#NEXUS [written Tue Mar 16 13:25:03 SGT 2021 by Mesquite version 3.61 (build 927) at NoPsechrids.local/10.0.1.151] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=41; TAXLABELS 'Leptonema illini DB52_AY996803_16S' 'Leptospira alexanderi Manzhuang_A23_AY996803_16S.' 'Leptospira bandrabouensis CES_MN062727_16S' 'Leptospira biflexa Patoc_Patoc_1_Paris_CP000786' 'Leptospira borgpetersenii Hardjo.bovis_L550_CP000348' 'Leptospira bourretii CES_MN061027_16S' 'Leptospira bouyouniensis CES_MN061028_16S' 'Leptospira brenneri CES_MK791639_16S' 'Leptospira congkakensis CES_MN061030_16S' 'Leptospira ellinghausenii CES_MN061031_16S' 'Leptospira fainei Hurstbridge_str._BUT_6_NR_043049' 'Leptospira harrisiae CES_MK791640_16S' 'Leptospira idonii Eri.1_NR_114336' 'Leptospira ilyithenensis CES_MN086350_16S' 'Leptospira inadai Lyme_10_NR_115296' 'Leptospira interrogans Lai_str._56601_AE010300' 'Leptospira jelokensis CES_MN062728_16S' 'Leptospira kanakyensis CES_MN061032_16S' 'Leptospira kemamanensis CES_MN062726_16S' 'Leptospira kirschneri CES_MK72612316S' 'Leptospira kirschneri Mozdok_3759_KP125531_16S' 'Leptospira kmetyi CES_MK719980_16S' 'Leptospira kobayashii CES_MN061033_16S' 'Leptospira levettii CES_MK791641_16S' 'Leptospira licerasiae Varillal_EF612287_MMD835_16S' 'Leptospira macculloughii CES_MK791638_16S' 'Leptospira meyeri CES_MN047229_16S' 'Leptospira montravelensis CES_MN062731_16S' 'Leptospira mtsangambouensis CES_MN062733_16S' 'Leptospira noguchii CES_MK726126_16S' 'Leptospira noumeaensis CES_MN062729_16S' 'Leptospira ognonensis CES_MN082575_16S' 'Leptospira perdikensis CES_MN086353_16S' 'Leptospira ryugenii CES_MN086356_16S' 'Leptospira santarosai Georgia_LT_117_AY996805_16S' 'Leptospira terpstrae CES_MN047230_16S' 'Leptospira vanthielii Holland_WaZ_Holland_NR_115297' 'Leptospira weilii Sarmin_U12673' 'Leptospira wolbachii CES_MN047227_16S' 'Leptospira wolffii Khorat_Khorat.H2_NR_044042' 'Leptospira yanagawae CES_MN047228_16S' ; END; BEGIN CHARACTERS; TITLE Leptospira_16S; DIMENSIONS NCHAR=229; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Leptonema illini DB52_AY996803_16S' CGGCGCGTCTTAAACATGCAAGTCGAGCGG--CAGCACTTCGGGTGGCGAGCGGCGAACGGGTGAGTAACACGTAGGTAATTTGCCCACGGATGGGGGATAACCTTTCGAAAGGAAGGCTAATACCGCATAACACCATGG-TTACCA--------CGGTAATTAT-GGTCAAAGCAGCAATGC-GTCTGTGGAGAAGCCTGCGTCCGATTAGGTAGTTGGTGAGGTAA- 'Leptospira alexanderi Manzhuang_A23_AY996803_16S.' CGGCGCGTCTTAAACATGCAAGTCAAGCGGAGTAGCAATAC-----TTAAGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTCCGAGTCTGGGATAACTTTCCGAAAGGGGAGCTAATACTG---GATA-------GTCCCGAGAGGTCATATGATTTTTCGGGTAAAGATTTATTGC---TCGGAGATGAGCCCGCGCCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira bandrabouensis CES_MN062727_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira biflexa Patoc_Patoc_1_Paris_CP000786' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGTAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira borgpetersenii Hardjo.bovis_L550_CP000348' CGGCGCGTCTTAAACATGCAAGTCAAGCGGAGTAGCAATAC-----TC-AGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTCCGAGTCTGGGATAACTTTCCGAAAGGGGAGCTAATACTG---GATA-------GTCCCGAGAGGTCATAGGATTTTTCGGGTAAAGATTTATTGC---TCGGAGATGAGCCCGCGCCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira bourretii CES_MN061027_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAAGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira bouyouniensis CES_MN061028_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira brenneri CES_MK791639_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGATAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira congkakensis CES_MN061030_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira ellinghausenii CES_MN061031_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira fainei Hurstbridge_str._BUT_6_NR_043049' CGGCGCGTCTTAAACATGCAAGTCGAGCGGGGTAGCAATAC------CTAGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTCCGAGTCTGGGATAACTTTCCGAAAGGAAAGCTAATACCG---GATA-------GTCCTGTTGGATCACAAGATTTGATAGGTAAAGATTTATTGC---TTGGAGATGAGCCCGCGGCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira harrisiae CES_MK791640_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGATAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira idonii Eri.1_NR_114336' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTTTAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCAGCAAAG----GCTGGATT---GGTTAAAGCAGCAATGC-GCTTAGAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira ilyithenensis CES_MN086350_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-CTAGCAATAG------C-AGTGGCGAACGGGTGAGTAATACATGGATAATCTACCTAAAAGTTGGGGATAACTCAGAGAAATTTGGGCTAATACCG---AATGTGACGG-TTTGACATAG----GTCAGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTAGGGTAA- 'Leptospira inadai Lyme_10_NR_115296' CGGCGCGTCTTAAACATGCAAGTCGAGCGGGGTAGCAATAC------CTAGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTCCGAGTCTGGGATAACTTTCCGAAAGGAAAGCTAATACCG---GATA-------GTCCTACTGGATCACAGGATCTGATAGGTAAAGATTTATTGC---TTGGAGATGAGCCCGCGGCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira interrogans Lai_str._56601_AE010300' CGGCGCGTCTTAAACATGCAAGTCAAGCGGAGTAGCAATAC-----TC-AGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTCTGAGTCTGGGATAACTTTCCGAAAGGGAAGCTAATACTG---GATG-------GTCCCGAGAGATCATAAGATTTTTCGGGTAAAGATTTATTGC---TCGGAGATGAGCCCGCGTCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira jelokensis CES_MN062728_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira kanakyensis CES_MN061032_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira kemamanensis CES_MN062726_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira kirschneri CES_MK72612316S' CGGCGCGTCTTAAACATGCAAGTCAAGCGGAGTAGCAATAC-----TC-AGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTCCGAGTCTGGGATAACTTTCCGAAAGGGAAGCTAATACTG---GATG-------GTCCCGAGAGATCATAAGATTTTTCGGGTAAAGATTTATTGC---TCGGAGATGAGCCCGCGTCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira kirschneri Mozdok_3759_KP125531_16S' CGGCGCGTCTTAAACATGCAAGTCAAGCGGAGTAGCAATAC------TCAGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTCCGAGTCTGGGATAACTTTCCGAAAGGGAAGCTAATACTG---GATG-------GTCCCGAGAGATCATAAGATTTTTCGGGTAAAGATTTATTGC---TCGGAGATGAGCCCGCGTCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira kmetyi CES_MK719980_16S' CGGCGCGTCTTAAACATGCAAGTCAAGCGGAGTAGCAATAC-----TC-AGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTCCGAGTCTGGGATAACTTTTCGAAAGGAAAGCTAATACTG---GATA-------GTCCCGAGAGATCACAAGGTTTTTCGGGTAAAGATTTATTGC---TCGGAGATGAGCCCGCGTCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira kobayashii CES_MN061033_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-CTAGCAATAG------C-AGTGGCGAACGGGTGAGTAATACATGGATAATCTACCTAAAAGTTGGGGATAACTCAGAGAAATTTGGGCTAATACCG---AATGTGACGG-TTTGACATAG----GTCAGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTAGGGTAA- 'Leptospira levettii CES_MK791641_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira licerasiae Varillal_EF612287_MMD835_16S' ------------------CAAGTCGAGCGGAGTAGCAATAC-----TT-AGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTCCGAATCTGGGATAACTTTCCGAAAGGAAAGCTAATACCG---GATAGTTCTA-TT--GGATCA----CAGGATTT---GATAGATAAAGGTTTACTGTTCGGAGATGAGCCCGCGGCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira macculloughii CES_MK791638_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira meyeri CES_MN047229_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira montravelensis CES_MN062731_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira mtsangambouensis CES_MN062733_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira noguchii CES_MK726126_16S' CGGCGCGTCTTAAACATGCAAGTCAAGCGGAGTAGCAATAC-----TC-AGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTTCGAGTCTGGGATAACTTTCCGAAAGGGAAGCTAATACTG---GATA-------GTCCCGAGAGATCATAAGATTTTTCGGGTAAAGATTCATTGC---TCGGAGATGAGCCCGCGTCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira noumeaensis CES_MN062729_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira ognonensis CES_MN082575_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAATCTACCTAAAAGTTGGGGATAACTCAGAGAAATTTGGGATAATACCG---AATGTGACGG-TTCAGCACAA----GCTGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira perdikensis CES_MN086353_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGATAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira ryugenii CES_MN086356_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAAAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira santarosai Georgia_LT_117_AY996805_16S' CGGCGCGTCTTAAACATGCAAGTCAAGCGGAGTAGCAATAC-----TC-AGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTTCGAGTCTGGGATAACTTTCCGAAAGGGGAGCTAATACTG---GATAGTCCCGATAGATCATAG----GATGTATC---GGGTAAAGATTCATTGC---TCGGAGATGAGCCCGCGTCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira terpstrae CES_MN047230_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAAAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira vanthielii Holland_WaZ_Holland_NR_115297' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGATAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira weilii Sarmin_U12673' CGGCGCGTCTTAAACATGCAAGTCAAGCGGGATAGCAATAT-----CC-AGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTCCGAGTCTGGGATAACTTTCCGAAAGGGGAGCTAATACTG---GATA-------GTCCCGAGAGGTCATATGATTTTTCGGGTAAAGATTTATTGC---TCGGAGCTGAGCCCGCGCCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira wolbachii CES_MN047227_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- 'Leptospira wolffii Khorat_Khorat.H2_NR_044042' CGGCGCGTCTTAAACATGCAAGTCGAGCGGAGTAGCAATAC-----TT-AGCGGCGAACGGGTGAGTAACACGTGGGTAATCTTCCTCCGAATCTGGGATAACTTTCCGAAAGGAAAGCTAATACCG---GATAGTTCTA-TT--GGATCA----CAGGATTT---GATAGATAAAGGTTTACTGTTCGGAGATGAGCCCGCGGCCGATTAGCTAGTTGGTGAGGTAA- 'Leptospira yanagawae CES_MN047228_16S' CGGCGCGTCTTAAACATGCAAGTCAAACGG-GTAGCAATAC------C-AGTGGCGAACGGGTGAGTAATACATGGATAACCTACCTAGAAGTTGGGGATAACACAGAGAAATTTGTGCTAATACCG---AATGTGACGG-TTCCTGGTAG----CAGGGATT---GGTTAAAGCAGCAATGC-GCTTTTAGATGGGTCCATGGCTGATTAGCTAGTTGGTGGGGTAA- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 229; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 229; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 229; END; BEGIN TREES; Title Leptospira; ID 01783979cc3e30; LINK Taxa = Taxa; TRANSLATE [0] 1 'Leptonema illini DB52_AY996803_16S', [1] 2 'Leptospira alexanderi Manzhuang_A23_AY996803_16S.', [2] 3 'Leptospira bandrabouensis CES_MN062727_16S', [3] 4 'Leptospira biflexa Patoc_Patoc_1_Paris_CP000786', [4] 5 'Leptospira borgpetersenii Hardjo.bovis_L550_CP000348', [5] 6 'Leptospira bourretii CES_MN061027_16S', [6] 7 'Leptospira bouyouniensis CES_MN061028_16S', [7] 8 'Leptospira brenneri CES_MK791639_16S', [8] 9 'Leptospira congkakensis CES_MN061030_16S', [9] 10 'Leptospira ellinghausenii CES_MN061031_16S', [10] 11 'Leptospira fainei Hurstbridge_str._BUT_6_NR_043049', [11] 12 'Leptospira harrisiae CES_MK791640_16S', [12] 13 'Leptospira idonii Eri.1_NR_114336', [13] 14 'Leptospira ilyithenensis CES_MN086350_16S', [14] 15 'Leptospira inadai Lyme_10_NR_115296', [15] 16 'Leptospira interrogans Lai_str._56601_AE010300', [16] 17 'Leptospira jelokensis CES_MN062728_16S', [17] 18 'Leptospira kanakyensis CES_MN061032_16S', [18] 19 'Leptospira kemamanensis CES_MN062726_16S', [19] 20 'Leptospira kirschneri CES_MK72612316S', [20] 21 'Leptospira kirschneri Mozdok_3759_KP125531_16S', [21] 22 'Leptospira kmetyi CES_MK719980_16S', [22] 23 'Leptospira kobayashii CES_MN061033_16S', [23] 24 'Leptospira levettii CES_MK791641_16S', [24] 25 'Leptospira licerasiae Varillal_EF612287_MMD835_16S', [25] 26 'Leptospira macculloughii CES_MK791638_16S', [26] 27 'Leptospira meyeri CES_MN047229_16S', [27] 28 'Leptospira montravelensis CES_MN062731_16S', [28] 29 'Leptospira mtsangambouensis CES_MN062733_16S', [29] 30 'Leptospira noguchii CES_MK726126_16S', [30] 31 'Leptospira noumeaensis CES_MN062729_16S', [31] 32 'Leptospira ognonensis CES_MN082575_16S', [32] 33 'Leptospira perdikensis CES_MN086353_16S', [33] 34 'Leptospira ryugenii CES_MN086356_16S', [34] 35 'Leptospira santarosai Georgia_LT_117_AY996805_16S', [35] 36 'Leptospira terpstrae CES_MN047230_16S', [36] 37 'Leptospira vanthielii Holland_WaZ_Holland_NR_115297', [37] 38 'Leptospira weilii Sarmin_U12673', [38] 39 'Leptospira wolbachii CES_MN047227_16S', [39] 40 'Leptospira wolffii Khorat_Khorat.H2_NR_044042', [40] 41 'Leptospira yanagawae CES_MN047228_16S'; TREE Imported_tree_1 = (1:0.147067,(((40:0.0,25:0.0):0.103429,((15:0.021674,11:0.0):0.041266,(22:0.010524,((30:0.010705,(21:0.005916,(20:0.0,16:0.005326):0.0):0.005841):0.0,(35:0.090682,(2:0.006241,(38:0.027438,5:0.005348):0.0):0.006123):0.019609):0.01158):0.042011):0.036845):0.109163,((13:0.029173,(32:0.015469,(23:0.0,14:0.0):0.054815):0.020384):0.04223,((33:0.0,(12:0.0,8:0.0):0.0):0.0,(37:0.0,((36:0.0,34:0.0):0.005377,(6:0.005377,((7:0.0,4:0.005379):0.0,(41:0.0,(39:0.0,(31:0.0,(29:0.0,(28:0.0,(27:0.0,(26:0.0,(24:0.0,(19:0.0,(18:0.0,(17:0.0,(10:0.0,(9:0.0,3:0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.005376):0.0):0.0):0.354179):0.147067)[% ] [% ] [% setBetweenBits = selected ]; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1615872303424; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3055808933663094016; tell It; setDefaultOrder 40 39 38 37 36 35 34 33 32 31 30 29 28 27 26 25 24 23 22 0 21 20 19 18 17 16 15 14 13 12 11 10 9 8 7 6 5 4 3 2 1; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7552747493821348958; mqVersion 361; checksumv 0 3 1739652897 null getNumChars 229 numChars 229 getNumTaxa 41 numTaxa 41 short true bits 15 states 15 sumSquaresStatesOnly 180203.0 sumSquares 180203.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 175; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1089 662; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7552747493821348958 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -72; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;