTGGCGGCAGGAGGCTCCATGGTCCATCCTCAGGTTTGCTAGTAAAAATATGCCCGTCCCTCATTCCACTGTTTAGGCTATGCTGGCTGCTGTTTACTATTTGGGCTGGATCCCTTAGCAGACATGAAAGTATCGATTGTTTCTATTGTTTCACCGTGGATTATTTCCATTCAGTGTTGCAACAGGGCTCCTTAACATGGGATCTCCCAG--------------------------------------------------------------------------------------------GCTCTTTGAAAATCGATAGGTTTTATGCTACTGATAATGAACATACTAAAATAGTACATTTCATCACCTTTGCACTGGGTTAGGATCATACAAAGTTTGTGTTTTGGTCATATGTATTATGCAATTACCTTTACAATTACAAGATAGCCTCTGCATGAGTATCACAGATCAGGGTGCTAATACCAAATTATCTGTAGGCCTCCAAATGCTATTTGGTCTCTACTAAACTCTTTATGATTTCTTAATCCACTTGCCTCATGGATGCTGGTTGAGTCTGTAATAGGAGCTCACAACTAATGAGTTTATTTGGTTTTACCTTGGTGGCACATATGATCAT----------------GTGCATACCCATACAGATAGTTGAAGTTGAGTCTACACTTCCTTAGATCAGTTCATATATACATTTAGACTGTAGTGTTCAATCACGGTACATTATTCTTGTAGGTTCCTGAATTTTCTTTTGCTTTTTCCTGCTTCACCTTGAAAAAGTTTAGG Osmunda_regalis_R8R9 TTTGCTGCTTGATTTTTTCTTCATCTTTTCTTTGTAGTGGTTTATTTACTGTTTGCAAGAAGACCTTAACTTGATTTGACAGAGAGTGATTGCTACAAAGATTGCTTACAAACAGTAATGAAGGGTCCTCTGCATATAACTCTTCGCCATCGACTAAATTGTAAGATAGTTCGAGCTTCAGATACTGAGGGACCAGGAGATGCTCAGAAAAAGAATCCTGAAGAATCCCATTTAGTCCTGAATGAAGTGTCCATTGATCGTGGCATGTCATCCTTCCTCACTTATTTGGAGTGCTACTGCGATAATTTCTTTGTAACTTGTGTTCAAGGAGATGGTTTAATTCTGTCAACAACATCAGGCAGTACTGCCTACTCATTGGCGGCAGGAGGCTCCATGGTCCATCCTCAGGTTTGCTAGTACAAATATGCCCGTCCCTCTTTCCACTGTTTAGGCAATGCTGGCTGCTTGTTACTATTTGGGCTGGATCCCTCAGCAGACATGAAAGTATCCATTGTTTCTATTGTTTCACTATGGATTATTTCCATTTGGCGTTGCAACAGGGCTCCTTAACATGGGATCTCCCAG--------------------------------------------------------------------------------------------GCTCTTTGAAAATCCATAGGTTTTATGCTACTGATAATGAACATACTGAAATAGTGTATTTCATCACCTT-GCACTGGGTTAGGATCATACAAAGTTTGTGTTTTGGTCATACCTGTTGTGCAATTACCTTCACAATTACAAGACAGCCTCTGCATGAGTATT--------GGGTGCTAATACCAAATTATCTGTAGGCCTCCAAATGCTATTTGGTCACTACCAAACTCTT---------TTAATCGACTTGTCTGAAAGATGCTGGTTGAGTCTGTAATAGGAGTTCACAACTAATGAATTTATTTGGTTTTACCTTGTTGGCGCATATGAGCCT--------------------CTGCCCATACAGATTGTTGAAGCAGAGTCCACACTTCCTTAGATGAGTTCATA-ATACATTTAGACTGTAGTGTTTAATCATGGTATATTATTCTTGTAGGTTCCTGAAGTTTCTTTTGCTTTTTCCTGTTTCACCTTGAAAAAGTTTAGG Claytosmunda_claytoniana_CL1a -----------------TCTTCACCTTTTCTTTGTAGTGGTTTATTTACAGTTTGCAAGAAGACCTTAACTTGATTCAACAGAGAGTGATTGCTACAAAGATTGCTTACAAACAGTACTGAAGGGTCCTCTGCATATAACTCTTCGCCATCGACTAAATTGTAAGATAGTTCGAGCTTCAGATACTGAGGGACCAGGAGATGCTCAGAAAAAGCTTCCCGAAGAATCCCATTTAGTCCTGAATGAAGTGTCCATTGATCGTGGCATGTCATCCTTCCTCACTTATTTGGAGTGCTACTGTGATAATTTCTTTGTAACCTGTGTTCAAGGAGATGGTTTAATTCTGTCAACAACATCAGGCAGTACTGCGTACTCATTGGCTGCAGGAGGCTCCATGGTCCATCCTCAGGTTTGCTAGTACAAATATGCATGTCCCTCTTTCCACTGTTTAGGATATGCTGGCTGCTTGTTACTATTTGGGCTGGATCCCTCAGCAGACATGAAACTTTCCATTGTTTCTATTGTTTCACTGTGGATGATTTCCATTTGGTGTTGCATGAGGGCTCCTTAACATGGGATCTCCCAG--------------------------------------------------------------------------------------------GCCCATTGAAAATCCATAGGTTTTATGCTACTGATAATGAACATACTGAAATAGGGCATTTCATCACGTT-----------AGGATCATACAAAGTTTGTGTTTCGGTCATACCTGTTATGCAATTACCTTCACAATTACAAGACAGCCTCTGCATGAGTATCACAGATgAGGcTGCTAATACCAAATTATCTGTAGGCCTCCAAATGCTATTTGGTCACTACTAAACTCTTCATGATTTCTTAATCCGCTTGTCTGAAGGATTCTGGTTGAGTCTGTAATAGGAGTTCTCCACTAATGAATTTATTTGGTTTTACCTTGGTGGCACATATGAGCATGTGCTGTTAAGTTCATGCGCATACCCATACAGATTGTTGAAGCTGAGTCCACACTTCCTTAGATCAGTTCATATATACATTTAGACTGTAGTGTTCAATCATGGTATATTATTCTTGTAGGTTCCTGAATTTTCTTT-GCTTTTTCCCGTTTCACCTTGAAAAAAATTAGG Claytosmunda_claytoniana_CL1b -----------------TCTTCACCTTTTCTTTGTAGTGGTTTATTTACAGTTTGCAAGAAGACCTTAACTTGATTCAACAGAGAGTGATTGCTACAAAGATTGCTTACAAACAGTACTGAAGGGTCCTCTGCATATAACTCTTCGCCATCGACTAAATTGTAAGATAGTTCGAGCTTCAGATACTGAGGGACCAGGAGATGCTCAGAAAAAGCTTCCCGAAGAATCCCATTTAGTCCTGAATGAAGTGTCCATTGATCGTGGCATGTCATCCTTCCTCACTTATTTGGAGTGCTACTGTGATAATTTCTTTGTAACCTGTGTTCAAGGAGATGGTTTAATTCTGTCAACAACATCAGGCAGTACTGCGTACTCATTGGCTGCAGGAGGCTCCATGGTCCATCCTCAGGTTTGCTAGTACAAATATGCATGTCCCTCTTTCCACTGTTTAGGATATGCTGGCTGCTTGTTACTATTTGGGCTGGATCCCTCAGCAGACATGAAACTTTCCATTGTTTCTATTGTTTCACTGTGGATGATTTCCATTTGGTGTTGCATGAGGGCTCCTTAACATGGGATCTCCCAG--------------------------------------------------------------------------------------------GCCCATTGAAAATCCATAGGTTTTATGCTACTGATAATGAACATACTGAAATAGGGCATTTCATCACGTT-----------AGGATCATACAAAGTTTGTGTTTCGGTCATACCTGTTATGCAATTACCTTCACAATTACAAGACAGCCTCTGCATGAGTATCACAGATcAGGgTGCTAATACCAAATTATCTGTAGGCCTCCAAATGCTATTTGGTCACTACTAAACTCTTCATGATTTCTTAATCCGCTTGTCTGAAGGATTCTGGTTGAGTCTGTAATAGGAGTTCTCCACTAATGAATTTATTTGGTTTTACCTTGGTGGCACATATGAGCATGTGCTGTTAAGTTCATGCGCATACCCATACAGATTGTTGAAGCTGAGTCCACACTTCCTTAGATCAGTTCATATATACATTTAGACTGTAGTGTTCAATCATGGTATATTATTCTTGTAGGTTCCTGAATTTTCTTT-GCTTTTTCCCGTTTCACCTTGAAAAAAATTAGG Claytosmunda_claytoniana_CL2 TTTGCTGCTTGCTTTTTTCTTCACCTTTTCTTTGTAGTGGTTTATTTACAGTTTGCAAGAAGACCTTAACTTGATTCAACAGAGAGTGATTGCTACAAAGATTGCTTACAAACAGTACTGAAGGGTCCTCTGCATATAACTCTTCGCCATCGACTAAATTGTAAGATAGTTCGAGCTTCAGATACTGAGGGACCAGGAGATGCTCAGAAAAAGCTTCCCGAAGAATCCCATTTAGTCCTGAATGAAGTGTCCATTGATCGTGGCATGTCATCCTTCCTCACTTATTTGGAGTGCTACTGTGATAATTTCTTTGTAACCTGTGTTCAAGGAGATGGTTTAATTCTGTCAACAACATCAGGCAGTACTGCGTACTCATTGGCTGCGGGAGGCTCCATGGTCCATCCTCAGGTTTGCTAGTACAAATATGCACGTCCCTCTTTCCACTGTTTAGGCTATGATGGCTGCTTGTTACTATTTGGGCTGGATCCCTCAGCAGACATGAAACTTTCCATTGTTTCTATTGTTTCACTGTGGATTATTTCCATTTGGTGTTGCATGAGGGCTCCTTAACATGGGATCTCCCAG--------------------------------------------------------------------------------------------GCTCTTTGAAAATCCATAGGTTTTATGCTACTGATAATGAAAATACTGAAATAGGGCATTTTATCACGTT-----------AGGATCATACAAAGTTTGTGTTTCGGTCATACCTGTTATGCAATTACCTTCACAATTACAAGACAGCCTCTGCATGAGTATCACAGATCAGGGTGCTAATACCAAATTATCTGTAGGGCTCCAAATGCTATTTGGTCACTACTAAACTCTTCATGATTTCTTAATCCGCTTGTCTGAAGGATTCTGGTTGAGTCTGTAATAGGAGTTCTCCACTAATGAATTTATTTGGTTTTACCTTGGTGGCACATATGAGCATGTGCTGTAAAGTTCATGCGCATACCCATACAGATTGTTGAAGCTGAGTCCACACTTCCTTAGATCAGTTCATATATACATTTAGACTGTAGTGTTCAATCATGGTATATTATTCTTGTAGGTTCCTGAATTTTCTTT-GCTTTTTCCCGTTTCACCTTGAAAAAAATTAGG ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 1185; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 1185; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 1185; END; BEGIN TREES; Title L153tree; ID 0174bf2dd06815; LINK Taxa = Taxa; TRANSLATE [0] 1 Osmunda_regalis_R10, [1] 2 Osmunda_japonica_J1bJ2J3J4J5J6J7J8, [2] 3 Osmunda_japonica_J1a, [3] 4 Osmunda_lancea_L1L2L3, [4] 5 Osmunda_regalis_R13R14R15R16, [5] 6 Osmunda_regalis_R17R18, [6] 7 Osmunda_regalis_R5R6R7, [7] 8 Osmunda_regalis_R1R3R4, [8] 9 Osmunda_regalis_R2, [9] 10 Osmunda_regalis_R11R12, [10] 11 Plenasium_banksiifolium, [11] 12 Osmunda_regalis_R8R9, [12] 13 Claytosmunda_claytoniana_CL1a, [13] 14 Claytosmunda_claytoniana_CL1b, [14] 15 Claytosmunda_claytoniana_CL2; TREE con_50_majrule = ((15:0.006138,(13:0.002807,14:0.000943)1.00:0.006068)1.00:0.011477,(11:0.033976,(10:0.003785,(12:0.001899,(1:0.005714,7:0.002845):0.00282)1.00:0.002941,((8:0.000946,9:0.001894)1.00:0.003803,(3:0.003783,5:0.001885,6:0.002832,(2:0.002839,4:0.000948)1.00:0.002831)0.98:0.001902)0.97:0.001894)1.00:0.021302)1.00:0.011477)[% ] [% ] [% setBetweenBits = selected ]; TREE con_50_majrule = (1:0.005714,7:0.002845,(((((2:0.002839,4:0.000948):0.002831,3:0.003783,5:0.001885,6:0.002832):0.001902,(8:0.000946,9:0.001894):0.003803):0.001894,10:0.003785,(11:0.033976,((13:0.002807,14:0.000943):0.006068,15:0.006138):0.022954):0.021302):0.002941,12:0.001899):0.00282); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1600935421574; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4311434851637738402; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4493414479880012293; mqVersion 361; checksumv 0 3 3052019793 null getNumChars 1185 numChars 1185 getNumTaxa 15 numTaxa 15 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 422841.0 sumSquares -9.223372036854485E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 296; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1418 1017; setLocation 962 156; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #4493414479880012293 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -72; setLocation 962 156; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;