#NEXUS [written Thu Sep 24 18:05:52 JST 2020 by Mesquite version 3.61 (build 927) at tsutsumichie-no-iMac.local/202.220.64.189] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=23; TAXLABELS Osmunda_regalis_R10 Osmunda_japonica_J1aJ5J6J7J8 Osmunda_japonica_J3J4 Osmunda_japonica_J2a Osmunda_japonica_J2b Osmunda_regalis_R15 Osmunda_regalis_R14aR16a Osmunda_regalis_R14b Osmunda_lancea_L1a Osmunda_regalis_R5R6R7R8R9 Osmunda_japonica_J1b Osmunda_lancea_L3 Osmunda_regalis_R13a Osmunda_regalis_R13b Osmunda_lancea_L1bL2 Osmunda_regalis_R1R2R3 Osmunda_regalis_R11R12 Osmunda_regalis_R17R18 Osmunda_regalis_R16b Plenasium_banksiifolium_A Plenasium_banksiifolium_B Osmunda_regalis_R4 Claytosmunda_claytoniana_CL2 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=712; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Osmunda_regalis_R10 AACAGGTCTCCTCCTCCT---------------------CCTCTTTTGGGTTTTTCAGCTTTCTTTGCTATGCATCCTCTTTTGGGGTTTTCA---------GCTATGTATACTCCGTCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGAGACTCGTT----AGTTTGATCACAGGCATCGCAATCGTGAA-------GCTCGCCAGACGGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCGCTGTTTCTCAATTTCACCCTCGGCTTCACCCTACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACCTATAA-CAATCGCAGAGTTTGCGGATCTAACTTGGGACGAGTTCAAGGGAACGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCCCTTGTTGTCAGCGATTC-------AGCTTTGCTCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCATAGATGGACGACTGGAGAAGT Osmunda_japonica_J1aJ5J6J7J8 AACAGGTCTCCTCCTCCT---------------------CCTGTTTTGGGTTTTTCAGCTTTCTTTGCTGTGCATCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGCCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGGGACTCGTTAATTAGTTTGATCACACGCATCGCAATCGTGAATCGTGAAGCTCGCCAGACCGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTGGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCACTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTCCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTCGCGGATCTAACCTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAACTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGGGTAAGT Osmunda_japonica_J3J4 AACAGGTCTCCTCCTC-TCCTCCTCCTCCT------CCTCCTGTTTTGGGTTTTTCAGTTTTCTTTGCTATGCATCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGGGACTCGTTAATTAGTTTGATCACACGCATCGCAATCGTGAATCGTGAAGCTCGCCAGACCGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCACTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTCCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTCGCGGATCTAACCTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAACTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGGGTAAGT Osmunda_japonica_J2a AACAGGTCTCCTCCTCCT---------------------CCTGTTTTGGGTTTTTCAGCTTTCTTTGCTGTGCATCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGCCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGGGACTCGTTAATTAGTTTGATCACACGCATCGCAATCGTGAATCGTGAAGCTCGCCAGACCGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTgGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCACTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTCCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTCGCGGATCTAACCTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAACTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGGGTAAGT Osmunda_japonica_J2b AACAGGTCTCCTCCTCCT---------------------CCTGTTTTGGGTTTTTCAGCTTTCTTTGCTGTGCATCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGCCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGGGACTCGTTAATTAGTTTGATCACACGCATCGCAATCGTGAATCGTGAAGCTCGCCAGACCGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTaGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCACTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTCCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTCGCGGATCTAACCTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAACTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGGGTAAGT Osmunda_regalis_R15 AACAGGTCTCCTCCTCCTCCTCCTCCTCTT---------CCTGTTTTGGGTTTTTCAGCTTTCTTTGCTATGCGTCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTTTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGAGCCTCGTT----AGTTTGATCATACGCATCGCAATCGTGAA-------GCTCGCCAGACAGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTTGCAGAGCTGCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCGCTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTTGCGGATCTAACTTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGTAGAAGT Osmunda_regalis_R14aR16a AACAGGTCTCCTCCTCCTCCTCCTCCTCTT---------CCTGTTTTGGGTTTTTCAGCTTTCTTTGCTATGCGTCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTTTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGAGCCTCGTT----AGTTTGATCAcACGCATCGCAATCGTGAA-------GCTCGCCAGACAGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTcGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCGCTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTTGCGGATCTAACTTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGTAGAAGT Osmunda_regalis_R14b AACAGGTCTCCTCCTCCTCCTCCTCCTCTT---------CCTGTTTTGGGTTTTTCAGCTTTCTTTGCTATGCGTCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTTTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGAGCCTCGTT----AGTTTGATCAtACGCATCGCAATCGTGAA-------GCTCGCCAGACAGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTtGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCGCTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTTGCGGATCTAACTTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGTAGAAGT Osmunda_lancea_L1a AACAGGTCTCCTCCTC-TCCTCCTCCTCCT------CCTCCTGTTTTGGGTTTTTCAGTTTTCTTTGCTATGCATCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGGGACTCGTTAATTAGTTTGATCACACGCATCGCAATCGTGAATCGTGAAGCTCGCCAGACCGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCACTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCATTTTTTTCTGTTTCTGCAGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTCGCGGATCTAACCTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAACTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACTTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGGGTAAGT Osmunda_regalis_R5R6R7R8R9 AACAGGTCTCCTCCTCCT---------------------CCTCTTTTGGGTTTTTCAGCTTTCTTTGCTATGCATCCTCTTTTGGGGTTTTCA---------GCTATGTATACTCCGTCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGAGACTCGTT----AGTTTGATCACACGCATCGCAATCGTGAA-------GCTCGCGAGACGGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCGCTGTTTCTCAATTTCACCCTCCGCTTCACCCTACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACCTATAA-CAATCGCAGAGTTTGCGGATCTAACTTGGGACGAGTTCAAGGGAACGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCCCTTGTTGTCAGCGATTC-------AGCTTTGCTCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCATAGATGGACGACTGGAGAAGT Osmunda_japonica_J1b AACAGGTCTCCTCCTCCT---------------------CCTGTTTTGGGTTTTTCAGtTTTCTTTGCTGTGCATCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGtCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGGGACTCGTTAATTAGTTTGATCACACGCATCGCAATCGTGAATCGTGAAGCTCGCCAGACCGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTcGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCACTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTCCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTCGCGGATCTAACCTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAACTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGGGTAAGT Osmunda_lancea_L3 AACAGGTCTCCTCCTC-TCCTCCTCCTCCT---------CCTGTCTTGGGTTTTTCAGCTTTCTTTGCTATGCATCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGGGACTCGTTAATTAGTTTGATCACACGCATCGCAATCGTGAATCGTGAAGCTCGCCAGACCGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTAGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCACTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTCGCGGATCTAACCTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAACTGCTCGGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGGGTAAGT Osmunda_regalis_R13a AACAGGTCTCCTCCTCCTCCTCCTCCTCCT---------CCTGTTTTGGGTTTTTCAGCTTTCTTTGCTATGCATCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTCTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAATTGAGATCGAGACTCGTT----AGTTTGATCACACGCATCGCAATCGTGAA-------GCTCGCCAGACAGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTTGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCGCTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTTGCGGATCTAACTTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGTAGAAGT Osmunda_regalis_R13b AACAGGTCTCCTCCTCCTCCTCCTCCTCCT---------CCTGTTTTGGGTTTTTCAGCTTTCTTTGCTATGCATC-TCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTCTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAATTGAGATCGAGACTCGTT----AGTTTGATCACACGCATCGCAATCGTGAA-------GCTCGCCAGACAGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCGCTGTTTCTCAATTTCACCCT------------ACGCAGCTAGCA-TTTTTCCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTTGCGGATCTAACTTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTGAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGTAGAAGT Osmunda_lancea_L1bL2 AACAGGTCTCCTCCTC-TCCTCCTCCTCCT---------CCTGTCTTGGGTTTTTCAGCTTTCTTTGCTATGCATCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGGGACTCGTTAATTAGTTTGATCACACGCATCGCAATCGTGAATCGTGAAGCTCGCCAGACCGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGCTGAAAGCGTAGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCACTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTCGCGGATCTAACCTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAACTGCTCGGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGGGTAAGT Osmunda_regalis_R1R2R3 AACAGGTCTCCTCCTC------------------------CTCTTTTGGGGTTTTCAGCTTTCTTTGCTATGCATCCTCTTTTGGGGTTTTCA---------GCTATGTATACTCCGTCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGAGACTCGTT----AGTTTGATCACACGCATCGCAATCGTGAA-------GCTCGCCAGACGGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATAGTCTTGGTCTCAATCGTGAGTATCTCTGTTTCTCAATTTCACCCTCCGCTTCACCCTACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACCTGTAA-CAATCGCAGAGTTTGCGGATCTCACTTGGGACGAGTTCAAGGGAACGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCCCTTGTTGTCAGCGATTC-------AGCTTTGCTCGCTTTGATCTGCGATTGTGCTTGTGCGAAGTTCATAGATGGACGACTGGAGAAGT Osmunda_regalis_R11R12 AACAGGTCTCCTCCTCCT---------------------CCTCTTTTGGGTTTTTCAGCTTTCTTTGCTATGCATCCTCTTTTGGGGTTTTCA---------GCTATGTATACTCCGTCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGAGACTCGTT----AGTTTGATCACACGCATCGCAATCGTGAA-------GCTCGCCGGACGGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCGCTGTTTCTCAATTTCACCCTCCGCTTCACCCTACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTACGTTGAAAGCACCTATAA-CAATCGCAGAGTTTGCGGATCTAACTTGGGACGAGTTCAAGGGAACGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCCCTTGTTGTCAGCGATTC-------AGCTTTGCTCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCATAGATGGACGACTGGAGAAGT Osmunda_regalis_R17R18 AACAGGTCTCCTCCTCCTCCTCCTCCTCCT---------CCTGTTTTGGGTTTTTCAGCTTTCTTTGCTATGCATCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTCTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAATTGAGATCGAGACTCGTT----AGTTTGATCACACGCATCGCAATCGTGAA-------GCTCGCCAGACAGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCGCTGTTTCTCAATTTCACCCT------------ACGCAGCTAGCA-TTTTTCCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTTGCGGATCTAACTTGGTACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGTAGAAGT Osmunda_regalis_R16b AACAGGTCTCCTCCTCCTCCTCCTCCTCCT---------CCTGTTTTGGGTTTTTCAGCTTTCTTTGCTATGCATCCTCTTTTGGGTTTTTCA---------GCTATGTATACTCCGTCTCTCTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAATTGAGATCGAGACTCGTT----AGTTTGACCACACGCATCGCAATCGTGAA-------GCTCGCCAGACAGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCGCTGTTTCTCAATTTCACCCT------------ACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTAA-CAATCGCAGAGTTTGCGGATCTAACTTGGGACGAGTTCAAGGGAGCGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTCTGGTCAGCGATTC-------AGCTTTGCCCGCTTTGATCTGCGATTGTGCT-GTGCGAAGTTCAGAGATGGACGACTGTAGAAGT Plenasium_banksiifolium_A AACAGGTCTCCTCCTCCTTCTCCT---------------TCTCTTTTGGGCGTTTCAGCTTTCTTTGCCATGTATCCTCTTTTGGGTTTTTCAGCTTTCTTTGCTACGTATCCTCTGTCTCTGTGTCCGTCAGATCTGGTAGCAAGATCTGTCATATCCAATTGAGGCTCGTT----AGTTTGATCACACGCATCGCAATCGTGAA-------TCTCGCCAGACGGTTCTAACAGGCCTTGTTCCTCAGATATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCAACATCGATTTTCTGCGTTTGTAGAAAGCGTGGAGCTCaTTGAATCCACCAACCGGAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTGTCTCTGTGTCTC-ATTTCACGCT------------ATGCAGCAGGCA-TTTTTC-TGTTTC------------ACTGCGTTGAAAGCCCTTGTATGCAATCGCAGAGTTTGCGGATCTAACCTGGGACGAGTTCAAGGGAACGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCTTCTTGT-GTCAGCGATTCACGATTCAGCTTTGCTCGCTT-GATCTGTGATTCTGCT-GTGCGAAGTTCAGAGATGGACGACTGAAGAAGC Plenasium_banksiifolium_B AACAGGTCTCCTCCTCCTTCTCCT---------------TCTCTTTTGGGCGTTTCAGCTTTCTTTGCCATGTATCCTCTTTTGGGTTTTTCAGCTTTCTTTGCTACGTATCCTCTGTCTCTGTGTCCGTCAGATCTGGTAGCAAGATCTGTCATATCCAATTGAGGCTCGTT----AGTTTGATCACACGCATCGCAATCGTGAA-------TCTCGCCAGACGGTTCTAACAGGCCTTGTTCCTCAGATATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCAACATCGATTTTCTGCGTTTGTAGAAAGCGTGGAGCTCgTTGAATCCACCAACCGGAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTGTCTCTGTGTCTC-ATTTCACGCT------------ATGCAGCAGGCA-TTTTTC-TGTTTC------------ACTGCGTTGAAAGCCCTTGTATGCAATCGCAGAGTTTGCGGATCTAACCTGGGACGAGTTCAAGGGAACGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCTTCTTGT-GTCAGCGATTCACGATTCAGCTTTGCTCGCTT-GATCTGTGATTCTGCT-GTGCGAAGTTCAGAGATGGACGACTGAAGAAGC Osmunda_regalis_R4 AACAGGTCTCCTCCTCCT---------------------CCTCTTTTGGGTTTTTCAGCTTTCTTTGCTATGCATCCTCTTTTGGGGTTTTCA---------GCTATGTATACTCCGTCTCTGTGTCGGTCAGATCTGGTAGGAAGAGCTGCCAAATGAGATCGAGACTCGTT----AGTTTGATCACACGCATCGCAATCGTGAA-------GCTCGCCAGACGGCTCTAACAGGTCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCTGCGTTTGTTGAAAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATAGTCTTGGTCTCAATCGTGAGTATCTCTGTTTCTCAATTTCACCCTCCGCTTCACCCTACGCAGCAAGCA-TTTTTTCTGTTTCTGCGGTTGTTTCTTTGCGTTGAAAGCACCTGTAA-CAATCGCAGAGTTTGCGGATCTCACTTGGGACGAGTTCAAGGGAACGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACTAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCCCTTGTTGTCAGCGATTC-------AGCTTTGCTCGCTTTGATCTGCGATTGTGCTTGTGCGAAGTTCATAGATGGACGACTGGAGAAGT Claytosmunda_claytoniana_CL2 AACAGGTCTCCTCCCCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTTTGGGCTTTCCAGCTTTCTTTGCTATGTATCCTCTTTTGGGTTTTTCAGCTTTCTTTGCTATGTATCCTCTGTCTCTTTGTCGGTCAGATCTGGTAGCAAGAGCTGTCTAATGAGATCGAGGCTCGTT----AGTTTGATCACACGCATCGCAATCGTGAA-------GCTCGCCAGATCGTTCTAACAGGCCTTGTTCCTCAGGTATCGGAAGCAGTACAGCACCGTCGCAGAGCTTCACCATCGATTTTCCGCGTTTGTTGATAGCGTGGAGCTCATTGAATCCACCAACCGCAAGAAGCTTACCTATACTCTTGGTCTCAATCGTGAGTATCGCTGTTTCTCAATTTCACCCT------------ATGCAGCAGGCA-TTTTTTCTGTCTCTGCGGTTGTTTCTTTGCGTTGAAAGCACTTGTATGCAATCGCAGAGTTTGCGGATCTAACTTGGGACGAGTTCAAGGGAACGTACTTGAGATCTTCCCAGCAGAATTGCTCAGCGACCAAAGGCACCCACAAACTCAGAAACATGGCTGTTCCGACCCAGGTTGGACCTCTTTCCTCGCCTCCTCTTGTGGTCAGCGATTC-------AGCTTTGCTCGCTTTGATCTGCGATTCTGCT-GTGCGAAGTTCAGAGATGGACGTCTGATGAAGC ; END; BEGIN MRBAYES; Prset statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); Lset nst = 2 rates = gamma; log start filename = L519.log replace; mcmcp ngen = 10000000 printfreq = 1000 samplefreq = 100 nchains = 4 savebrlens = yes filename = L519; mcmc; log stop; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 712; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 712; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 712; END; BEGIN TREES; Title L519tree; ID 0174bf58e01731; LINK Taxa = Taxa; TRANSLATE [0] 1 Osmunda_regalis_R10, [1] 2 Osmunda_japonica_J1aJ5J6J7J8, [2] 3 Osmunda_japonica_J3J4, [3] 4 Osmunda_japonica_J2a, [4] 5 Osmunda_japonica_J2b, [5] 6 Osmunda_regalis_R15, [6] 7 Osmunda_regalis_R14aR16a, [7] 8 Osmunda_regalis_R14b, [8] 9 Osmunda_lancea_L1a, [9] 10 Osmunda_regalis_R5R6R7R8R9, [10] 11 Osmunda_japonica_J1b, [11] 12 Osmunda_lancea_L3, [12] 13 Osmunda_regalis_R13a, [13] 14 Osmunda_regalis_R13b, [14] 15 Osmunda_lancea_L1bL2, [15] 16 Osmunda_regalis_R1R2R3, [16] 17 Osmunda_regalis_R11R12, [17] 18 Osmunda_regalis_R17R18, [18] 19 Osmunda_regalis_R16b, [19] 20 Plenasium_banksiifolium_A, [20] 21 Plenasium_banksiifolium_B, [21] 22 Osmunda_regalis_R4, [22] 23 Claytosmunda_claytoniana_CL2; TREE con_50_majrule = (23:0.011295,((20:0.001755,21:0.003314)1.00:0.058672,(((16:0.003366,22:0.001657)1.00:0.007169,(1:0.005002,10:0.003348,17:0.004987):0.003286)0.81:0.011553,(((7:0.001717,(6:0.003367,8:0.001686)1.00:0.005002)1.00:0.008026,(13:0.003326,19:0.003348,(14:0.003352,18:0.003381)1.00:0.005052)0.97:0.004178)0.98:0.005658,((12:0.001646,15:0.003279)1.00:0.006997,(9:0.005181,(3:0.001747,(11:0.001854,(2:0.003362,4:0.001674,5:0.003305)0.99:0.005009)0.91:0.003412)0.88:0.003333)0.77:0.00327)1.00:0.015623)1.00:0.009617)1.00:0.029197)1.00:0.011295)[% ] [% ] [% setBetweenBits = selected ]; TREE con_50_majrule = (1:0.005002,10:0.003348,17:0.004987,((((((((2:0.003362,4:0.001674,5:0.003305):0.005009,11:0.001854):0.003412,3:0.001747):0.003333,9:0.005181):0.00327,(12:0.001646,15:0.003279):0.006997):0.015623,(((6:0.003367,8:0.001686):0.005002,7:0.001717):0.008026,(13:0.003326,(14:0.003352,18:0.003381):0.005052,19:0.003348):0.004178):0.005658):0.009617,((20:0.001755,21:0.003314):0.058672,23:0.02259):0.029197):0.011553,(16:0.003366,22:0.001657):0.007169):0.003286); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1600938352096; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 754947554786870871; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6489420274482041083; mqVersion 361; checksumv 0 3 507236240 null getNumChars 712 numChars 712 getNumTaxa 23 numTaxa 23 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 370999.0 sumSquares 307682.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 296; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1427 1216; setLocation 1005 40; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6489420274482041083 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -72; setLocation 1005 40; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;