#NEXUS [written Thu Sep 24 18:12:16 JST 2020 by Mesquite version 3.61 (build 927) at tsutsumichie-no-iMac.local/202.220.64.189] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=20; TAXLABELS Osmunda_regalis_R10 Osmunda_japonica_J2J3J4J5J6J7J8 Osmunda_regalis_R15R17 Osmunda_lancea_L1a Osmunda_lancea_L1b Osmunda_regalis_R5R6R7 Osmunda_japonica_J1a Osmunda_japonica_J1b Osmunda_lancea_L2L3 Osmunda_regalis_R13a Osmunda_regalis_R13b Osmunda_regalis_R1 Osmunda_regalis_R2 Osmunda_regalis_R3 Osmunda_regalis_R11R12 Plenasium_banksiifolium Osmunda_regalis_R4 Osmunda_regalis_R8R9 Claytosmunda_claytoniana_CL2 Osmunda_regalis_R18 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=810; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Osmunda_regalis_R10 TCACACTGTCTTCCAAGAACGTGAAGAACTTGGAAAAGGGTGGGTTCTTTAGGACTTGGTAGCTGAATTTTCGTTTCCTTACCTTTTTGTTTCGATAGGTAGATCCATTCGGCTTATTAGC----------GTCTCTCTACCGGGTCGTTAACGGTACATCTTTGATGAAATAAAAACAAGGCGGCTTGACCGTTCGTTTGTTTTCTGTGTAGTTTGTGCGGATTTGGTAAGAGGTGCCAAAGACAAGAGGTTGAAGGTGAAGGGGCCTGTGAGGATGCCCACTAAAGTGCTGCATATCACAACACGGAAATCACCCTGCGGTGAAGGTCAGTATAATTCCCTGCCCGACATG-CTTTTTTCTTTCTGTTCATGGTATATTTGAGCAGGAGGGATGTGCAGGTCGCACTGAATCTGTTGTGTAAGTCTTTTTTGTTATTTTGTTGGGTTGAAGTATGATTGATTTTGGATTCTTCTGTCTCTCTCTCTGTTGTGAGCTCGGTAGAGCTCTGTGTTGTTTTCGGAGGCTCCACGACTCTCTTTTGAGGATCGCAGCGTCCTTGTATTGTAATGAGAAGCTCCCCATGTATTCTTAGTCTTCCGATGCAATACGGGTATAAGTATATTTCTTTCACTACGATTCTGTTTTGTTAATCATTGTGTCGAATCACTGACAGACCGAAAGAGGTGTTTTC----TCTATGACGCAGGTACCAACACTTGGGACCGATTTGAACTGCGAGTTCACAAGCGGGTGATTGATTTGCATAGTTCCTCGGAGGTGGTGAAGCAAATTACGTCTATCACAAT Osmunda_japonica_J2J3J4J5J6J7J8 TCACACTGTCTTCCAAGAACGTGAAGAACTTGGAAAAGGGTGGGTTCTTCAGGACTTGGTAGCTGAATTTTCGCTTCAGGAC----TTGTTTCTATAGGTAGATCCATTCGGCTTATTAGCTCCTGTTGTTGTCTGTCTACCGGGTCGTTAACGGTACATCTTTGAAGAAATAAAAATAAGGTGTCTTGACCGTTCGTTTGTTTTCTGTGTAGTTTGTGCGGATTTGGTAAGAGGCGCCAAAGACAAGAGGTTGAAGGTGAAGGGGCCTGTGAGGATGCCCACTAAAGTGCTGCATATCACAACACGGAAATCACCCTGCGGTGAAGGTCTGTATAATTCCCTGCCCGATATG-CTTTTTTCTTTCTGTTCATGGTATATTTGATCAGGAGAGATTTGCAGGTCGCACTGAATCTGTTGTGGAGGTCTTTTTTGTCATTTTGTTGTGTTGAAGTATGATTGATTTTGGAATCTTCT------CTCTCTGTTGTGAGCTCGGTGGAGCTCTCTGTTGTT----------CCACGACTCTCATTTGAGGTTCGCAGCGTCCTTGTATTGTAATGTGAAGCTCCCCATGTATTCTTAGTCTTCCGATGCAATACGGGTATAATTG--TTTCTTTCACTACGATTCTGTTTTGTTAATCATTGTGTCGAATCACTGACCGACCGGACGAGGTGTTTTC----TCTATGACGCAGGTACCAACACTTGGGACCGATTTGAACTGCGAGTTCACAAGCGGGTGATTGATTTGCATAGTTCCTCGGAGGTGGTGAAGCAAATTACGTCTATCACAAT Osmunda_regalis_R15R17 TCACACTGTCTTCCAAGAACGTGAAGAACTTGGAAAAGGGTGGGTTCTTTAGGACTTGGTAGCTGAATTTTCGCTTCCTTACCTTTTTGTTTCGATAGGTAGATCCATTCGGCTTATTAGC----------GTCTCTCTACCGGGTCGTTAACGGTACATCTTTGATGAAATAAAAACAAGGTGGCTTGACCGTTCGTTTGTTTTCTGTGTAGTTTGTGCGGATTTGGTAAGAGGTGCCAAAGACAAGAGGTTGAAGGTGAAGGGGCCTGTGAGGATGCCCACTAAAGTGCTGCATATCACAACACGGAAATCACCCTGCGGTGAAGGTCAGTATAATTCCCTGCCCGATATG-CTTTTTTCTTTCTGTTCATGGTATATTTGAGCAGGAGGGATGTGCAGGTCGCACTGAATCTGTTGTGTAAGTCTTTTTTGTTATTTTGTTGGGTTGAAGTATGATTGATTTTGGATTCTTCT----CTCTCTCTGTTGTGAGCTCGGTGGAGCTCTGTGTTGTTTTCGGAGGCTCCACGACTCTCTTTTGAGGATCGCAGCGTCCTTGTATTGTAATGTGAAGCTCCCCATGTATTCTTAGTCTTCCGATGCAATACGGGTATAAGTGTATTTCTTTCACTACGATTCTGTTTTGTTAATCATTGTGTCGAATCACTGACCGACCGAAAGAGGTGTTTTC----TCTATGACGCAGGTACCAACACTTGGGACCGATTTGAACTGCGAGTTCACAAGCGGGTGATTGATTTGCATAGTTCCTCGGAGGTGGTGAAGCAAATTACGTCTATCACAAT Osmunda_lancea_L1a TCACACTGTCTTCCAAGAACGTGAAGAACTTGGAAAAGGGTGGGTTCTTCAGGACTTGGTAGCTGAATTTTCGCTTCAGGAC----TTGTTTCTATAGGTAGATCCATTCGGCTTATTAGCTCCTGTTGTTGTCTGTCTACCGGGTCGTTAACGGTATATCTTTGATGAAATAAAAATAaGGTGTCTTGACCGTTCGTTTGTTTTCTGTGTAGTTTGTGCGGATTTGGTAAGAGGCGCCAAAGACAAGAGGTTGAAGGTGAAGGGGCCTGTGAGGATGCCCACTAAAGTGCTGCATATCACAACTCGGAAATCACCCTGCGGTGAAGGTCTGTATAATTCCCTGCCCGATATG-CTTTTTTCTTTCTGTTCATGGTATATTTGATCAGGAGGGATTTGCAGGTCGCACTGAATCTGTTGTGGAGGTCTTTTTTGTTATTTTGTTGTGTTGAAGTATGATTGATTTTGGAATCTTCT----CTCTCTCTGTTGTGAGCTCGGTGGAGCTCTCTGTTGTTTTCGGAGGCTCCACGACTCTCATTTGAGGATCGCAGCGTCCTTGTATTGTAATGTGAAGCTCCCCATGTATTCTTAGTCTTCCGATGCAATACGGGTATAAGTGTATTTCTTTCACTACGATTCTGTTTTGTTAATCATTGTGTCGAATCACTGACCGACCGGACGAGGTGTTTTC----TCTATGACGCAGGTACCAACACTTGGGACCGATTTGAACTGCGAGTTCACAAGCGGGTGATTGATTTGCATAGTTCCTCGGAGGTGGTGAAGCAAATTACGTCTATCACAAT Osmunda_lancea_L1b TCACACTGTCTTCCAAGAACGTGAAGAACTTGGAAAAGGGTGGGTTCTTCAGGACTTGGTAGCTGAATTTTCGCTTCAGGAC----TTGTTTCTATAGGTAGATCCATTCGGCTTATTAGCTCCTGTTGTTGTCTGTCTACCGGGTCGTTAACGGTATATCTTTGATGAAATAAAAATAgGGTGTCTTGACCGTTCGTTTGTTTTCTGTGTAGTTTGTGCGGATTTGGTAAGAGGCGCCAAAGACAAGAGGTTGAAGGTGAAGGGGCCTGTGAGGATGCCCACTAAAGTGCTGCATATCACAACTCGGAAATCACCCTGCGGTGAAGGTCTGTATAATTCCCTGCCCGATATG-CTTTTTTCTTTCTGTTCATGGTATATTTGATCAGGAGGGATTTGCAGGTCGCACTGAATCTGTTGTGGAGGTCTTTTTTGTTATTTTGTTGTGTTGAAGTATGATTGATTTTGGAATCTTCT----CTCTCTCTGTTGTGAGCTCGGTGGAGCTCTCTGTTGTTTTCGGAGGCTCCACGACTCTCATTTGAGGATCGCAGCGTCCTTGTATTGTAATGTGAAGCTCCCCATGTATTCTTAGTCTTCCGATGCAATACGGGTATAAGTGTATTTCTTTCACTACGATTCTGTTTTGTTAATCATTGTGTCGAATCACTGACCGACCGGACGAGGTGTTTTC----TCTATGACGCAGGTACCAACACTTGGGACCGATTTGAACTGCGAGTTCACAAGCGGGTGATTGATTTGCATAGTTCCTCGGAGGTGGTGAAGCAAATTACGTCTATCACAAT Osmunda_regalis_R5R6R7 TCACACTGTCTTCCAAGAACGTGAAGAACTTGGAAAAGGGTGGGTTCTTCAGGACTTGGTAGCTGAATTTTCGCTTCAGGAC----TTGTTTCTATAGGTAGATCCATTCGGCTTATTAGCTCCTGTTGTTGTCTGTCTACCGGGTCGTTAACGGTACATCTTTGATGAAATAAAAATAAGGCGTCTTGACCGTTCGTTTGTTTTCTGTGTAGTTTGTGCGGATTTGGTAAGAGGCGCCAAAGACAAGAGGTTGAAGGTGAAGGGGCCTGTGAGGATGCCCACTAAAGTGCTGCATATCACAACACGGAAATCACCCTGCGGTGAAGGTCAGTATAATTCCCTGCCCGATATG-CTTTTTTCTTTCTGTCCATGGTATATTTGATCAGGAGGGATTTGCAGGTCGCACTGAATCTGTTGTG---GTCTTTTTTGTCATTTTGTTGTGTTGAAGTATGATCGATTTTGGAATCTTCT--CTCTCTCTCTGTTGTGAGCTCGGTGGAGCTCTCTGTTGTTTTCGGAGGCTCCACGACTCTCATTTGAGGATCGCAGCGTCCTTGTATTGTAATGTGAAGCTCCCCATGTATTCTTAGTCTTCCGATGCAATACGGATATAAGTGTATTTCTTTCACTACGATTCTGTTTTGTTAATCATTGTGTCGAATCACTGACCGACCGGACGAGGTGTTTTC----TCTATGACGCAGGTACCAACACTTGGGACCGATTTGAACTGCGAGTTCACAAGCGGGTGATTGATTTGCATAGTTCCTCGGAGGTGGTGAAGCAAATTACGTCTATCAC--- Osmunda_japonica_J1a TCACACTGTCTTCCAAGAACGTGAAGAACTTGGAAAAGGGTGGGTTCTTCAGGACTTGGTAGCTGAATTTTCGCTTCAGGAC----TTGTTTCTATAGGTAGATCCATTCGGCTTATTAGCTCCTGTTGTTGTCTGTCTACCGGGTCGTTAACGGTACATCTTTGAAGAAATAAAAATAAGGTGTCTTGACCGTTCGTTTGTTTTCTGTGTAGTTTGTGCGGATTTGGTAAGAGGCGCCAAAGACAAGAGGTTGAAGGTGAAGGGGCCTGTGAGGATGCCCACTAAAGTGCTGCATATCACAACACGGAAATCACCCTGCGGTGAAGGTCaGTATAATTCCCTGCCCGATATG-CTTTTTTCTcTCTGTTCATGGTATATTTGATCAGGAGgGATTTGCAGGTCGCACTGAATCTGTTGTGGAGGTCTTTTTTGTCATTTTGTTGTGTTGAAGTATGATTGATTTTGGAATCTTCT------CTCTCTGT??????CTC?GT?G???TC???G?????------------?C????CTC???T??G???-?C???G??????T?T??T????TG?????C?CC???T?T??T?????T???????????A??????TA????T?TTTCTTTCACTACGATTCTGTTTTGTTAATCATTGTGTCGAATCACTGACCGACCGGACGAGGTGTTTTC----TCTATGACGCAGGTACCAACACTTGGGACCGATTTGAACTGCGAGTTCACAAGCGGGTGATTGATTTGCATAGTTCCTCGGAGGTGGTGAAGCAAATTACGTCTATCACAAT Osmunda_japonica_J1b TCACACTGTCTTCCAAGAACGTGAAGAACTTGGAAAAGGGTGGGTTCTTCAGGACTTGGTAGCTGAATTTTCGCTTCAGGAC----TTGTTTCTATAGGTAGATCCATTCGGCTTATTAGCTCCTGTTGTTGTCTGTCTACCGGGTCGTTAACGGTACATCTTTGAAGAAATAAAAATAAGGTGTCTTGACCGTTCGTTTGTTTTCTGTGTAGTTTGTGCGGATTTGGTAAGAGGCGCCAAAGACAAGAGGTTGAAGGTGAAGGGGCCTGTGAGGATGCCCACTAAAGTGCTGCATATCACAACACGGAAATCACCCTGCGGTGAAGGTCtGTATAATTCCCTGCCCGATATG-CTTTTTTCTtTCTGTTCATGGTATATTTGATCAGGAGaGATTTGCAGGTCGCACTGAATCTGTTGTGGAGGTCTTTTTTGTCATTTTGTTGTGTTGAAGTATGATTGATTTTGGAATCTTCT------CTCTCTGT??????CTC?GT?G???TC???G?????------------?C????CTC???T??G???-?C???G??????T?T??T????TG?????C?CC???T?T??T?????T???????????A??????TA????T?TTTCTTTCACTACGATTCTGTTTTGTTAATCATTGTGTCGAATCACTGACCGACCGGACGAGGTGTTTTC----TCTATGACGCAGGTACCAACACTTGGGACCGATTTGAACTGCGAGTTCACAAGCGGGTGATTGATTTGCATAGTTCCTCGGAGGTGGTGAAGCAAATTACGTCTATCACAAT Osmunda_lancea_L2L3 TCACACTGTCTTCCAAGAACGTGAAGAACTTGGAAAAGGGTGGGTTCTTCAGGACTTGGTAGCTGAATTTTCGCTTCAGGAC----TTGTTTCTATAGGTAGATCCATTCGGCTTATTAGCTCCTGTTGTTGTCTGTCTACCGGGTCGTTAACGGTACATCTTTGATGAAATAAAATTAAGGTGTCTTGACCGTTCGTTTGTTTTCTGTGTAGTTTGTGCGGATTTGGTAAGAGGCGCCAAAGACAAGAGGTTGAAGGTGAAGGGGCCTGTGAGGATGCCCACTAAAGTGCTGCATATCACAACTCGGAAATCACCCTGCGGTGAAGGTCTGTATAATTCCCTGCCCGATATG-CTTTTTTCTTTCTGTTCATGGTATATTT-ATCAGGAGGGATTTGCAGGTCGCACTGAATCTGTTGTGGAGGTCTTTTTTGTCATTTTGTTGTGTTGAAGTATGATTGATTTTGGAATCTTCT----CTCTCTCTGTTGTGAGCTCGGTGGAGCTCTCTGTTGTTTTCGGAGGCTCCACGACTCTCATTTGAGGATCGCAGCGTCCTTGTATTGTAATGTGAAGCTCCCCATGTATTCTTAGTCTTCCGATGCAATACGGGTATAAGTGTATTTCTTTCACTACGATTCTGTTTTGTTAATCATTGTGTCGAATCACTGACCGACCGGACGAGGTGTTTTC----TCTATGACGCAGGTACCAACACTTGGGACCGATTTGAACTGCGAGTTCACAAGCGGGTGATTGATTTGCATAGTTCCTCGGAGGTGGTGAAGCAAATTACGTCTATCACAAT Osmunda_regalis_R13a TCACACTGTCTTCCAAGAACGTGAAGAACTTGGAAAAGGGTGGGTTCTTCAGGACTTGGTAGCTGAATTTTCTCTTTCTTACCTTTTTGTTTCTATAGGTAGATCTATTCGGCTTATTAGCTCCCGTTGTTGTCTCTCTACCGGGTCGTTAACGGTACATCTTTGATGAAATAAAAACAAGGTGGCTTGACCGTTCGTTTGTTTTCTGTGTAGTTTGTGCGGATTTGGTAAGAGGTGCCAAAGACAAGAGGTTGAAGGTGAAGGGGCCTGTGAGGATGCCCACTAAAGTGCTGCATATCACAACACGGAAATCACCCTGCGGTGAAGGTCAGTATAATTCCCTGCCCGATGTG-CTTTTTTCTTTCTGTTCATGGTATATTTGAGCAGGAGGGATGTGCAGGTCGCACTGAATCTGTTGTGGAAGTCTTTTTTGTTATTTTGTTGGGTTGAAGTATGATTGATTTTGGGTTCTTCT----CTCTCTCTGTTGTGAGCTCGGTGGAGCTCTGTGTTGTTTTCGGAGGCTCCACGACTCTCTTTTGAGGATCGCAGCGTCCTTGTATTGTAATGTGAAGCTCCCCATGTATTCTTAGTCTTCCGATGCAATACGGGTATAAGTGTATTTCTTTCACTACGATTCTGTTTTGTTAATCATTGTGTCGAATCACTGACCGACCGGACGAGGTGTTTTC----TCTATGACGCAGGTACCAACACTTGGGACCGATTTGAACTGCGAGTTCACAAGCGGGTGATTGATTTGCATAGTTCCTCGGAGGTGGTGAAGCAAATTACGTCTATCACAAT Osmunda_regalis_R13b TCACACTGTCTTCCAAGAACGTGAAGAACTTGGAAAAGGGTGGGTTCTTTAGGACTTGGTAGCTGAATTTTCGCTTCCTTACCTTTTTGTTTCGATAGGTAGATCCATTCGGCTTATTAGC----------GTCTCTCTACCGGGTCGTTAACGGTACATCTTTGATGAAATAAAAACAAGGTGGCTTGACCGTTCGTTTGTTTTCTGTGTAGTTTGTGCGGATTTGGTAAGAGGTGCCAAAGACAAGAGGTTGAAGGTGAAGGGGCCTGTGAGGATGCCCACTAAAGTGCTGCATATCACAACACGGAAATCACCCTGCGGTGAAGGTCAGTATAATTCCCTGCCCGATATG-CTTTTTTCTTTCTGTTCATGGTATATTTGAGCAGGAGGGATGTGCAGGTCGCACTGAATCTGTTGTGTAAGTCTTTTTTGTTATTTTGTTGGGTTGAAGTATGATTGATTTTGGATTCTTCT----CTCTCTCTGTTGTGAGCTCGGTGGAGCTCTGTGCTGTTTTCGGAGGCTCCACGACTCTCTTTTGAGGATCGCAGCGTCCTTGTATTGTAATGTGAAGCTCCCCATGTATTCTTAGTCTTCCGATGCAATACGGGTATAAGTGTATTTCTTTCACTACGATTCTGTTTTGTTAATCATTGTGTCGAATCACTGACCGACCGAAAGAGGTGTTTTC----TCTATGACGCAGGTACCAACACTTGGGACCGATTTGAACTGCGAGTTCACAAGCGGGTGATTGATTTGCATAGTTCCTCGGAGGTGGTGAAGCAAATTACGTCTATCACAAT Osmunda_regalis_R1 TCACACTGTCTTCCAAGAACGTGAAGAACTTGGAAAAGGGTGGGTTCTTCAGGACTTGGTAGCTGAATTTTCGCTTCAGGAC----TTGTTTCTATAGGTAGATCCATTCGGCTTATTAGCTCCTGTTGTTGTCTGTCTACCGGGTCGTTAACGGTACATCTTTGAAGAAATAAAAATAAGGTGTCTTGACCGTTCGTTTGTTTTCTGTGTAGTTTGTGCGGATTTGGTAAGAGGCGCCAAAGACAAGAGGTTGAAGGTGAAGGGGCCTGTGAGGATGCCCACTAAAGTGCTGCATATCACAACACGGAAATCACCCTGCGGTGAAGGTCAGTATAATTCCCTGCCCGATATG-CTTTTTTCTCTCTGTTCATGGTATATTTGATCAGGAGGGATTTGCAGGTCGCACTGAATCTGTTGTGGAGGTCTTTTTTGTCATTTTGTTGTGTTGAAGTATGATTGATTTTGGAATCTTCT----CTCTCTCTGTTGTGAGCTCGGTGGAGCTCTCTGTTGTTTTCGGAGGCTCCACGACTCTCATTTGAGGATTGCAGCGTCCTTGTATTGTAATGTGAAGCTCCCCATGTATTCTTAGTCTTCCGATGCAATACGGATATAAGTGTATTTCTTTCACTACGATTCTGTTTTGTTAATCATTGTGTCGAATCACTGACCGACCGGACGAGGTGTTTTC----TCTATGACGCATGTACCAACACTTGGGACCGATTTGAACTGCGAGTTCACAAGCGGGTGATTGATTTGCATAGTTCCTCGGAGGTGGTGAAGCAAATTACGTCTATCACAAT Osmunda_regalis_R2 TCACACTGTCTTCCAAGAACGTGAAGAACTTGGAAAAGGGTGGGTTCTTCAGGACTTGGTAGCTGAATTTTCGCTTCAGGAC----TTGTTTCTATAGGTAGATCCATTCGGCTTATTAGCTCCTGTTGTTGTCTGTCTACCGGGTCGTTAACGGTACATCTTTGAAGAAATAAAAATAAGGTGTCTTGACCGTTCGTTTGTTTTCTGTGTAGTTTGTGCGGATTTGGTAAGAGGCGCCAAAGACAAGAGGTTGAAGGTGAAGGGGCCTGTGAGGATGCCCACTAAAGTGCTGCATATCACAACACGGAAATCACCCTGCGGTGAAGGTCAGTATAATTCCCTGCCCGATATG-CTTTTTTCTCTCTGTTCATGGTATATTTGATCAGGAGGGATTTGCAGGTCGCACTGAATCTGTTGTGGAGGTCTTTTTTGTCATTTTGTTGTGTTGAAGTATGATTGATTTTGGAATCTTCT----CTCTCTCTGTTGTGAGCTCGGTGGAGCTCTCTGTTGTTTTCGGAGGCTCCACGACTCTCATTTGAGGATTGCAGCGTCCTTGTATTGTAATGTGAAGCTCCCCATGTATTCTTAGTCTTCCGATGCAATACGGATATAAGTGTATTTCTTTCACTACGATTCTGTTTTGTTAATCATTGTGTCGAATCACTGACCGACCGGACGAGGTGTTTTC----TCTATGACGCAGGTACCAACACTTGGGACCGATTTGAACTGCGAGTTCACAAGCGGGTGATTGATTTGCATAGTTCCTCGGAGGTGGTGAAGCAAATTACGTTTATCACAAT Osmunda_regalis_R3 TCACACTGTCTTCCAAGAACGTGAAGAACTTGGAAAAGGGTGGGTTCTTCAGGACTTGGTAGCTGAATTTTCGCTTCAGGAC----TTGTTTCTATAGGTAGATCCATTCGGCTTATTAGCTCCTGTTGTTGTCTGTCTACCGGGTCGTTAACGGTACATCTTTGAAGAAATAAAAATAAGGTGTCTTGACCGTTCGTTTGTTTTCTGTGTAGTTTGTGCGGATTTGGTAAGAGGCGCCAAAGACAAGAGGTTGAAGGTGAAGGGGCCTGTGAGGATGCCCACTAAAGTGCTGCATATCACAACACGGAAATCACCCTGCGGTGAAGGTCAGTATAATTCCCTGCCCGATATG-CTTTTTTCTCTCTGTTCATGGTATATTTGATCAGGAGGGATTTGCAGGTCGCACTGAATCTGTTGTGGAGGTCTTTTTTGTCATTTTGTTGTGTTGAAGTATGATTGATTTTGGAATCTTCT----CTCTCTCTGTTGTGAGCTCGGTGGAGCTCTCTGTTGTTTTCGGAGGCTCCACGACTCTCATTTGAGGATTGCAGCGTCCTTGTATTGTAATGTGAAGCTCCCCATGTATTCTTAGTCTTCCGATGCAATACGGATATAAGTGTATTTCTTTCACTACGATTCTGTTTTGTTAATCATTGTGTCGAATCACTGACCGACCGGACGAGGTGTTTTC----TCTATGACGCAGGTACCAACACTTGGGACCGATTTGAACTGCGAGTTCACAAGCGGGTGATTGATTTG-------------------------------------------- Osmunda_regalis_R11R12 TCACACTGTCTTCCAAGAACGTGAAGAACTTGGAAAAGGGTGGGTTCTTCAGGACTTGGTAGCTGAATTTTCTCTTTCTTACCTTTTTGTTTCTATAGGTAGATCTATTCGGCTTATTAGCTCCCGTTGTTGTCTCTCTACCGGGTCGTTAACGGTACATCTTTGATGAAATAAAAACAAGGTGGCTTGACCGTTCGTTTGTTTTCTGTGTAGTTTGTGCGGATTTGGTAAGAGGTGCCAAAGACAAGAGGTTGAAGGTGAAGGGGCCTGTGAGGATGCCCACTAAAGTGCTGCATATCACAACACGGAAATCACCCTGTGGTGAAGGTCAGTATAATTCCCTGCCCGATATG-CTTTTCTCTTTCTGTTCATGGTATATTTGAGCAGGAGGGATGTGCAGGTCGCACTGAATCTGTTGTGGAAGTCTTTTTTGTTATTTTGTTGGGTTGAAGTATGATTGATTTTGGATTCTTCT----CTCTCTCTGTTGTGAGCTCGGTGGAGCTCTGTGTTGTTTTCGGAGGCTCCACGACTCTCTTTTGAGGATCGCCGCGTCCTTGTATTGTAATGTGAAGCTCCCCATGTATTCTTAGTCTTCCGATGCAATACGGATATAAGTGTATTTCTTTCACTACGATTCTGTTTTGTTAATCATTATGTCGAATCACTGACCGACCGGACGAGGTGTTTTC----TTTATGACGCAGGTACCAACACTTGGGACCGATTTGAACTGCGAGTTCACAAGCGGGTGATTGATTTGCATAGTTCCTCGGAGGTGGTGAAGCAAATTACGTCTATCACAAT Plenasium_banksiifolium TCACACTGTCTTCCAAGAACGTGAAGAACTTGGAAAAGGGTGAGTGCTTC------------------------------------------------------------TGCTCATGAGCTCCTGTTGTTTTCTCGCTTCTGGGTCTTGAAAGGTACATCTTTGGTGAAATAAAAATAAGGTGGCTTGACCGTTCGTTTGTTTTCTGTGTAGTTTGTGCGGATTTGGTAAGAGGTGCCAAAGACAAGAGGTTGAAGGTGAAGGGGCCTGTGAGGATGCCCACTAAAGTGCTGCATATCACAACACGGAAGTCACCCTGTGGTGAAGGTCAGATATGTT----------------TTCTTTCTTTCGGTTCTTGGTATATATTAACAGGAGGGATGTACAGATCGCACTTAATCTGTTGTGGAGGTCTTTTTTGTTATTTTGTTGGGTTGAAGTATGATTGATTTTGGAATCTTCA----------CTGTTGTGAGGTCGGCGGAGCTATGTGTTGCTCTGGGAGACTCCACGACTCTCTTTTGTGGATCGCAGCGTCCTTGTAGTGTAATGTGAAGCTCCCCGTGTATTCTTAGTCCTCCGATGCAATTCGGGTATAAGTGTAGCTCGTTCACTTCTACTCTGTGTTGTTGATC-----GTCGTGTCGAATCTCTGACCGACCGGAAGAGTTC----TCTATAATGCAGGTACCAACACTTGGGACCGATTTGAACTGCGAGTGCACAAGCGGGTGATTGACTTGCATAGTTCATCGGAGGTGGTGAAGCAAATTACGTCTATCACAAT Osmunda_regalis_R4 TCACACTGTCTTCCAAGAACGTGAAGAACTTGGAAAAGGGTGGGTTCTTCAGGACTTGGTAGCTGAATTTTCGCTTCAGGAC----TTGTTTCTATAGGTAGATCCATTCGGCTTATTAGCTCCTGTTGTTGTCTGTCTACCGGGTCGTTAACGGTACATCTTTGAAGAAATAAAAATAAGGTGTCTTGACCGTTCGTTTGTTTTCTGTGTAGTTTGTGCGGATTTGGTAAGAGGCGCCAAAGACAAGAGGTTGAAGGTGAAGGGGCCTGTGAGGATGCCCACTAAAGTGCTGCATATCACAACACGGAAATCACCCTGCGGTGAAGGTCAGTATAATTCCCTGCCCGATATG-CTTTTTTCTCTCTGTTCATGGTATATTTGATCAGGAGGGATTTGCAGGTCGCACTGAATCTGTTGTGGAGGTCTTTTTTGTCATTTTGTTGTGTTGAAGTATGATTGATTTTGGAATCTTCT----CTCTCTCTGTTGTGAGCTCGGTGGAGCTCTCTGTTGTTTTCGGAGGCTCCACGACTCTCATTTGAGGATTGCAGCGTCCTTGTATTGTAATGTGAAGCTCCCCATGTATTCTTAGTCTTCCGATGCAATACGGATATAAGTGTATTTCTTTCACTACGATTCTGTTTTGTTAATCATTGTGTCGAATCACTGACCGACCGGACGAGGTGTTTTC----TCTATGACGCAGGTACCAACACTTGGGACCGATTTGAACTGCGAGTTCACAAGCGGGTGATTGATTTGCATAGTTCCTCGGAGGTGGTGAAGCAAATTACGTCTATCACAAT Osmunda_regalis_R8R9 TCACACTGTCTTCCAAGAACGTGAAGAACTTGGAAAAGGGTGGGTTCTTCAGGACTTGGTAGCTGAATTTTCGCTTCAGGAC----TTGTTTCTATAGGTAGATCCATTCGGCTTATTAGCTCCTGTTGTTGTCTGTCTACCGGGTCGTTAACGGTACATCTTTGATGAAATAAAAATAAGGCGTCTTGACCGTTCGTTTGTTTTCTGTGTAGTTTGTGCGGATTTGGTAAGAGGCGCCAAAGACAAGAGGTTGAAGGTGAAGGGGCCTGTGAGGATGCCCACTAAAGTGCTGCATATCACAACACGGAAATCACCCTGCGGTGAAGGTCAGTATAATTCCCTGCCCGATATG-CTTTTTTCTTTCTGTCCATGGTATATTTGATCAGGAGGGATTTGCAGGTCGCACTGAATCTGTTGTG---GTCTTTTTTGTCATTTTGTTGTGTTGAAGTATGATCGATTTTGGAATCTTCT----CTCTCTCTGTTGTGAGCTCGGTGGAGCTCTCTGTTGTTTTCGGAGGCTCCACGACTCTCATTTGAGGATCGCAGCGTCCTTGTATTGTAATGTGAAGCTCCCCATGTATTCTTAGTCTTCCGATGCAATACGGATATAAGTGTATTTCTTTCACTACGATTCTGTTTTGTTAATCATTGTGTCGAATCACTGACCGACCGGACGAGGTGTTTTC----TCTATGACGCAGGTACCAACACTTGGGACCGATTTGAACTGCGAGTTCACAAGCGGGTGATTGATTTGCATAGTTCCTCGGAGGTGGTGAAGCAAATTACGTCTATCACAAT Claytosmunda_claytoniana_CL2 TCACACTGTCTTCCAAGAACGTGAAGAACTTGGAAAAGGGTGGGTTCTTCAGGACTTGGTAGCTGAATTTT-----------------GTTTCTATGGGTAGATCTATTCGGCTTATTAGCTCCTGTTGTTGTCTCTCTACTGGGTCGTCAGAGGTACATCTTTGATGAAATAAAAAGAAGGTGGCTTGACCGTTCGTTTGTTTTCTGTGTAGTTTGTGCGGATTTGGTAAGAGGTGCCAAAGACAAGAGGTTGAAGGTGAAGGGGCCTGTGAGGATGCCCACTAAAGTGCTGCATATCACAACACGGAAATCACCCTGCGGTGAAGGTCAGTATAATTCCCTGTTCGATATGGCTTTTTTCTTTCTGTTCATGGTATATATGAGCAGGAGGGATGTACGGGTCGCACTTAATGTGTTGTGGATGTCTTCGTTGTTATTTTGTTGGGTTGAAGTATGATTGATTTTGGAATCTTCT----------CTGTTGTGAGCTCGGTGGAGCTATGTGTTGCTCTC-----CTCCACGACTCTCTTTTGTGGATCGCAGCGTCCTTGTATTGTAATGTGAAGCTCCCCGTGTATTCTTAGTCTTCCGATGCAATTCGAGTATAAGTGTAGTTCTTTCTCTCCGACTTTGTTTTGTTAATCATTGTGTCGAATCACTTACCGACCGGAAGAGGTGTATTCATTCTCTATGACGCAGGTACCAACACTTGGGACCGATTTGAACTCCGAGTTCACAAGCGCGTGATTGACTTGCATAGTTCCTCGGAGGTGGTGAAGCAAATTACGTCCATCACAAT Osmunda_regalis_R18 TCACACTGTCTTCCAAGAACGTGAAGAACTTGGAAAAGGGTGGGTTCTTCAGGACTTGGTAGCTGAATTTTCTCTTTCTTACCTTTTTGTTTCTATAGGTAGATCTATTCGGCTTATTAGCTCCCGTTGTTGTCTCTCTACCGGGTCGTTAACGGTACATCTTTGATGAAATAAAAACAAGGTGGCTTGACCGTTCGTTTGTTTTCTGTGTAGTTTGTGCGGATTTGGTAAGAGGTGCCAAAGACAAGAGGTTGAAGGTGAAGGGGCCTGTGAGGATGCCCACTAAAGTGCTGCATATCACAACACGGAAATCACCCTGCGGTGAAGGTCAGTATAATTCCCTGCCCGATGTG-CTTTTTTCTTTCTGTTCATGGTATATTTGAGCAGGAGGGATGTGCAGGTCGCACTGAATCTGTTGTGGAAGTCTTTTTTGTTATTTTGTTGGGTTGAAGTATGATTGATTTTGGGTTCTTCT----CTCTCTCTGTTGTGAGCTCGGTGGAGCTCTGTGTTGTTTTCGGAGGCTCCACGACTCTCTTTTGAGGATCGCAGCGTCCTTGTATTGTAATGTGAAGCTCCCCATGTATTCTTGGTCTTCCGATGCAATACGGGTATAAGTGTATTTCTTTCACTACGATTCTGTTTTGTTAATCATTGTGTCGAATCACTGACCGACCGGACGAGGTGTTTTC----TCTATGACGCAGGTACCAACACTTGGGACCGATTTGAACTGCGAGTTCACAAGCGGGTGATTGATTTGCATAGTTCCTCGGAGGTGGTGAAGCAAATTACGTCTATCACAAT ; END; BEGIN MRBAYES; Prset statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); Lset nst = 2 rates = gamma; log start filename = L568.log replace; mcmcp ngen = 10000000 printfreq = 1000 samplefreq = 100 nchains = 4 savebrlens = yes filename = L568Bayes; mcmc; log stop; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 810; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 810; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 810; END; BEGIN TREES; Title L568tree; ID 0174bf5fc2ca35; LINK Taxa = Taxa; TRANSLATE [0] 1 Osmunda_regalis_R10, [1] 2 Osmunda_japonica_J2J3J4J5J6J7J8, [2] 3 Osmunda_regalis_R15R17, [3] 4 Osmunda_lancea_L1a, [4] 5 Osmunda_lancea_L1b, [5] 6 Osmunda_regalis_R5R6R7, [6] 7 Osmunda_japonica_J1a, [7] 8 Osmunda_japonica_J1b, [8] 9 Osmunda_lancea_L2L3, [9] 10 Osmunda_regalis_R13a, [10] 11 Osmunda_regalis_R13b, [11] 12 Osmunda_regalis_R1, [12] 13 Osmunda_regalis_R2, [13] 14 Osmunda_regalis_R3, [14] 15 Osmunda_regalis_R11R12, [15] 16 Plenasium_banksiifolium, [16] 17 Osmunda_regalis_R4, [17] 18 Osmunda_regalis_R8R9, [18] 19 Claytosmunda_claytoniana_CL2, [19] 20 Osmunda_regalis_R18; TREE con_50_majrule = (19:0.01165,(16:0.088454,(((1:0.010029,3:0.001252,11:0.002478):0.007829,(15:0.00871,(10:0.001245,20:0.002454)1.00:0.003736)0.98:0.005118)1.00:0.005991,(((2:0.001918,8:0.001435)1.00:0.00568,(9:0.00251,(4:0.001253,5:0.002483)1.00:0.003737)0.99:0.002553)0.94:0.002536,((6:0.001241,18:0.001243)1.00:0.005067,(7:0.001441,12:0.002479,13:0.002328,14:0.001306,17:0.00125)1.00:0.004902)0.91:0.002497)1.00:0.016895)0.91:0.027405)1.00:0.01165)[% ] [% ] [% setBetweenBits = selected ]; TREE con_50_majrule = (1:0.010029,3:0.001252,11:0.002478,(((((2:0.001918,8:0.001435):0.00568,((4:0.001253,5:0.002483):0.003737,9:0.00251):0.002553):0.002536,((6:0.001241,18:0.001243):0.005067,(7:0.001441,12:0.002479,13:0.002328,14:0.001306,17:0.00125):0.004902):0.002497):0.016895,(16:0.088454,19:0.0233):0.027405):0.005991,((10:0.001245,20:0.002454):0.003736,15:0.00871):0.005118):0.007829); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1600938736823; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4973465049187229738; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6522221669836003277; mqVersion 361; checksumv 0 3 2142400516 null getNumChars 810 numChars 810 getNumTaxa 20 numTaxa 20 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 418270.0 sumSquares -6.9175290276409754E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 296; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1426 1018; setLocation 1134 61; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6522221669836003277 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -72; setLocation 1134 61; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;