#NEXUS
[written Thu Sep 24 18:01:29 JST 2020 by Mesquite  version 3.61 (build 927) at tsutsumichie-no-iMac.local/202.220.64.189]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=8;
	TAXLABELS
		Osmunda_japonica_J2J3J4J5J6J7J8L1L2L3 Osmunda_regalis_R15 Osmunda_regalis_R1R5R6R7 Osmunda_japonica_J1 Osmunda_regalis_R14R16aR17R18 Osmunda_regalis_R13R16b Plenasium_banksiifolium Osmunda_regalis_R8R9 
	;

END;


BEGIN CHARACTERS;
	TITLE  Character_Matrix;
	DIMENSIONS  NCHAR=507;
	FORMAT DATATYPE = DNA GAP = - MISSING = ?;
	MATRIX
	Osmunda_japonica_J2J3J4J5J6J7J8L1L2L3  AATTTCGACGCAATTAACAATATTGCTGTGATGATCACCCCTACATCCAAGTCCTCAATTAAGGACTATGGCTCCCCTGAGCAGTTCCTTGAAGCTGTGAGTCATTCTGTTTTGAGCATCGACTATGAGTCTCTTTCTGATTCCCTCTAGTGCTTTGTCCTCATTCTGTCCAAATTTTCCTAACTGTGCGGCAATGTTGAACATGAAGGTTTCCTTCTTGCTAGGGAAGCAAGCGTATGCGGGCAAGACCCAGTCTGAGGTATGTAATTGACTGAAAAGGTCCTGTTGGCTGCTAGTTTTACTGGAATGTTCATGCAGTTCGTCAATCGTAAGGTGAATGTAAACCGACTGAGCCTGAATTTCACTTGGCCACAGGGTGGGTTCGACCCCAACGCGGTTGCAACTGCTGCCATCTTGGAGTCTTCAACTCCTCTTATTGACGGCAAACAATATTATAATCTTTCTGTTCTTACTCGCACTGCTGATGGTGGTGAGGGCGGGAAGCAT
	Osmunda_regalis_R15                    AATTTCGACGCAATTAACAATATTGCTGTGATGATCACCCCTACATCCAAGTCCTCAATTAAGGACTATGGCTCCCCTGAGCAGTTCCTTGAATCCGTGAGTCATTTTGTTTTGAGCATCGATTATGAGTCTCTTTCTGATTCCCTTTAGTGCTTTGTCCTCATTCCGTCCGAATTTTCCTAACTGTGCCGCAATGTTGAACCTGAAGGTTTCCTACTTGCTAGGGAAGCAAGCGTATGCGGGCAAGACCCAGTCTGAGGTATGTAATTGACTGCAAAGGTCCTGTTGGCTGCTAGTTTTACTGGAATGTTCATGCAGTTCGTCAATCGTAAGGTGAATGTAAACCGACTGAGCCTGAATTTCACTTGGCCACAGGGTGGGTTCGACCCCAACGCAGTTGCAACTGCTGCCATCTTGGAGTCTTCAACACCTGTTATTGACGGCAAACAATATTATAATCTTTCTGTTCTTACTCGGACTGCTGATGGTGGCGAGGGCGGGAAGCAT
	Osmunda_regalis_R1R5R6R7               AATTTCGACGCAATTAACAATATTGCTGTGATGATCACCCCTACATCCAAGTCCTCAATTAAGGACTATGGCTCCCCTGAGCAGTTCCTTGAAGCTGTGAGTCATTTTGTTTTCAGCATCGACTATGAGTCTCTTTCTGATTCCCTCTAGTGCTTTGTCCTCATTCTGTCCAAATTTTCCTAACTGTGCGGCAATGTTGAACATGAAGGTTTCCTTCTTGCTAGGGAAGCAAGCGTATGCGGGCAAGACCCAGTCTGAGGTATGTAATTGACTGAAAGGGTCCTGTTGGCTGCTAGTTTTACTGGAATGTTCATGCAGTTCGTCAATCGTAAGGTGAATGTAAACCGACTGAGCCTGAATTTCACTTGGCCACAGGGTGGGTTCGACCCCAACGCAGTTGCAACTGCTGCCATCTTGGAGTCCTCAACTCCTCTTATTGACGGCAAACAATATTATAATCTGTCTGTTCTTACTCGGACTGCTGATGGTGGTGAGGGCGGGAAGCAT
	Osmunda_japonica_J1                    AATTTCGACGCAATTAACAATATTGCTGTGATGATCACCCCTACATCCAAGTCCTCAATTAAGGACTATGGCTCCCCTGAGCAGTTCCTTGAAGCTGTGAGTCATTTTGTTTTGAGCATCGACTATGAGTCTCTTTCTGATTCCCTCTAGTGCTTTGTCCTCATTCTGTCCAAATTGTCCTAACTGTGCGGCAATGTTGAACATGAAGGTTTCCTTCTTGCTAGGGAAGCAAGCGTATGCGGGCAAGACCCAGTCTGAGGTATGTAATTGACTGAAAAGGTCCTGTTGGCTGCTAGTTTTACTGGAATGTTCATGCAGTTCGTCAATCGTAAGGTGAATGTAAACCGACTGAGCCTGAATTTCACTTGGCCACAGGGTGGGTTCGACCCCAACGCGGTTGCAACTGCTGCCATCTTGGAGTCTTCAACTCCTCTTATTGACGGCAAACAATATTATAATCTTTCTGTTCTTACTCGCACTGCTGATGGTGGTGAGGGCGGGAAGCAT
	Osmunda_regalis_R14R16aR17R18          AATTTCGACGCAATTAACAATATTGCTGTGATGATCACCCCTACATCCAAGTCCTCAATTAAGGACTATGGCTCCCCTGAGCAGTTCCTTGAAGCTGTGAGTCATTTTGTTTTGAGCATCGACTATGAGTCTCTTTCTGATTCCCTTTAGTGCTTTGTCCTCATTCTGTCCAAATTTTCCTAACTGTGTGGCAATGTTGAACATGAAGGTTTCCTTCTTGCTAGGGAAGCAAGCGTATGCGGGCAAGACCCAGTCTGAGGTATGTAATTGACTGAAAAGGTCCTGTTGGCTGCTAGTTTTACTGGAATGTTCATGCAGTTTGTCAATCGTAAGGTGAATGTAAACCGACTGAGCCTGAATTTCACTTGGCCACAGGGTGGGTTCGACCCCAACGCTGTTGCAACTGCTGCCATCTTGGAGTCTTCAACTCCGCTTATTGACGGCAAACAATATTATAATCTTTCTGTTCTTACTCGGACTGCTGATGGTGGTGAGGGCGGAAAGCAT
	Osmunda_regalis_R13R16b                AATTTCGACGCAATTAACAATATTGCTGTGATGATCACCCCTACATCCAAGTCCTCAATTAAGGACTATGGCTCCCCTGAGCAGTTCCTTGAAGCTGTGAGTCATTTTGTTTTGAGCATCGACTATGAGTTTCTTTCTGATTCCCTTTAGTGCTTTGTCCTCATTCTGTCCAAATTTTCCTAACTGTGTGGCAATGTTGAACATGAAGGTTTCCTTCTTGCTAGGGAAGCAAGCGTATGCGGGCAAGACCCAGTCTGAGGTATGTAATTGACTGAAAAGGTCCTGTTGGCTGCTAGTTTTACTGGAATGTTCATGCAGTTTGTCAATCGTAAGGTGAATGTAAACCGACTGAGCCTGAATTTCACTTGGCCACAGGGTGGGTTCGACCCCAACGCTGTTGCAACTGCTGCCATCTTGGAGTCTTCAACTCCGCTTATTGACGGCAAACAATATTATAATCTTTCTGTTCTTACTCGGACTGCTGATGGTGGTGAGGGCGGAAAGCAT
	Plenasium_banksiifolium                AATTTCGACGCACTTAACAATATTGCTGTGATGGTCACCCCTACATCCAAGTCCTCAATCAAGGACTATGGCTCCCCCGAGCAGTTCCTTGAAACTGTGAGTCGTTTTGTTTTGAGCATCAACTATGAGTCTCTTTCGGATTCTCTTTAGTGCTTTGTCCTCGCCCTGTCCAAATTTTCCTAACTGTGCGATTATGTGGAACAAGCAGGTTTCCTTCTTGCTAGGGAAGCAATCGTATGCGGGCAAGACCCAGTCTGAGGTATGTAATTGACTGAAAACGTCCTGTTGGCTGCTAGTTTTAGTGGAATGTTCATGCAGTTTATCAATCGTAAGGTGAATGCAAACTGACTGAAGCTGAATTTCACTTGGCCACAGGGTGGGTTCGACGCCAACGCAGTTGCAACTGCCGCCATCTTGGAGTCTTCAACTCCTCTTATTGACGGCAAACAGTATTATAATCTCTCTGTTCTTACTCGAACTGCTGATGGTGGTGAGGGCGGGAAACAT
	Osmunda_regalis_R8R9                   AATTTCGACGCAATTAACAATATTGCTGTGATGATCACCCCTACATCCAAGTCCTCAATTAAGGACTATGGCTCCCCTGAGCAGTTCCTTGAAGCTGTGAGTCATTTTGTTTTGAGCATCGACTATGAGTCTCTTTCTGATTCCCTTTAGTGCTTTGTCCTCATTCTGTCCAAATTTTCCTAACTGTGTGGCAATGTTGAACATGAAGGTTTCCTTCTTGCTAGGGAAGCAAGCGTATGCGGGCAAGACCCAGTCTGAGGTATGTAATTGACTGAAAAGGTCCTGTTGGCTGCTAGTTTTACTGGAATGTTCATGCAGTTTGTCAATCGTAAGGTGAATGTAAACCGACTGAGCCTGAATTTCACTTGGCCACAGGGTGGGTTCGACCCCAACGCTGTTGCAACTGCTGCCATCTTGGAGTCTTCAACTCCGCTTATTGACGGCAAACAATATTATAATCTTTCTGTTCTTACTCGGACTGCCGATGGTGGTGAGGGCGGAAAGCAT

;



END;

BEGIN MRBAYES;
	Prset statefreqpr = dirichlet ( 1 , 1 , 1 , 1 );
	Lset nst = 2 rates = equal;
log start filename = L459.log replace;
mcmcp ngen = 10000000 printfreq = 1000 samplefreq = 100
 nchains = 4 savebrlens = yes filename = L459Bayes;
mcmc;
log stop;

END;
BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1- 507;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1- 507;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Jukes-Cantor':  1- 507;
END;

BEGIN TREES;
	Title L459tree;
	ID 0174bf5675ab29;
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		1 Osmunda_japonica_J2J3J4J5J6J7J8L1L2L3,
[1] 		2 Osmunda_regalis_R15,
[2] 		3 Osmunda_regalis_R1R5R6R7,
[3] 		4 Osmunda_japonica_J1,
[4] 		5 Osmunda_regalis_R14R16aR17R18,
[5] 		6 Osmunda_regalis_R13R16b,
[6] 		7 Plenasium_banksiifolium,
[7] 		8 Osmunda_regalis_R8R9;
	TREE con_50_majrule = (7:0.033939,((5:0.001949,6:0.003888,8:0.003875)1.00:0.010546,(2:0.025913,(3:0.009882,(1:0.003872,4:0.003902):0.005929)1.00:0.003906)0.89:0.003794)0.69:0.033939)[% ] [% ] [%  setBetweenBits = selected ];
	TREE con_50_majrule = (1:0.003872,4:0.003902,((2:0.025913,((5:0.001949,6:0.003888,8:0.003875):0.010546,7:0.067878):0.003794):0.003906,3:0.009882):0.005929);

END;


Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1600938089542;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 6115403333265645259;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 540140002421755710;
			mqVersion 361;
			checksumv 0 3 2978432820 null  getNumChars 507 numChars 507 getNumTaxa 8 numTaxa 8   short true   bits 15   states 15   sumSquaresStatesOnly 100497.0 sumSquares 100497.0 longCompressibleToShort false usingShortMatrix true   NumFiles 1 NumMatrices 1;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState true false 296;
			setPopoutState 300;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 1299 1155;
			setLocation 1218 83;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			setActive;
			desuppress;
		endTell;
		getEmployee  #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord;
		tell It;
			showDataWindow #540140002421755710 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker;
			tell It;
				getWindow;
				tell It;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 0 -72;
					setLocation 1218 83;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
					endTell;
					setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow;
					colorCells  #mesquite.charMatrices.ColorByState.ColorByState;
				tell It;
					setStateLimit 9;
					toggleUniformMaximum on;
				endTell;
					colorRowNames  #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor;
					colorColumnNames  #mesquite.charMatrices.CharGroupColor.CharGroupColor;
					colorText  #mesquite.charMatrices.NoColor.NoColor;
					setBackground White;
					toggleShowNames on;
					toggleShowTaxonNames on;
					toggleTight off;
					toggleThinRows off;
					toggleShowChanges off;
					toggleSeparateLines off;
					toggleShowStates on;
					toggleReduceCellBorders off;
					toggleAutoWCharNames off;
					toggleAutoTaxonNames off;
					toggleShowDefaultCharNames off;
					toggleConstrainCW on;
					toggleBirdsEye off;
					toggleShowPaleGrid off;
					toggleShowPaleCellColors off;
					toggleShowPaleExcluded off;
					togglePaleInapplicable on;
					togglePaleMissing off;
					toggleShowBoldCellText off;
					toggleAllowAutosize off;
					toggleColorsPanel off;
					toggleLinkedScrolling on;
					toggleScrollLinkedTables off;
				endTell;
				getWindow;
				tell It;
					forceAutosize;
				endTell;
				hideWindow;
				getEmployee #mesquite.charMatrices.AlterData.AlterData;
				tell It;
					toggleBySubmenus off;
				endTell;
				getEmployee #mesquite.charMatrices.ColorCells.ColorCells;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel;
				tell It;
					togglePanel off;
				endTell;
				getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector;
				tell It;
					autotabOff;
				endTell;
				getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.align.AlignToDropped.AlignToDropped;
				tell It;
					gapCosts 16 6 1 1;
					subCosts  10 5 10 10 10 5 5 10 10 10 5 10;
				endTell;
				getEmployee #mesquite.molec.ColorByAA.ColorByAA;
				tell It;
					emphasizeDegeneracy off;
				endTell;
				getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		endTell;
end;