#NEXUS [written Thu Sep 24 17:21:59 JST 2020 by Mesquite version 3.61 (build 927) at tsutsumichie-no-iMac.local/202.220.64.189] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=16; TAXLABELS Osmunda_regalis_R10 Osmunda_japonica_J1J2J3J4J5J6J7J8 Osmunda_regalis_R14 Osmunda_lancea_L1L2L3 Osmunda_regalis_R5b Osmunda_regalis_R5aR6 Osmunda_regalis_R7 Osmunda_regalis_R13aR15 Osmunda_regalis_R13bR16R17R18 Osmunda_regalis_R1R2R4 Osmunda_regalis_R3 Osmunda_regalis_R11R12 Plenasium_banksiifolium Osmunda_regalis_R8R9 Claytosmunda_claytoniana__CL1b Claytosmunda_claytoniana_CL1aCL2 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=692; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Osmunda_regalis_R10 CCATTCTAAGATCAGAAAGCAAGAAAGATTATTCCTAAACCTCGTTATTCC-AAACAATCCCATCCTCCCCTCACCTCTTTAAT-AATTAGCAAATAAGCCAAATAATTATTCCCTGGCTTTGTGTGGAAGACTAACTTGTTTCAAGGCTTTCATACTCCCCC-TCTGTGCTTTAGCCA--GACTTGTACTTGATTGGTTCATTGAAAGCTTTTAGCCACGCAGACTCACACACTACAACAGGCATGGGAGCATGCCTCCATGTGGTTATGTCTTCACCCAAACAGCCAGGTCTTCTATGGTGTATTGGTTGTTCTACAGGTATGGAATTATTGT--------GCTAACTAGGTAGGATTTGGCTTTTCAGCTGCGAGGCTCAGAGTTGCAGCTACAGAGAAGGCAGAGGCTGAGAAGATCCTACAAGTGAAGCGGGCAGAGGCTGAGGCAGAATCAAAGTATCTATCTGGACTGGGGATTGCTCGGCAGAGGCAGGCCATAGTGGACGGGTTAAGAGAGAGCGTGCTTGGTTTCTCACACAATGTTCCAGGTACATCAGCAAGGGATGTAATGGACATGGTACTACTCACTCAGTATTTTGATACAATGAAAGATATTGGAGCGCATTCCAAATCTTCAGCTGTCTTTATTCCTCATGGACCAGGAGCGGTTGGTGATGTAGCTCAACAGA Osmunda_japonica_J1J2J3J4J5J6J7J8 CCATTCTAAGATCAGAAAGCAAGAAAGATTATTCCTAAACCTCGTTATTCC-AAACAATCCCATCCTCCCCTCACCTCTTTAAT-AATTAGCAAATAAGCCAAATAATTATTCCCTGGCTTTGTGTGGAAGACTAACTTGTTTCAAGGCTTTCATACTCCCCC-TCTGTGCTTTAGCCA--GACTCGTACTTGATTGGTACATTGAAAGCTTTTAGCCACACAGACTCACACACTACAACAGGCATGGGAGCATGCCTCCATGTGGTTATGTCTTCACCCAAACAGCCAGGTCTTCTATGGTGTATTGGTTGTTCTACAGGCATGGAATTATTGT--------GCTAACTAGGTAGGATTTGGCTTTTCAGCTGCAAGGCTCAGAGTTGCAGCTACAGAGAAGGCAGAGGCTGAGAAGATCCTACAAGTGAAGCGCGCAGAGGCTGAGGCAGAATCAAAGTATCTATCTGGACTGGGGATTGCTCGGCAGAGGCAGGCCATAGTGGATGGGTTAAGAGAGAGCGTGCTTGGTTTCTCACACAATGTTCCAGGTACATCAGCAAGGGATGTAATGGACATGGTACTACTTACTCAGTATTTTGATACAATGAAAGATATTGGAGCGCATTCCAAATCTTCAGCTGTCTTTATTCCTCATGGACCAGGAGCGGTTGGTGATGTAGCTCAACAGA Osmunda_regalis_R14 ----------------AAGCAAAAAAGATTATTCCTAAACCTCGTTATTCC-AAACAATCCCATCCTCCCCTCACCTCTTTAAT-AATTAGCAAATAAGCCAAATAATTATTCCCTGGCTTTGTGTGGAAGACTAACTTGTTTCAAGGCTTTCATACGCCCCC-TCTGTGCTTTAGCCA--GACTCGTACTTGATTGGTACATTGAAAGCTTTTAGCCACGCAGACTCACACACTACAACAGGCATGGGAGCATGCCTCCATGTGGTTATGTCTTCACCCAAACAGCCAGGTCTTCTATGGTGTATTGGTTGTTCTACAGGCATGGAATTATTGT--------GCTAACTAGGTAGGATTTGGCTTTTCAGCTGCGAGGCTCAGAGTTGCAGCTACAGAGAAGGCAGAGGCTGAGAAGATCCTACAAGTGAAGCGGGCAGAGGCTGAGGCAGAATCAAAGTATCTATCTGGACTGGGGATTGCTCGGCAGAGGCAGGCCATAGTGGATGGGTTAAGAGAGAGCGTGCTTGGTTTCTCACACAATGTTCCAGGTACATCAGCAAGGGATGTAATGGACATGGTACTACTCACTCAGTATTTTGATACAATGAAAGATATTGGAGCGCATTCCAAATCTTCAGCTGTCTTTATTCCTCATGGACCAGGAGCGGTTGGTGATGTAGCTCAACAGA Osmunda_lancea_L1L2L3 CCATTCTAAGATCAGAAAGCAAGAAAGATTATTCCTAAACCTCGTTATTCCCAAACAATCTCATCCCCCCCTCACTTCTTTAAT-AATTAGCAAAGAAGCCAAAGAATTATTCCCTGGCTTTGTGTGGAAGACTAAGTTGTTTCAAGGCTTTCGTACTCCGCC-TCTGTGCTTTAGCCA--GACTCGTACTTGATTGGTACATTGAAAGCTTTTAGCCACACAGACTCACACACTACAACAGGCATGGGAGCATGCCTCCATGTGGTTATGTTTCCACCCAAACAGCCAGGTCTTCTATGGTGTATTGGTTGTTCTACAGGCATGGAATTATTAT--------GCTAACTAGGTAGGATTTGGCTTTTCAGCTGCGAGGCTCAGAGTTGCAGCTACAGAGAAGGCAGAGGCTGAGAAGATCCTACAAGTGAAGCGGGCAGAGGCTGAGGCAGAATCAAAGTATCTATCTGGACTGGGGATTGCTCGGCAGAGGCAGGCCATAGTGGATGGGTTAAGAGAGAGTGTGCTTGGTTTCTCACACAATGTTCCAGGTACATCAGCAAGGGATGTAATGGACATGGTACTACTCACTCAGTATTTTGATACAATGAAAGATATTGGAGCGCATTCCAAATCTTCAGCTGTCTTTATTCCTCATGGACCCGGAGCAGTTGGTGATGTAGCTCAACAGA Osmunda_regalis_R5b CCATTCTAAGATCA-----------AGATTATTCCTAAACCTCGTTATTCCCAAACAATCCCATTCCCCCCTCcCCTCTTTAAT-AATTAGTGAATAAGCCAAAGAATTATTCCCCGGCTTTGTGTGGAAGACTAACTTGTTTCAAGGCTTTCATACTCCCCC-TCTGTGCTTTAGCCA--GACTCGTACTTGATTGGTACATTGAAAGCTTTTAGCCACGCAGACTCACACACTACAACAGGCATGGGAGCATGCCTCCATGTGGTTATGTCTCCACCCAAACAGCCAGGTCTTCTATGGTGTATTGGTTGTTCTACAGGCATGAAATTATTGT--------GCTAACTAGGTAGGATTTGGCTTTTCAGCTGCGAGGCTCAGAGTTGCAGCTACAGAGAAGGCAGAGGCTGAGAAGATCCTACAAGTGAAGCGGGCAGAGGCTGAGGCAGAATCAAAGTATCTATCTGGACTGGGGATTGCTCGGCAGAGGCAGGCCATAGTGGATGGGTTAAGAGAGAGCGTGCTTGGTTTCTCACACAATGTTCCAGGTACATCAGCAAGGGATGTGATGGACATGGTACTACTCACTCAGTATTTTGATACAATGAAAGATATTGGAGCGCATTCCAAATCTTCAGCTGTCTTTATTCCTCATGGACCCGGAGCGGTTGGTGATGTAGCTCAACAGA Osmunda_regalis_R5aR6 CCATTCTAAGATCA-----------AGATTATTCCTAAACCTCGTTATTCCCAAACAATCCCATTCCCCCCTCaCCTCTTTAAT-AATTAGTGAATAAGCCAAAGAATTATTCCCCGGCTTTGTGTGGAAGACTAACTTGTTTCAAGGCTTTCATACTCCCCC-TCTGTGCTTTAGCCA--GACTCGTACTTGATTGGTACATTGAAAGCTTTTAGCCACGCAGACTCACACACTACAACAGGCATGGGAGCATGCCTCCATGTGGTTATGTCTCCACCCAAACAGCCAGGTCTTCTATGGTGTATTGGTTGTTCTACAGGCATGAAATTATTGT--------GCTAACTAGGTAGGATTTGGCTTTTCAGCTGCGAGGCTCAGAGTTGCAGCTACAGAGAAGGCAGAGGCTGAGAAGATCCTACAAGTGAAGCGGGCAGAGGCTGAGGCAGAATCAAAGTATCTATCTGGACTGGGGATTGCTCGGCAGAGGCAGGCCATAGTGGATGGGTTAAGAGAGAGCGTGCTTGGTTTCTCACACAATGTTCCAGGTACATCAGCAAGGGATGTGATGGACATGGTACTACTCACTCAGTATTTTGATACAATGAAAGATATTGGAGCGCATTCCAAATCTTCAGCTGTCTTTATTCCTCATGGACCCGGAGCGGTTGGTGATGTAGCTCAACAGA Osmunda_regalis_R7 CCATTCTAAGATCA-----------AGATTATTCCTAAACCTCGTTATTCCCAAACAATCCCATTCCCCCCTCCCCTCTTTAAT-AATTAGCGAATAAGCCAAAGAATTATTCCCCGGCTTTGTGTGGAAGACTAACTTGTTTCAAGGCTTTCATACTCCCCC-TCTGTGCTTTAGCCA--GACTCGTACTTGATTGGTACATTGAAAGCTTTTAGCCACGCAGACTCACACACTACAACAGGCATGGGAGCATGCCTCCATGTGGTTATGTCTCCACCCAAACAGCCAGGTCTTCTATGGTGTATTGGTTGTTCTACAGGCATGAAATTATTGT--------GCTAACTAGGTAGGATTTGGCTTTTCAGCTGCGAGGCTCAGAGTTGCAGCTACAGAGAAGGCAGAGGCTGAGAAGATCCTACAAGTGAAGCGGGCAGAGGCTGAGGCAGAATCAAAGTATCTATCTGGACTGGGGATTGCTCGGCAGAGGCAGGCCATAGTGGATGGGTTAAGAGAGAGCGTGCTTGGTTTCTCACACAATGTTCCAGGTACATCAGCAAGGGATGTGATGGACATGGTACTACTCACTCAGTATTTTGATACAATGAAAGATATTGGAGCGCATTCCAAATCTTCAGCTGTCTTTATTCCTCATGGACCCGGAGCGGTTGGTGATGTAGCTCAACAGA Osmunda_regalis_R13aR15 CCATTCTAAGATCAGAAAGCAAGAAAGATTATTCCTAAACCTCGTTATTCC-AAACAATCCCATCCTCCCCTCACCTCTTTAAT-AATTAGCAAATAAGCCAAATAATTATTCCCTGGCTTTGTGTGGAAGACTAACTTGTTTCAAGGCTTTCATACTCCCCC-TCTGTGCTTTAGCCA--GACTTGTACTTGATTGGTTCATTGAAAGCTTTTAGCCATGCAGACTCACACACTACAACAGGCATGGGAGCATGCCTCCATGTGGTTATGTCTTCACCCAAACAGCCAGGTCTTCTATGGTGTATTGGTTGTTCTACAGGCATGGAATTATTGT--------GCTAACTAGGTAGGATTTGGCTTTTCAGCTGCGAGGCTCAGAGTTGCAGCTACAGAGAAGGCAGAGGCTGAGAAGATCCTACAAGTGAAGCGGGCAGAGGCTGAGGCAGAATCAAAGTATCTATCTGGACTGGGGATTGCTCGGCAGAGGCAGGCCATAGTGGACGGGTTAAGAGAGAGCGTGCTTGGTTTCTCACACAATGTTCCAGGTACATCAGCAAGGGATGTAATGGACATGGTACTACTCACTCAGTATTTTGATACAATGAAAGATATTGGAGCGCATTCCAAATCTTCAGCTGTCTTTATTCCTCATGGACCAGGAGCGGTTGGTGATGTAGCTCAACAGA Osmunda_regalis_R13bR16R17R18 CCATTCTAAGATCAGAAAGCAAGAAAGATTATTCCTAAACCTCGTTATTCC-AAACAATCCCATCCTCCCCTCACCTCTTTAAT-AATTAGCAAATAAGCCAAATAATTATTCCCTGGCTTTGTGTGGAAGACTAACTTGTTTCAAGGCTTTCATACTCCCCC-TCTGTGCTTTAGCCA--GACTTGTACTTGATTGGTTCATTGAAAGCTTTTAGCCACGCAGACTCACACACTACAACAGGCATGGGAGCATGCCTCCATGTGGTTATGTCTTCACCCAAACAGCCAGGTCTTCTATGGTGTATTGGTTGTTCTACAGGCATGGAATTATTGT--------GCTAACTAGGTAGGATTTGGCTTTTCAGCTGCGAGGCTCAGAGTTGCAGCTACAGAGAAGGCAGAGGCTGAGAAGATCCTACAAGTGAAGCGGGCAGAGGCTGAGGCAGAATCAAAGTATCTATCTGGACTGGGGATTGCTCGGCAGAGGCAGGCCATAGTGGACGGGTTAAGAGAGAGCGTGCTTGGTTTCTCACACAATGTTCCAGGTACATCAGCAAGGGATGTAATGGACATGGTACTACTCACTCAGTATTTTGATACAATGAAAGATATTGGAGCGCATTCCAAATCTTCAGCTGTCTTTATTCCTCATGGACCAGGAGCGGTTGGTGATGTAGCTCAACAGA Osmunda_regalis_R1R2R4 CCATTCTAAGATCA-----------AGATTATTCCTAAACCTCGTTATTCCCAAACAATCCCATTCCCCCCTCACCTCTTTAAT-AATTAGCGAATAAGCCAAAGAATTATTCCCCGGCTTTGTGTGGAAGACTAACTTGTTTCAAGGCTTTCATACTCCCCC-TCTGTGCTTTAGCCA--GACTCGTACTTGATTGGTACATTGAAAGCTTTTAGCCACGCAGACTCACACACTACAACAGGCATGGGAGCATGCTTCCATGTGGTTATGTCTCCACCCAAACAGCCAGGTCTTCTATGGTGTATTGGTTGTTCTACAGGCATGAAATTATTGT--------GCTAACTAGGTAGGATTTGGCTTTTCAGCTGCGAGGCTCAGAGTTGCAGCTACAGAGAAGGCAGAGGCTGAGAAGATCCTACAAGTGAAGCGGGCAGAGGCTGAGGCAGAATCAAAGTATCTATCTGGACTGGGGATTGCTCGGCAGAGGCAGGCCATAGTGGATGGGTTAAGAGAGAGCGTGCTTGGTTTCTCACACAATGTTCCAGGTACATCAGCAAGGGATGTGATGGACATGGTACTACTCACTCAGTATTTTGATACAATGAAAGATATTGGAGCGCATTCCAAATCTTCAGCTGTCTTTATTCCTCATGGACCCGGAGCGGTTGGTGATGTAGCTCAACAGA Osmunda_regalis_R3 CCATTCTAAGATCA-----------AGATTATTCCTAAACCTCGTTATTCCCAAACAATCCCATTCCCCCCTCACCTCTTTAAT-AATTAGCGAATAAGCCAAAGAATTATTCCCCGGCTTTGTGTGGAAGACTAACTTGTTTCAAGGCTTTCATACTCCCCC-TCTGTGCTTTAGCCA--GACTCGTACTTGATTGGTACACTGAAAGCTTTTAGCCACGCAGACTCACACACTACAACAGGCATGGGAGCATGCTTCCATGTGGTTATGTCTCCACCCAAACAGCCAGGTCTTCTATGGTGTATTGGTTGTTCTACAGGCATGAAATTATTGT--------GCTAACTAGGTAGGATTTGGCTTTTCAGCTGCGAGGCTCAGAGTTGCAGCTACAGAGAAGGCAGAGGCTGAGAAGATCCTACAAGTGAAGCGGGCAGAGGCTGAGGCAGAATCAAAGTATCTATCTGGACTGGGGATTGCTCGGCAGAGGCAGGCCATAGTGGATGGGTTAAGAGAGAGCGTGCTTGGTTTCTCACACAATGTTCCAGGTACATCAGCAAGGGATGTGATGGACATGGTACTACTCACTCAGTATTTTGATACAATGAAAGATATTGGAGCGCATTCCAAATCTTCAGCTGTCTTTATTCCTCATGGACCCGGAGCGGTTGGTGATGTAGCTCAACAGA Osmunda_regalis_R11R12 CCATTCTAAGATCA-----------AGATTATTCCTAAACCTCGTTATTCCCAAACAATCCCATTCCCCCCTCACCTCTTTAAT-AATTAGCGAATAAGCCAAAGAATTATTCCCCGGCTTTGTGTGGAAGACTAACTTGTTTCAAGGCTTTCATACTCCCCC-TCTGTGCTTTAGCCA--GACTCGTACTTGATTGGTACATTGAAAGCTTTTAGCCACGCAGACTCACACACTACAACAGGCATGGGAGCATGCCTCCATGTGGTT--GTCTCCACCCAAACAGCCAGGTCTTCTATGGTGTATTGGTTGTTCTACAGGCATGAAATTATTGT--------GCTAACTAGGTAGGATTTGGCTTTTCAGCTGCGAGGCTCAGAGTTGCAGCTACAGAGAAGGCAGAGGCTGAGAAGATCCTACAAGTGAAGCGGGCAGAGGCTGAGGCAGAATCAAAGTATCTATCTGGACTGGGGATTGCTCGGCAGAGGCAGGCCATAGTGGATGGGTTAAGAGAGAGCGTGCTTGGTTTCTCACACAATGTTCCAGGTACATCAGCAAGGGATGTGATGGACATGGTACTACTCACTCAGTATTTTGATACAATGAAAGATATTGGAGCGCATTCCAAATCTTCAGCTGTCTTTATTCCTCATGGACCCGGAGCGGTTGGTGATGTAGCTCAACAGA Plenasium_banksiifolium CCATTTTAAGATCAGAAAGCAAGAAAGATTATTCTTGAGCCTCCTTATTACTAAACAATCCCATCCCCCCCTC--TTC---AATAAAATAGCAAATAAGACAAAGGATTATTCTCTGGCTTTGTGTGGAAGACTAACTTGTTTCAAGGCTTTCATATTCCCCCCTTGGTGCTTTAGCCATAGACTCGTATTTGATTGGTACATTGAAAGCTTTTAGCCACACAGACTCACACACTACAATAGGCATGGGAGCATGCCTTCATGTGGTTATGTCTCCACCCAAACAGCCAGGTCTTCTATGGTGTATTGG---CTCTTCAGGCATTGAATTATTGTATTATTGTGCTAACTAAGTAGGATTTGGCTTTTCAGCTGCGAGGCTTAGAGTTGCAGCTTCAGAGAAGGCAGAGGCTGAGAAGATCCTACAAGTGAAGCGGGCAGAGGCTGAGGCAGAATCAAAGTATCTTTCTGGACTGGGGATTGCTCGGCAGAGGCAGGCCATAGTGGATGGGTTAAGAGAGAGCGTGCTTGGTTTCTCACACAATGTTCCAGGTACATCAGCAAGGGATGTAATGGACATGGTACTACTCACTCAGTATTTTGATACAATGAAAGATATTGGTGCGCATTCCAAATCTTCAGCTGTCTTTATTCCTCATGGACCAGGAGCGGTTGGTGATGTAGCTCAGCAGA Osmunda_regalis_R8R9 CCATTCTAAGATCA-----------AGATTATTCCTAAACCTCGTTATTCCCAAACAATCCCATTCCCCCCTCACCTCTTGAAT-AATTAGCGAATAAGCCAAAGAATTATTCCCCGGCTTTGTGTGGAAGACTAACTTGTTTCAAGGCTTTCATACTCCCCC-TCTGTGCTTTAGCCA--GACTCGTACTTGATTGGTACATTGAAAGCTTTTAGCCACGCAGACTCACACACTACAACAGGCATGGGAGCATGCCTCCATGTGGTTATGTCTCCACCCAAACAGCCAGGTCTTCTATGGTGTATTGGTTGTTCTACAGGCATGAAATTATTGT--------GCTAACTAGGTAGGATTTGGCTTTTCAGCTGCGAGGCTCAGAGTTGCAGCTACAGAGAAGGCAGAGGCTGAGAAGATCCTACAAGTGAAGCGGGCAGAGGCTGAGGCAGAATCAAAGTATCTATCTGGACTGGGGATTGCTCGGCAGAGGCAGGCCATAGTGGATGGGTTAAGAGAGAGCGTGCTTGGTTTCTCACACAATGTTCCAGGTACATCAGCAAGGGATGTGATGGACATGGTACTACTCACTCAGTATTTTGATACAATGAAAGATATTGGAGCGCATTCCAAATCTTCAGCTGTCTTTATTCCTCATGGACCCGGAGCGGTTGGTGATGTAGCTCAACAGA Claytosmunda_claytoniana__CL1b CCATTTTAAGATCAGAAAGCAAGAAAGATTATTCCTAAATCCCCTTATTCTTAGACAATCCTATCCCCCCCTCACCTCTTTAATAAAATAGCAA----------GGATTAATCGCATGCTTTGTGTGGAAGACTAACCTGTTTCAAGGCTTTCATATTCCCCC-TCGGTGCTTTAGCCATAGACTCATACTTGATTGGTACATTGAAAGCTTcTAGCCACGCAGACTCACACAcTACAACAGGCAGGGGAGCATGCCTCCATGTGGTTATGTCTCCACCCAAACAGCCAGGTCTTCTATGGTGTATTGGTTGTTCTACAGGCATGAAATTATTGT--------GCTAACTAGATAGGATTTGGCTTTTCAGCTGCGAGGCTTAGAGTTGCAGCTACAGAGAAGGCAGAGGCTGAGAAGATCCTACAAGTGAAGCGGGCAGAGGCTGAGGCAGAATCAAAGTATCTATCTGGACTGGGGATTGCTcGGCAGAGGCAGGCCATAGTCGATGGGTTAAGAGAGAGCGTGCTTGGTTTCTCACACAATGTTCCAGGTACATCAGCAAGGGATGTAATGGACATGGTACTACTCACTCAGTATTTTGATACAATGAAAGATATTGGAGCGCATTCCAAATCTTCAGCTGTCTTTATTCCTCATGGACCAGGAGCAGTCGGTGATGTAGCTCAACAGA Claytosmunda_claytoniana_CL1aCL2 CCATTTTAAGATCAGAAAGCAAGAAAGATTATTCCTAAATCCCCTTATTCTTAGACAATCCTATCCCCCCCTCACCTCTTTAATAAAATAGCAA----------GGATTAATCGCATGCTTTGTGTGGAAGACTAACCTGTTTCAAGGCTTTCATATTCCCCC-TCGGTGCTTTAGCCATAGACTCATACTTGATTGGTACATTGAAAGCTTTTAGCCACGCAGACTCACACAATACAACAGGCAGGGGAGCATGCCTCCATGTGGTTATGTCTCCACCCAAACAGCCAGGTCTTCTATGGTGTATTGGTTGTTCTACAGGCATGAAATTATTGT--------GCTAACTAGATAGGATTTGGCTTTTCAGCTGCGAGGCTTAGAGTTGCAGCTACAGAGAAGGCAGAGGCTGAGAAGATCCTACAAGTGAAGCGGGCAGAGGCTGAGGCAGAATCAAAGTATCTATCTGGACTGGGGATTGCTAGGCAGAGGCAGGCCATAGTCGATGGGTTAAGAGAGAGCGTGCTTGGTTTCTCACACAATGTTCCAGGTACATCAGCAAGGGATGTAATGGACATGGTACTACTCACTCAGTATTTTGATACAATGAAAGATATTGGAGCGCATTCCAAATCTTCAGCTGTCTTTATTCCTCATGGACCAGGAGCAGTCGGTGATGTAGCTCAACAGA ; END; BEGIN MRBAYES; Prset statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); Lset nst = 2 rates = gamma; log start filename = L169.log replace; mcmcp ngen = 10000000 printfreq = 1000 samplefreq = 100 nchains = 4 savebrlens = yes filename = L169; mcmc; log stop; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 692; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 692; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 692; END; BEGIN TREES; Title L169tree; ID 0174bf301aad17; LINK Taxa = Taxa; TRANSLATE [0] 1 Osmunda_regalis_R10, [1] 2 Osmunda_japonica_J1J2J3J4J5J6J7J8, [2] 3 Osmunda_regalis_R14, [3] 4 Osmunda_lancea_L1L2L3, [4] 5 Osmunda_regalis_R5b, [5] 6 Osmunda_regalis_R5aR6, [6] 7 Osmunda_regalis_R7, [7] 8 Osmunda_regalis_R13aR15, [8] 9 Osmunda_regalis_R13bR16R17R18, [9] 10 Osmunda_regalis_R1R2R4, [10] 11 Osmunda_regalis_R3, [11] 12 Osmunda_regalis_R11R12, [12] 13 Plenasium_banksiifolium, [13] 14 Osmunda_regalis_R8R9, [14] 15 Claytosmunda_claytoniana__CL1b, [15] 16 Claytosmunda_claytoniana_CL1aCL2; TREE con_50_majrule = ((15:0.002877,16:0.004485)1.00:0.013737,(13:0.031154,((2:0.007269,3:0.00448,(1:0.002903,8:0.002925,9:0.001454):0.005846)1.00:0.00589,(4:0.017697,(6:0.002608,12:0.001491,14:0.002965,(5:0.002792,7:0.001808)0.83:0.002955,(10:0.001506,11:0.003001)0.98:0.002934)1.00:0.008938)0.95:0.003213)1.00:0.014014)1.00:0.013737)[% ] [% ] [% setBetweenBits = selected ]; TREE con_50_majrule = (1:0.002903,8:0.002925,9:0.001454,(2:0.007269,3:0.00448,((4:0.017697,((5:0.002792,7:0.001808):0.002955,6:0.002608,(10:0.001506,11:0.003001):0.002934,12:0.001491,14:0.002965):0.008938):0.003213,(13:0.031154,(15:0.002877,16:0.004485):0.027474):0.014014):0.00589):0.005846); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1600935719301; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 31704264599191286; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 507841020498298601; mqVersion 361; checksumv 0 3 1322404836 null getNumChars 692 numChars 692 getNumTaxa 16 numTaxa 16 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 241401.0 sumSquares 2.0752587082923266E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 296; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1414 1038; setLocation 965 155; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #507841020498298601 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -72; setLocation 965 155; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;