#NEXUS [written Thu Sep 24 18:09:08 JST 2020 by Mesquite version 3.61 (build 927) at tsutsumichie-no-iMac.local/202.220.64.189] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=16; TAXLABELS Osmunda_regalis_R10 Osmunda_japonica_J1aJ2J3J4J5J6J7J8 Osmunda_japonica_J1b Osmunda_regalis_R15 Osmunda_lancea_L1b Osmunda_lancea_L1aL2L3 Osmunda_regalis_R5R6R7R8R9 Osmunda_regalis_R14R17R18 Osmunda_regalis_R13a Osmunda_regalis_R13b Osmunda_regalis_R1b Osmunda_regalis_R1aR2R3R4 Osmunda_regalis_R11R12 Plenasium_banksiifolium Claytosmunda_claytoniana_CL1 Claytosmunda_claytoniana_CL2 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=606; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Osmunda_regalis_R10 ATTCAATTTACAATGTTTAATCT-----TGTGATGCTGATTTCTAATATGAAAAAGTCCCGACCACATGTGACCATTAAAGACCCTAGCTGCAGTTTACCACTTACGCTTAGGTTGACAATGAGGTGCATAGTAGGTCTGCTATTCATGCAACAAGACTGCTTTGATAGCCGATCGACACCCTGCTAAAATTCTAAGTAAGGGGCTG-------ACATGATTTGTGAAGTGTCATTGCTGTTTTTCTTTACGTGTTTCAGAAACTTGCGGCAGCAATCCACTACATTACTAT--CATGGACTAGTCTCTAGTTACTGGAATCACATCTATTACGAGTCATAACCTCTCTGTGGTGACCTGCTTTTAAGGAAAATAAACAGCAGGGGCTTTTAAATAATGATTTTAACTTTGAAATTGTGTTTGCACTACGTATTGACTTCATGAATTTTGCAGTGCAAAGTGTGTATGCAGACATTCATGTGTACCACAAGTGAAGTAAAGTGTCGGGAACATGCAGAGGCAAAGCACCCCAAAAATGATGTCAGTCAATGTTTTCCTCATATTCAGAAGTAGCATCAACAGTTATGTACTCTCCTGACTCTCTGC Osmunda_japonica_J1aJ2J3J4J5J6J7J8 ATTCAATTTACAATGTTTAATCT-----TGTGATGCTGATTTCTAATATGAAAAAGTCCCGACCACATGTGACCATTAAAGACCCTAGCTGCAGTTTACCACTTATGCTTAGGTTGACAATGAGGTGCATAGTAGGTCTGCTATTCATGCAACAAGACTGCTTTGATAGCTGATCGAAACCCTGCTAAAATTCTAAGTAAGGGGCTG-------ACATGATTTGTGAAGTGTCATCGCTGTTTTTCTTTACGTGTTTCAGAAACTTGCGGCAGCAATCCACTACATTACTAT--CATGGACTAGTCTCTAGTTACTGGAATCACATCTATTACGA-------CCTCTCTGTGGTGACCTGCTTTTAAGGAAAATAAACAGCAGGGGCTTTTAAATAATGATTTTAACTTTGAAATTGTGTTTGCACTACGTATTGACTTCATGAATTTTGCAGTGCAAAGTGTGTATGCAGACATTCATGTGTACCACAAGTGAAGTAAAGTGTCGGGAACATGCAGAGGCAAAGCACCCCAAAAATGATGTCAGTCAATGTTTTCCTCATATTCAGAAGTAGCATCAACAGTTATGTACTCTCCTGACTCTCTGC Osmunda_japonica_J1b ATTCAATTTACAATGTTTAATCT-----TGTGATGCTGATTTCTAATATGAAAAAGTCCCGACCACATGTGACCATTAAAGACCCTAGCTGCAGTTTACCACTTATGCTTAGGTTGACAATGAGGTGCATAGTAGGTCTGCTATTCATGCAACAAGACTGtTTTGATAGCTGATCGAAACCCTGCTAAAATTCTAAGTAAGGGGCTG-------ACATGATTTGTGAAGTGTCATCGCTGTTTTTCTTTACGTGTTTCAGAAACTTGCGGCAGCAATCCACTACATTACTAT--CATGGACTAGTCTCTAGTTACTGGAATCACATCTATTACGA-------CCTCTCTGTGGTGACCTGCTTTTAAGGAAAATAAACAGCAGGGGCTTTTAAATAATGATTTTAACTTTGAAATTGTGTTTGCACTACGTATTGACTTCATGAATTTTGCAGTGCAAAGTGTGTATGCAGACATTCATGTGTACCACAAGTGAAGTAAAGTGTCGGGAACATGCAGAGGCAAAGCACCCCAAAAATGATGTCAGTCAATGTTTTCCTCATATTCAGAAGTAGCATCAACAGTTATGTACTCTCCTGACTCTCTGC Osmunda_regalis_R15 ATTCAATTTACAATGTTTAATCT-----TGTGATGCTGATTTCTAATATGAAAAAGTCCCGACCACATTTGACCATTAAAGACCCTAGCTGCAGTTTACCACTTATGCTTAGGTTGACAATGAGGTGCATAGTAGGTCTACTATTCATGCAACAAGACTGCTTTGATAGCCGATCGACACCCTGCTAAAATTCTAAGTAAGGGGCTGTCAGCTGACATGATTTGTGAAGTGTCATTGCCGTTTTTCTTTACGTGTTTCAGAAACTTGCGGCAGCAATCCACTACATTACTAT--CATGGACTAGCCTCTAGTTACTGGAATCACATCTATTACAAGTCACGACCTCTCTGTGGTGACCTGCTTTTAAGGAAAATAAACAGCAGGGGCTTTTAAATAATGATTTTAACTTTGAAATTGTGGTTGCACTACGTATTGACTTCATGAATTTTGCAGTGCAAAGTGTGTATGCAGACATTCATGTGTACCACAAGTGAAGTAAAGTGTCGGGAACATGCAGAGGCAAAGCACCCCAAAAATGATGTCAGTCAATGTTTTCCTCATATTCAGAAGTAGCATCAACAGTTATGTACTCTCCTGACTCTCTGC Osmunda_lancea_L1b ATTCAATTTACAATGTTTAATCT-----TGTGATGCTGTTTTCTAATATGAAAAAGTCCCGACCACATGTGACCATTAAAGACCCTAGCTGCAGTTTACCACTTATGCTTAGGTTGACAATGAGGTGCATAGTAGGTCTGCTATTCATGCAACAAGACTGCTTTGATAGCTGATcGAAACCCTGCTAAAATTCTAAGTAAGGGGCTG-------ACATGATTTGTGAAGTGTCATtGCTGTTTTTCTTTACGTGTTTCAGAAACTTGCGGCAGCAATCCACTACATTACTAT--CATGGACTAGTCTCTAGTTACTGGAATCACAT-TATTACGA-------CCTCTCTGTGGTGACCTGCTTTTAAGGAAAATAAACAGCAGGGGCTTTTAAATAATGATTTTAACTTTGAAATTGTGTTTGCACTACGTATTGACTTCATGAATTTTGCAGTGCAAAGTGTGTATGCAGACATTCATGTGTACCACAAGTGAAGTAAAGTGTCGGGAACATGCAGAGGCAAAGCACCCCAAAAATGATGTCAGTCAATGTTTTCCTCATATTCAGAAGTAGAATCAACAGTTATGTACTCTCCTGACTCTCTGC Osmunda_lancea_L1aL2L3 ATTCAATTTACAATGTTTAATCT-----TGTGATGCTGTTTTCTAATATGAAAAAGTCCCGACCACATGTGACCATTAAAGACCCTAGCTGCAGTTTACCACTTATGCTTAGGTTGACAATGAGGTGCATAGTAGGTCTGCTATTCATGCAACAAGACTGCTTTGATAGCTGATGGAAACCCTGCTAAAATTCTAAGTAAGGGGCTG-------ACATGATTTGTGAAGTGTCATCGCTGTTTTTCTTTACGTGTTTCAGAAACTTGCGGCAGCAATCCACTACATTACTAT--CATGGACTAGTCTCTAGTTACTGGAATCACAT-TATTACGA-------CCTCTCTGTGGTGACCTGCTTTTAAGGAAAATAAACAGCAGGGGCTTTTAAATAATGATTTTAACTTTGAAATTGTGTTTGCACTACGTATTGACTTCATGAATTTTGCAGTGCAAAGTGTGTATGCAGACATTCATGTGTACCACAAGTGAAGTAAAGTGTCGGGAACATGCAGAGGCAAAGCACCCCAAAAATGATGTCAGTCAATGTTTTCCTCATATTCAGAAGTAGAATCAACAGTTATGTACTCTCCTGACTCTCTGC Osmunda_regalis_R5R6R7R8R9 ATTCAATTTACAATGTTTAATCT-----TGTGATGCTGATTTCTAATATGAAAAAGTCCCGACCACATGTGACCATTAAAGACCCTAGCCGCAGTTTACCACTTATGCTTAGGTTGACAATGAGGTGCATAGTAGGTCTGCTATTCATGCAACAAGACTGCTTTGATAGCCGATCGACACCCTGCTAAAATTCTAAGTAAGGGGCTG-------ACATGATTTGTGAAGTGTCATTGCTGTTTTTCTTTACGTGTTTCAGAAACTTGCGGCAGCAATCCACTACATTACTAT--CATGGACTAGTCTCTAGTTACTGGAATCACATCTATTACGAGTCACAACCTCTCTGTGGTGACCTGCTTTTAAGGAAAATAAACAGCAGGGGCTTTTAAATAATGATTTTAACTTTGAAATTGTGTTTGCACTACATATTGACTTCATGAATTTTGCAGTGCAAAGTGTGTATGCAGACATTCATGTGTACCACAAGTGAAGTAAAGTGTCGGGAACATGCAGAGGCAAAGCACCCCAAAAATGATGTCAGTCAATGTTTTCCTCATATTCAGAAGTAGCATCAACAGTTATGTACTCTCCTGACTCTCTGC Osmunda_regalis_R14R17R18 ATTCAATTTACAATGTTTAATCT-----TGTGATGCTGATTTCTAATATGAAAAAGTCCCGACCACATTTGACCATTAAAGACCCTAGCTGCAGTTTACCACTTATGCTTAGGTTGACAATGAGGTGCATAGTAGGTCTACTATTCATGCAACAAGACTGCTTTGATAGCCGATCGACACCCTGCTAAAATTCTAAGTAAGGGGCTGTCAGCTGACATGATTTGTGAAGTGTCATTGCCGTTTTTCTTTACGTGTTTCAGAAACTTGCGGCAGCAATCCACTACATTACTAT--CATGGACTAGCCTCTAGTTACTGGAATCACATCTATTACAAGTCACGACCTCTCTGTGGTGACCTGCTTTTAAGGAAAATAAACAGCAGGGGCTTTTAAATAATGATTTTAACTTTGAAATTGTGTTTGCACTACGTATTGACTTCATGAATTTTGCAGTGCAAAGTGTGTATGCAGACATTCATGTGTACCACAAGTGAAGTAAAGTGTCGGGAACATGCAGAGGCAAAGCACCCCAAAAATGATGTCAGTCAATGTTTTCCTCATATTCAGAAGTAGCATCAACAGTTATGTACTCTCCTGACTCTCTGC Osmunda_regalis_R13a ATTCA-TTTACAATGTTTAATCT-----TGTGATGCTGATTTCTAATATGAAAAAGTCCCGACCACATTTGACCATTAAAGACCCTAGCTGCAGTTTACCACTTATGCTTAGGTTGACAATGAGGTGCATAGTAGGTCTACTATTCATGCAACAAGACTGCTTTGATAGCCGATCGACACCCTGCTAAAATTCTAAGTAAGGGGCTG?CAGCTGACATGATTTGTGAAGTGTCATTGCtGTTTTTCTTTACGTGTTTCAGAAACTTGCGGCAGCAATCCACTACATTACTAT--CATGGACTAGtCTCTAGTTACTGGAATCACATCTATTACAAGTCACGACCTCTCTGTGGTGACCTGCTTTTAAGGAAAATAAACAGCAGGGGCTTTTAAATAATGATTTTAACTTTGAAATTGTGTTTGCACTACGTATTGACTTCATGAATTTTGCAGTGCAAAGTGTGTATGCAGACATTCATGTGTACCACAAGTGAAGTAAAGTGTCGGGAACATGCAGAGGCAAAGCACCCCAAAAATGATGTCAGTCAATGTTTTCCTCATATTCAGAAGTAGCATCAACAGTTATGTACTCTCCTGACTCTCTGC Osmunda_regalis_R13b ATTCA-TTTACAATGTTTAATCT-----TGTGATGCTGATTTCTAATATGAAAAAGTCCCGACCACATTTGACCATTAAAGACCCTAGCTGCAGTTTACCACTTATGCTTAGGTTGACAATGAGGTGCATAGTAGGTCTACTATTCATGCAACAAGACTGCTTTGATAGCCGATCGACACCCTGCTAAAATTCTAAGTAAGGGGCTG?CAGCTGACATGATTTGTGAAGTGTCATTGCcGTTTTTCTTTACGTGTTTCAGAAACTTGCGGCAGCAATCCACTACATTACTAT--CATGGACTAGcCTCTAGTTACTGGAATCACATCTATTACAAGTCACGACCTCTCTGTGGTGACCTGCTTTTAAGGAAAATAAACAGCAGGGGCTTTTAAATAATGATTTTAACTTTGAAATTGTGTTTGCACTACGTATTGACTTCATGAATTTTGCAGTGCAAAGTGTGTATGCAGACATTCATGTGTACCACAAGTGAAGTAAAGTGTCGGGAACATGCAGAGGCAAAGCACCCCAAAAATGATGTCAGTCAATGTTTTCCTCATATTCAGAAGTAGCATCAACAGTTATGTACTCTCCTGACTCTCTGC Osmunda_regalis_R1b ATTCAATTTACAATGTTTAATCT-----TGTGATGCTGATTTCTAATATGAAAAAGTCCCGACCACATGTGACCATTAAAGACACTAGCTGCAGTTTACCACTTATGCTTAGGTTGACAATGAGGTGCATAGTAGGTCTGCTATTCATGCAACAAGACTGCTTTGATAGCCGATCGACACCCTgCTAAAATTCTAAGTAAGGGGCTG-------ACATGATTTGTGAAGTGTCATTGCTGTTTTTCTTTACGTGTTTCAGAAACTTGCGGCAGCAATCCACTACATTACTAT--CATGGACTAGTCTCTAGTTACTGGAATCACATCTATTACGAGTCACAACCTCTCTGTGGTGACCTGCTTTTAAGGAAAATAAACAGCAGGGGCTTTTAAATAATGATTTTAACTTTGAAATTGTGTTTGCACTACGTATTGACTTCATGAATTTTGCAGTGCAAAGTGTGTATGCAGACATTCATGTGTACCACAAGTGAAGTAAAGTGTCGGGAACATGCAGAGGCAAAGCACCCCAAAAATGATGTCAGTCAATGTTTTCCTCATATTCAGAAGTAGCATCAACAGTTATGTACTCTCCTGACTCTCTGC Osmunda_regalis_R1aR2R3R4 ATTCAATTTACAATGTTTAATCT-----TGTGATGCTGATTTCTAATATGAAAAAGTCCCGACCACATGTGACCATTAAAGACACTAGCTGCAGTTTACCACTTATGCTTAGGTTGACAATGAGGTGCATAGTAGGTCTGCTATTCATGCAACAAGACTGCTTTGATAGCCGATCGACACCCTTCTAAAATTCTAAGTAAGGGGCTG-------ACATGATTTGTGAAGTGTCATTGCTGTTTTTCTTTACGTGTTTCAGAAACTTGCGGCAGCAATCCACTACATTACTAT--CATGGACTAGTCTCTAGTTACTGGAATCACATCTATTACGAGTCACAACCTCTCTGTGGTGACCTGCTTTTAAGGAAAATAAACAGCAGGGGCTTTTAAATAATGATTTTAACTTTGAAATTGTGTTTGCACTACGTATTGACTTCATGAATTTTGCAGTGCAAAGTGTGTATGCAGACATTCATGTGTACCACAAGTGAAGTAAAGTGTCGGGAACATGCAGAGGCAAAGCACCCCAAAAATGATGTCAGTCAATGTTTTCCTCATATTCAGAAGTAGCATCAACAGTTATGTACTCTCCTGACTCTCTGC Osmunda_regalis_R11R12 ATTCAATTTACAATGTTTAATCT-----TGTGATGCTGATTTCTAATATGAAAAAGTCCCGACCACATGTGACCATTAAAGACCCTAGCTGCAGTTTACCACTTATGCTTAGGTTGACAATGAGGTGCATAGTAGGTCTGCTATTCATGCAACAAGACTGCTTTGATAGCCGATCGACACCCTGCTAAAATTCTAAGTAAGGGGCTG-------ACATGATTTGTGAAGTGTCATTGCTGTTTTTCTTTACGTGTTTCAGAAACTTGCAGCAGCAATCCACTACATTACTAT--CATGGACTAGTCTCTAGTTACTGGAATCACATCTATTACGAGTCACAACCTCTCTGTGGTGACCTGCTTTTAAGGAAAATAAACAGCAGGGGCTTTTAAATAATGATTTTAACTTTGAAATCGTGTTTGCACTACGTATTGACTTCATGAATTTTGCAGTGCAAAGTGTGTATGCAGACATTCATGTGTACCACAAGTGAAGTAAAGTGTCGGGAACATGCAGAGGCAAAGCACCCCAAAAATGATGTCAGTCAATGTTTTCCTCATATTCAGAAGTAGCATCAACAGTTATGTACTCTCCTGACTCTCTGC Plenasium_banksiifolium ATTCAGTTTACAATGTTTAATCT-----TGTGATACTGATTTCTAATATGAAAAAGTCCCGACTACATGTGACCATTTAAGATCCTAGCTGCAGTTTACCAGTTATGTTGAGGCTGACAATGAGGATCATAGTAGT-----TTATCATGCAACAGCACTGCTTTGATAACCGATCGACACCCTGCTAAATTTCTAAGTAAAGGGTTG-------ACATGATTTGTGAAGTGTCATTGCTGTTTTTCTTTACGCATTTCAGAAACTTGTGGCAGAAATCCAGTACATTACTATATCATGGACTAGTCTCTCGTTACTGGAATCACATCTGTTACCA-------CCTCTCTATGGTGACCTGCTTTTAGGGAAAATAAACAGCGGGAGCTTTTAAATA----TTTTAACTTTGAAATTGTGTTTGCACTACGTATTGACTTGGTGAATTTTGCAGTGCAAAGTGTGTATGCAGACATTCATGTGTACCACAAGTGAAGTAAAGTGTCGGGAACATGCAGAGGCAAAGCACCCCAAAAATGATGTCAGCCAATGTTTTCCTCATATTCAGAAGTAGCATCAACAGTTATGTACTCTCCTGACTCTCTAC Claytosmunda_claytoniana_CL1 ------------------AATCT-----TGTGATACTGATTTCTAATATGAAAAAGTCCCAACTACATGTGACCATTAAAGACCCTAGCTGCAGTTTACCACTTATGATTAGGTTGACAATGAGTTGCATAGTAGGTCTGCTCTTCATGCAACAAGACTGCTTTGATAACCGATCGACACCCTGCTAAAATTCTAAGTA---------------------TTTGTGAAGTCTCATTGCTGTTTTTCTTTACATGCTTCAGAAACTTGCGGCAGCAGTCCACTACATTACTAT--CATGGACTAGTCTCTAATTATTGGAATCACATCTGTTACGA-------CCTCTCTATGGTGACCTGCTTTTAAGGAAAATAAACAGCAGGGGCTTTTAAATAATGATTTTAACTTTGAAATTGTGTTTGCACTACATATTGACTTCGTGAATTTTGCAGTGCAAAGTGTGTATGCAGACATTCATGTGTACCACAAGTGAAGTAAAGTGTCGGGAACATGCAGAGGCAAAGCACCCCAAAAATGATGTCAGTCAATGTTTTCCTCATATTCAGAAGTAGCATCAACAGTTATGTACTCTCCTGACTCTCTAC Claytosmunda_claytoniana_CL2 ATTCAATTTGCAATGTTTAATCTAATCTTGTGATACTGATTTCTAATATGAAAAAGTCCCAACTACATGTGACCATTAAAGACCCTAGCTGCAGTTTACCACTTATGATTAGGTTGACAATGAGTTGCATAGTAGGTCTGCTCTTCATGCAACAAGACTGCTTTGATAACCGATCGACACCCTGCTAAAATTCTAAGTA---------------------TTTGTGAAGTCTCATTGCTGTTTTTCTTTACATGCTTCAGAAACTTGCGGCAGCAGTCCACTACATTACTAT--CATGGACTAGTCTCTAATTATTGGAATCACATCTGTTACGA-------CCTCTCTATGGTGACCTGCTTTTAAGGAAAATAAACAGCAGGGGCTTTTAAATAATGATTTTAACTTTGAAATTGTGTTTGCACTACATATTGACTTCGTGAATTTTGCAGTGCAAAGTGTGTATGCAGACATTCATGTGTACCACAAGTGAAGTAAAGTGTCGGGAACATGCAGAGGCAAAGCACCCCAAAAATGATGTCAGTCAATGTTTTCCTCATATTCAGAAGTAGCATCAACAGTTATGTACTCTCCTGACTCTCTAC ; END; BEGIN MRBAYES; Prset statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); Lset nst = 2 rates = equal; log start filename = L525.log replace; mcmcp ngen = 10000000 printfreq = 1000 samplefreq = 100 nchains = 4 savebrlens = yes filename = L525Bayes; mcmc; log stop; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 606; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 606; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 606; END; BEGIN TREES; Title L525tree; ID 0174bf5ccec333; LINK Taxa = Taxa; TRANSLATE [0] 1 Osmunda_regalis_R10, [1] 2 Osmunda_japonica_J1aJ2J3J4J5J6J7J8, [2] 3 Osmunda_japonica_J1b, [3] 4 Osmunda_regalis_R15, [4] 5 Osmunda_lancea_L1b, [5] 6 Osmunda_lancea_L1aL2L3, [6] 7 Osmunda_regalis_R5R6R7R8R9, [7] 8 Osmunda_regalis_R14R17R18, [8] 9 Osmunda_regalis_R13a, [9] 10 Osmunda_regalis_R13b, [10] 11 Osmunda_regalis_R1b, [11] 12 Osmunda_regalis_R1aR2R3R4, [12] 13 Osmunda_regalis_R11R12, [13] 14 Plenasium_banksiifolium, [14] 15 Claytosmunda_claytoniana_CL1, [15] 16 Claytosmunda_claytoniana_CL2; TREE con_50_majrule = ((15:0.001785,16:0.001864)1.00:0.010839,(14:0.053083,(1:0.004813,7:0.004845,13:0.00499,(11:0.001683,12:0.003347)0.99:0.003341,(2:0.001677,3:0.003374,(5:0.003165,6:0.003594)1.00:0.005082)1.00:0.006546,(9:0.001676,(4:0.003298,8:0.001646,10:0.001647)1.00:0.004938)1.00:0.008261):0.016109)1.00:0.010839)[% ] [% ] [% setBetweenBits = selected ]; TREE con_50_majrule = (1:0.004813,7:0.004845,13:0.00499,((4:0.003298,8:0.001646,10:0.001647):0.004938,9:0.001676):0.008261,(14:0.053083,(15:0.001785,16:0.001864):0.021678):0.016109,(2:0.001677,3:0.003374,(5:0.003165,6:0.003594):0.005082):0.006546,(11:0.001683,12:0.003347):0.003341); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1600938548097; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6677228468866844856; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8584932928820427412; mqVersion 361; checksumv 0 3 3092480102 null getNumChars 606 numChars 606 getNumTaxa 16 numTaxa 16 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 229345.0 sumSquares 4.6116860184274821E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 296; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1499 1053; setLocation 1061 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8584932928820427412 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -72; setLocation 1061 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;