#NEXUS [written Wed Sep 01 15:58:35 CEST 2021 by Mesquite version 3.61 (build 927) at mdk-crou-006.cbs-niob.local/10.136.73.120] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=31; TAXLABELS Candida_broadrunensis_KY106372.1 Tuber_excavatum_DQ191677.1 Tuber_neoexcavatum_KY013643.1 Tuber_buendiae_MT102376.1 Tuber_melosporum_JN392202.1 Tuber_pustulatum_MK211308.1 Tuber_malacodermum_JQ925702.1 Tuber_wenchuanense_MH115327.1 Tuber_huidongense_GU979099.1 Tuber_furfuraceum_GU979090.1 Tuber_sinoalbidum_MH115299.1 Tuber_microspiculatum_MH115316.1 Tuber_umbilicatum_GU979086.1 Tuber_huidongense_GU979097.1 Tuber_alcaracense_MN953777.1 Tuber_aestivum_KF523368.1 Tuber_aestivum_var._uncinatum_MG385627.1 Tuber_macrosporum_FJ809838.1 Tuber_canaliculatum_DQ191675.1 Tuber_californicum_JQ925685.1 'Tuber floridanum NG_064427.1' Tuber_lusitanicum_MT705332 'Tuber hubeiense NG_059582.1' Tuber_pseudomagnatum_KP276193.1 Tuber_microverrucosum_KT067696.1 Tuber_anniae_JQ925681.1 Tuber_liyuanum_KT067698.1 Tuber_jinshajiangense_KX575846.1 Tuber_borchii_JQ925682.1 Tuber_pseudoseparans_KT897480.1 Tuber_brunneum_KT897478.1 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1104; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Candida_broadrunensis_KY106372.1 -----------------------------------aacttaagcatatcaataagcggaggaaaagaaaccaacaggg-att-gtctt-agtaacggcgagtgaagcgacaaaagctcaaatttgaaatctggcgcc--ttcggtgtccgagttgtaatttgaagaaggtaactttggttttggctcttgtctatgttccttggaacaggacgtcacagagggtgagaatcccgtgc--gatgagat--gcc-caattccatgtaaagtgctttcgaagagtcgagttgtttgggaatgcagctctaagtgggtggtaaattccatctaaagctaaatattggcgagagaccgatagcgaacaagtacagtgatggaaagatgaaaagaactttgaaaagagagtgaaaaagtacgtgaaattgttgaaagggaagggcttgagatcagacttggtattttgta---tgtctt-actttcgggtggggcctctgcagtttaccgggccagcatcagtttggatggtaggataatgacat-tggaatgtggctctgcttcggtagagtgttatagcccttgttg--atactgcctgtctagactgaggactgcgtctttgactaggatgctggcataatgatcctaagccacccgtcttgaaacacggaccaaggagtctaacgtctatgcgagtgtttgggtgtaaaacccgtacgcgtaatgaaagtgaacgtaggtgagagcccttt---gggtgcatcatcgaccgatcctgatgtcttcggatggatttgagtaagagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgtagcggttctgacgtgcaaatcgatcgtcgaatttgggtata-ggggcgaaagact-aatcgaaccatctagtagctggttcctgccgaa--------------------------------------------------------------------------------------------------------------------------------------- Tuber_excavatum_DQ191677.1 ----------------------------------------aagcatatcaataagcggaggaaaagaaaccaacaggg-att-gcccc-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcgcc--tccggcgtccgagttgtaatttggagaggcatctttggga--ggggcccagcctaagctccttggaacagcacgtcacagagggtgagaatcccgttcttggctggat--gtt-ccctcccctataaagcgccttcgatgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagactcagcccctgacaaacaactgt-ccttctgggcggtgcacttgtcctgggctgggccagcatcagttgggacggtgggataaaggcctcgggaatgtgactccgttc---aggagtgttatagccctgggtgcaatgccgcccgacccgactgtggaccgcg-cttcggctaggatgctggcgtaatggtcttcagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctccaaaccctcacgcgtaatgaaagtgaacggaggtgggaatcccgtcagggatgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata-ggggcgaaagact-aatcgaaccatctagtagctggttcctgccgaagtttccctcagga-------------------------------------------------------------------------------------------------------------------------- Tuber_neoexcavatum_KY013643.1 -------------------------------------------------------------cagcggagacaacaggg-att-gcccc-agtaacggcgagtgaagcggcatgagctcaaatttgaaatctggcgcc--tccggcgtccgagttgtaatttggagaggcatctttggga--ggggcccagcctaagctccttggaacagcacgtcacagagggtgagaatcccgttctcggccggat--gtt-ccctcccgtaaaaagcgccttcgatgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagactcagcctctgacaaacaaccgt-ccttctgggcggtgcacttgtcctgggctgggccagcatcagttgggacggcgggataaaggcctggggaatgtgactcctctg---aggagcgttatagccccgggtgcaatgccgcccgacccgactgtggaccgcg-cttcggctaggatgctggcgtaatggtcttcagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggctccaaaccctcacgcgtaatgaaagtgaacggaggtgggaaccccgtcaggggtgcaccatcgaccgatcctgatgtcctcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata-ggggcgaaagact-aatcgaaccatctagtagctggtcc-tgcagatttttctc-------------------------------------------------------------------------------------------------------------------------------- Tuber_buendiae_MT102376.1 --------------------------------------------------------ggaggaaaagaaaccaacaggg-att-gccct-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcgcc--tctggtgtccgagttgtaatttggagaggcatcttccgga--ggggcccagcctatgttcctaggaacaggacatcacagagggtgagaatcccgttcatggctggat--gta-cccttcagtaggtagtgccttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagatcagactcagccttgggcaaacaactgt-ccttctggatggtgcacttgccctcggctgggccagcatcagttaggacggtggaataaaggcttggggaatgtgactccgctt---tggagtgttatagcctcaggtgccatcccacctggcctgactgtggaccgcg-cttcggctaggatgctggcgtaatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctatagaccctcacgcggaataaaagtgaacggaggtgggaaccctgtgaggggcgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtc-aatttgggtata-tgggcgaaagact-aatcgaaccatctagtagctggttcctgccgaaatttccctc------------------------------------------------------------------------------------------------------------------------------ Tuber_melosporum_JN392202.1 -----------------------------------------------------------------------------------------------ggcgagtgaagcggc-aaagctcaaatttgaaatctggcacc--tctggtgtccgagttgtaatttggagaggcatcttccgga--ggggtccagcctatgttccttggaacaggacgtcatagagggtgagaatcccgttcatggctggat--gta-cccttcatcaggtagtgccttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagactcagccttgggcaaacaactgt-ccttctggatggtgcacttgcccttggctgggccagcatcagttaggacggtggaataaaggcctggggaatgtgactccactt---aggagtgttatagcctcaggtgccatcccgcctggcctgactgtggaccgcg-cttcggctaggatgctggcgtaatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctacagaccctcacgcgtaataaaagtgaacggaggtgggaaccctatacggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata-ggggcgaaagact-aatcgaaccatctagtagctggttcctgccgaagtttccctcaggatagcagtaacg-atctcagttttatgaggtaaagcgaatgattagaggccttggggttgtaacaaccttaacctattctcaaactttaaatatgtaagaagtccttgttgcttaattgaacg Tuber_pustulatum_MK211308.1 ----ttgacctcgaatcaggtagggatacccgctgaacttaagcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcgcc--tccggtgtccgagttgtaatttggagaggcatcttccgga--ggggtccagcctatgttccttggaacaggacatcacagagggtgagaatcccgtgcatggctggat--gtgccccttcattaggtagtgccttctatgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagactcagccttgggcgaacaactat-ccttctggatggtgcacttgtccagggctgggccagcatcagttaggacgggggaataaaggctcggggaatgtgactcctcgt---tggagtgttatagcctcgggtgccatccctcctgtcctgactgtggaccgcg-cttcggctaggatgctggcgtaatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctgcagaccctcacgcgtaataaaagtgaatggaggtgggaaccctgaaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgt???????????????????????????--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_malacodermum_JQ925702.1 ----------------------------------------------------aagcggaggaaaagaaaccaacaggg-att-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcg-c--tccggtgtccgagttgtaatttggagaggcatcttccgga--ggggtccagcctatgttccttggaacaggacatcacagagggtgagaatcccgtgcatggctggat--gtgccccttcattaggtagtgccttctatgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagactcagccttgggcgaacaactat-ccttctggatggtgcacttgtccagggctgggccagcatcagttaggacgggggaataaaggctcggggaatgtgactcctcgt---tggagtgttatagcctcgggtgccatccctcctgtcctgactgtggaccgcg-cttcggctaggatgctggcgtaatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctgcagaccctcacgcgtaataaaagtgaatggaggtgggaaccctgaaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatt-gggta??--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_wenchuanense_MH115327.1 -------------------------ttacccgctgaacttaagcatatcaataagcggaggaaaagaaaccaacRgggRctttgcccctagtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcgcc--tctggtgtccgagttgtaatttggagaggtatcttccgga--ggggtccagcctatgttccttggaacaggacatcacagagggtgagaatcccgttcgtggctggat--gta-ccctttagtaggtagtgccttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgaKaccagactcagccttgggcaaacaacttc-ccttttgggtggtgcacttgcccttggctgggccagcatcagttaggacggtggaataaaggctcggggaatgtgactccgctc---aggagtgttatagcctcgggtgccatcccacctgtcctgactgtggaccgcg-cttcRgctaggatgctggcgtaatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggttacagaccctcacgcgtaataaaagtgaacggaggtgggaaccctgagaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata--gggcgaaagacttaatcgaact--------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_huidongense_GU979099.1 ---------------------------------------taagcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcacc--tctggtgtccgagttgtaatttggagaggcatcttccgaa--ggggtccagcctatgttccttggaacaggacatcgcagagggtgagaatcccgttcatggctggatacata-tccttcagtaggtagtgctttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagatcagactcagccttgggcaaacaacttt-ccttctgggtggtgcacttgctcttggctgggccagcatcagttagggtggtggaataaaggcctgtggaatgtgactccactt---tggagtgttatagcctcgggtgccatcccacctgccctgactgtggaccgcg-ctttggctaggatgctggcataatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctatagaccctcacgcgtaataaaagtgaacggaggtgggaaccctgagaggggtgcactatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata-ggggcgaaagac-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_furfuraceum_GU979090.1 ----------------------------------------------------------------------------------------------------gtgaagcggcaaaagctcaaatttgaaatctggcacc--tctggtgtccgagttgtaatttggagaggcatcttccgaa--ggggtctagcctatgttccttggaacaggacatcgcagagggtgagaatcccgttcatggctggatacata-cccttcagtaggtagtgctttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagatcagactcagccttgggcaaacaatctt-ccttctgggtggtgcacttgctcttggctgggccagcatcagttagggtggtggaataaaggcctgtggaatgtgactccactt---tggagtgttatagcctcgggcgccatcccacctgccctgactgtggaccgcg-ctttggctaggatgctggcataatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctatagaccctcacgcgtaataaaagtgaacggaggtgggaaccctgagaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata-ggggcgaaagact-aatcgaa----------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_sinoalbidum_MH115299.1 ------------------------------------------------------------agggagagaaccacaggg-att-gcctc-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcacc--tctggtgtccgagttgtaatttggagaggcatcttccgca--ggcgttcagcctatgttcctttgaacaggacatcacagagggtgagaatcccgttcatggctggac--ata-ccctgcagtaggtagtgccttcaacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagatcagactcagccttgggcaaacaacttt-ccttctgggtggtgcacttgcccttggttgggccagcatcagttaggacggtggaataaaggcttggggaatgtgactccgctt---aggagtgttatagcctcaggtgccatcccgcctgtcctgactgtggaccgcg-cttcggctaggatgctggcataatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctctagaccctcacgcgtaataaaagtgaacggaggtgggaaccttgagaggggcgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata-ggggcgaaagact-aatcgaaccattcaattgc----------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_microspiculatum_MH115316.1 -------------------------------------aactagcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctc-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcacc--tccggtgttcgagttgtaatttggagaggcatcttccgca--ggggttcagcctatgttcctttgaacaggacatcacagagggtgagaatcccgttcatggctggac--gta-ccccgcagtaggtagtgccttcaacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagatcagactcagccttgggcaaacaacttt-ccttctgggtggtgcacttgcccttggttgggccagcatcagttaggacggtggaataaaggcttggggaatgtgactccgctt---aggagtgttatagccccgggtgccatcccgcctgtcctgactgtggaccgcg-cttcggctaggatgctggcataatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctctagaccctcacgcgtaataaaagtgaacggaggtgggaacctcgagaggggcgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata-ggggcgaaagact-aatcgaaccatctagtagctggttcctgccgaatt------------------------------------------------------------------------------------------------------------------------------------- Tuber_umbilicatum_GU979086.1 -----------------------------------------------------------------------------------------------------tgaagcggcaaaagctcaaatttgaaatctggcatc--tctggtgtccgagttgtaatttggagaggcatcttccgta--ggggttcagcctatgttcctttgaacaggacatcacagagggtgagaatcccgttcatggctggac--gtg-ccccgcagtaggtagtgccttcaacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagatcagactcagccttgggcaaacaacttt-ccttctggttggtgcaattgcccttggttgggccagcatcagttaggacggtggaataaaggcttggggaatgtgactccgctt---tggagtgttatagcctcaggtgccatcccgcctgtcctgactgtggaccgcg-cttcggctaggatgctggcataatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctctagaccctcacgcgtaataaaagtgaacggaggtgggaacctcgagaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata-ggggcgaaagact-aatcgaa----------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_huidongense_GU979097.1 -----------------------------------------agcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctc-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcatc--tctggtgtccgagttgtaatttggagaggcatcttccgca--ggggttcagcctatgttcctttgaacaggacatcacagagggtaagaatcccgttcatggctggac--gtg-ccccgcagtaggtagtgccttcaacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagatcagactcagccttgggcaaacaacttt-ccttctggttggtgcaattgctcttggttgggccagcatcagttaggacggtggaataaaggcttggggaatgtgactccgctt---tggagtgttatagcctcaggtgccatcccgcctgtcctgactgtggaccgcg-cttcggctaggatgctggcataatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctctagaccctcacgcgtaataaaagtgaacggaggtgggaacctcgagaggggcgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata-ggggcgaaagact-aatc-------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_alcaracense_MN953777.1 -------------------------------------cttaagcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctc-agtaacggcgagtgaagcggcaagagctcaaatttgaaatctgacgccacgccggcgtccgagttgtaatttggaggggcatcttcagga-gggggcccggcctatgtcccttggaacagggcgtcgcagagggtgagaatcccgtccttggccggac--cgt-ccctctggctcgaagtgccttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatacgggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagcacgtgaaattgttgaaagggaagcgcttgagaccagactcggccattgactaacagctgt-ccttgtgggcggtgcacttgtccttggccgggccagcatcggttgggacggtgggacaaaggcccggggaatgtgactccctcg---tggagtgttatagcccctggtgaaatgccgcctgtcccgaccgaggaccgcg-ctccggctaggatgctggcgcaatggtcttcagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggcttcaaaccctagcgcgtaatgaaagtgaacggaggtgggaaccccgtctggggcgcaccatcgaccgatcctgatgtcctcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcgaatttgggtata-ggggcgaaagact-aatcgaaccatctagtagctggttcctgccgaagtttcccctcagtaa------------------------------------------------------------------------------------------------------------------------ Tuber_aestivum_KF523368.1 ------------------------------------------------------------------------------------------gtaacggcgagtgaagcggcaagagctcaaatttgaaatctggcgccccgccggcgtccgagttgtaatttggagaggcatcttcagga-gggggcccggcctatgttccttggaacagggcgtcgcagagggtgagaatcccgttcttggccggac--agc-ccctccggtgtgcagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatatgggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagcacgtgaaattgttgaaagggaagcgcttgagaccagactcggccatggactaacagctgtcccttctgggcggtgcacttgtccttggccgggccagcatcggttgggacggcgggacaaaggctgggggaatgtgactcccttg---aggagtgttatagcccccggcgccatgccgcccgccccgaccgaggaccgcg-cttcggctaggatgctggcgtaatggtcttcagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggcttcaaaccctagcgcgtaatgaaagtgaacggaggtgggaaccccgcgaggggcgcaccatcgaccgatcctgatgtcctcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata-ggggcgaaagact-aatcgaaccatctagtagctggttcctgccgaagtttccctcaggatagcagtaacgaatctcagttttatgaggtaaagcgaatgattagaggccttggggttgtaacaaccttaacctattctcaaactttaaatatgtaagaagtccttgttgcttaattgaacg Tuber_aestivum_var._uncinatum_MG385627.1 --------------------------------------------------------------------------------------------aacggcgagtgaagcggcaagagctcaaatttgaaatctggcgccccgccggcgtccgagttgtaatttggagaggcatcttcagga-gggggcccggcctatgttccttggaacagggcgtcgcagagggtgagaatcccgttcttggccggac--agc-ccctccggtgtgcagtgtcttccacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatatgggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagcacgtgaaattgttgaaagggaagcgcttgagaccagactcggccatggactaacagctgtcccttctgggcggtgcacttgtccttggccgggccagcatcggttgggacggcgggacaaaggctgggggaatgtgactccctcg---aggagtgttatagcccccggcgccatgccgcccgccccgaccgaggaccgcg-cttcggctaggatgctggcgtaatggtcttcagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggcttcaaaccctagcgcgtaatgaaagtgaacggaggtgggaaccccgcgaggggcgcaccatcgaccgatcctgatgtcctcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata-gggg---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_macrosporum_FJ809838.1 tgggttgacctcggatcaggtagggatacccgctgaacttaagcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctc-agtaacggcgagtgaagcggcagaagctcaaatttgaaatctggcgtc--tgcggcgcccgagttgtactttggagaggcatcttccaga--ggggcccggcctatgtgccttggaacaggacgtcacagagggtgagaatcccgttctcggccggat--gtc-ccctccgctattcagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagactcggcctttgacaaacaatagt-ccttctgggctgtgcacttgtcatcggctgggccagcatcggttgggacggcgggataaaggtccggggaatgtgactccttcc---aggagtgttatagccccgggcgccatgccgcccgtcccgaccgtggaccgcg-cttcggctaggatgctggcgtaatggtcttcagcggcccgtcttgaaacacggaccaaggagtctaacgtctatgcgagtgtttgggctccaaaccctcacgcgtaatgaaagtgaacggaggtgggaaccccgcagggggagcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtat?--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_canaliculatum_DQ191675.1 -------------------------------------cttaagcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctc-agtaacggcgagtgaagcggcagaagctcaaatttgaaatctggcgtc--tgcgacgcccgagttgtactttggagaggcatcttccgga--ggggcccagcctatgtgccttggaacaggacgtcacagagggtgagaatcccgttctcggccggat--gtc-ccctcccgtatgcagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagactcgacctttgacgaacaacggtcccttccgggcagtgcactcgtcatcggtcgggccagcatcggttgggacggcgggataaaggtccggggaatgtgactccgtcc---aggagtgttatagccccgggcgccatgctgcccgtcccgaccgtggaccgcg-cttcggctaggatgctggcgtaatggtcttcagcggcccgtcttgaaacacggaccaaggagtctaacgtctatgcgagtgtttgggctccaaaccctcacgcgtaatgaaagtgaacggaggtgggaaccccgcagggggcgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata-ggggcgaaagact-aatcgaaccatctagtagctggttcctgccgaagtttccctcagga-------------------------------------------------------------------------------------------------------------------------- Tuber_californicum_JQ925685.1 ----------------------------------------------------------------------------gg-att-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctaacgcc--tctggtgttcgagttgtaatttggagaggcatcttccgga--ggggcccagcctatgtgccttggaacaggacgtcatagagggtgagaatcccgttcttggctggat--gtt-ccctcctttatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatactggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaaaagtacgtgaaattgttgaaagggaagcgcttgagaccagagtcagcctttggcaaacaattgt-cctttggggcggtgcacttgtcattggttgggccagcatcgattgggacggtgggataaaggcttgggaaatgtgactccatta---cggagtgttatagtcccaggtgtcatgccatcagtcccgatcgtggaccgcg-ctttggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcgagtgtttgggcttcaaacccttacgcgtaatgaaagtgaacggaggtgggaaccctgaaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata-ggggcgaaagac-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Tuber floridanum NG_064427.1' --------------------------------------------------------------------------------------tt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctgacatc--tctgatgttcgagttgtaatttggagagacatcttctgga--gggacccagcctatgtgccttggaacaggacatcatagagggtgagaatcccgttcttggctggat--gtt-ccctcctccatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatactggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaaaagtacgtgaaattgttgaaagggaagcgcttgagatcagagtcagcctttggcaaacaactgt-ccttatgggcagtgcacttgtcattggttgggtcagcatcggttgggatggtgggataaaggcttgggaaatgtgactccttta---tggagtgttatagtcctgggcggcatgccatcagtctcgaccgtggaccgcg-cctcggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcaagtgtttgggcttcaaaccctcacgcgtaatgaaagtgaacggaggtgggaaccctgaaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata-ggggcgaaagact-aatcgaaccatctagtagctggtcctgc-------------------------------------------------------------------------------------------------------------------------------------------- Tuber_lusitanicum_MT705332 ---------------------------------------taagcatatcaataagcggaggaaaagaaaccaacgggg-att-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctgacgcc-ttctggtgttcgagttgtaatttggagaggcatcttccgga--gtggcccagcctatgtaccttggaacaggacgtcatagagggtgagaatcccgttcttggctggat--gtt-cactcctgtatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagagtcaacctttggcaaacaattgt-ccttctgggcggtgcacttgtcattggttgggccagcatcggttgggacggtgggataaaggcttgggaaatgtgactccttta---tggagtgttatagtcccaggtggcatgccatcagtcccgaccgtggaccgcg-ccttggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcgagtgtttgggctttaaaccctcacgcgtaatgaaagtgaacggaggtgggaaccctgagaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatagggggcgaaagact-aatcgaaccatctagtagctggttcctgccgaagtttcccctc----------------------------------------------------------------------------------------------------------------------------- 'Tuber hubeiense NG_059582.1' ------------------------tttacccgcggaacttaagcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctc-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctgacacc--catggtgttcgagttgtaatttggagaggcatcttccgga--gtggcccagcctatgtaccttggaacaggacgtcatagagggtgagaatcccgttcttggctggat--gtt-cactcccgtatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagagtcagcctttggcaaacaactgt-ccttctgggtggtgcacttgtcattggttgggccagcatcggttgggacggtgggataaaggcttgggaaatgtgactccttta---tggagtgttatagtcccaggtggcatgccatcagtctcgaccgtggaccgcg-ccttggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcgagtgtttgggcttcaaaccctcacgcgtaatgaaagtgaacggaggtgggaaccctgaaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata-ggggcgaaagact-aatcgaccctttcaagggt----------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_pseudomagnatum_KP276193.1 --------------------------------------actagcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcacc--tctggtgttcgagttgtaatttggagaggcatcttctgga--gtggcccagcctatgtgccttggaacaggacatcatagagggtgagaatcccgttcttggctggat--gtt-cactcctgtatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaaaagtacgtgaaattgttgaaagggaagcgcttgagaccagagtcaacctttggcaaacaactgt-tcttctgagcggtgcacttgtcatcggttgggccagcatcggttgggacggtgggataaaggcttgggaaatgtgactccttta---tggagtgttatagtcccaggtggcatgtcaccagtcccgaccgtggaccgcg-ccttggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcaagtgtttgggcttcaaaccctcacgcgtaatgaaagtgaacggaggtgggaaccctgaaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata-ggggcgaaagact-aatcgaaccatctagtagctggttcctgccgaagttcccctcaggaaa------------------------------------------------------------------------------------------------------------------------ Tuber_microverrucosum_KT067696.1 ------------------------------------------------------gtactcggacaaaaaccaacagggaatt-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcacc--tctggtgttcgagttgtaatttggagaggcatcttctgga--gtggcccagcctatgtgccttggaacaggacatcatagagggtgagaatcccgttcttggctggat--gtt-cactcctgtatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaaaagtacgtgaaattgttgaaagggaagcgcttgagaccagagtcaacctttggcaaacaactgt-tcttctgagcggtgcacttgtcatcggttgggccagcatcggttgggacggtgggataaaggcttgggaaatgtgactccttta---tggagtgttatagtcccaggtggcatgtcaccagtcccgaccgtggaccgcg-ccttggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcaagtgtttgggcttcaaaccctcacgcgtaatgaaagtgaacggaggtgggaaccctgaaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata--gggcgaaagact-aatcgaaccattctgatggc---------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_anniae_JQ925681.1 ----------------------------------------------------------------------------gg-att-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctaacacc--tctggtgttcgagttgtactttggagaggcatcttctgga--ggggcccagcctatgtgccttggaacaggacgtcatagagggtgagaatcccgtccttggctggat--gtt-ccctcctgtatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagatcagagtcggcctttggcaaacaactgtcccttctgggtggtgcacttgtcattggctgggccagcatcggttgggacggcaggataaaggcctggggaatgtgactcctcta---tggagtgttatagccccaggcggcatgctgtcagccccgaccgtggaccgcg-ccttggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcaagtgtttgggctccaaaccctcacgcgtaatgaaagtaaacggaggtgggaaccctgagaggggcgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata-ggggc?aaagact-aatcgaaccatctagta?ctggttcctgcc------------------------------------------------------------------------------------------------------------------------------------------ Tuber_liyuanum_KT067698.1 ------------------------------------------------------------cggaccaggacaacaggg-att-gcctc-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctgacatc--tctggtgtccgagttgtactttgaagaggcatcttctgga--ggggcccagcctatgtgccttggaacaggacgtcatagagggtgagaatcccgttcttggctggat--gtt-ccctcctgtatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagagtcagcctttggcaaacaactgt-ccttctgggtggtgcacttgtcattggttgggccagcatcggttgggacggcaggataaaggcccagggaatgtgactccttca---tggagtgttatagccccaggcggcatgctgtcagccccgaccgtggaccgcg-cttcggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcaagtgtttgggctccaaaccctcacgcgtaatgaaagtaaacggaggtgggaaccctgaaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata-ggggcgaaagact-aatcgaaccatctagtagctggttcctgccgagctctcctccagaggagag--------------------------------------------------------------------------------------------------------------------- Tuber_jinshajiangense_KX575846.1 --------------------------------------actagcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctgacatc--tctggtgttcgagttgtactttggagaggcatcttccgga--ggggcccagcttatgtgccttggaacaggacgtcatagagggtgagaatcccgttcttggctggat--gtt-ccctcctgtatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagagtcagcctttggcaaacaacttc-ccttctgggtggtgcacttgttattggttgggccagcatcggttgggacggcaggataaaggcccagggaatgtgactccttta---tggagtgttatagccccaggcggcatgctgtctgccccgaccgtggaccgcg-cctcggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcaagtgtttgggctccaaaccctcacgcgtaatgaaagtaaacggaggtgggaatcctgcaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata-ggggcgaaagact-aatcgaaccatctagtagctggttcctgccgagaccccccctccaggaa----------------------------------------------------------------------------------------------------------------------- Tuber_borchii_JQ925682.1 --------------------------------------------------------------------------aggg-att-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcgcc--tctggtgtccgagttgtactttggagaggcatcttctgga--ggggcccagcctatgtgccttggaacaggacgtcatagagggtgagaatcccgtccttggctggat--att-ccctcctgtatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagagttagcctttggcaaacaactat-ccttctggatggtgcacttgtcattggttgggccagcatcggttgggacggcaggataaaggcccagggaatgtgactccttta---tggagtgttatagccccaggcggcatgctgtcagccccgaccgtggaccgcg-cttcggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcgagtgtttgggctctaaaccctcacgcgtaatgaaagtaaacggaggtgggaaccctgaaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata-ggggcgaaagact-aatcgacc---------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_pseudoseparans_KT897480.1 --ggttgacctcggatcaggtagggatacccgctgaacttaagcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcgcc--tatggtgtccgagttgtactttggagaggcatcttctgga--ggggcccggcctatgtgccttggaacaggacgtcatagagggtgagaatcccgtccttggctggat--gtt-ccctcctgtatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagagtcagcctttggcaaacaactgt-ccttttgggtagtgcacttgtcattggttgggccagcatcggttgggacggcaggataaaggcccagggaatgtgactccttta---tggagtgttatagccccaggcggcatgctgtcagccccgaccgtggaccgcg-cctcggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcaagtgtttgggctccaaaccctcacgcgtaatgaaagtaaacggaggtgggaaccctgaaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggta??--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_brunneum_KT897478.1 --ggttgacctcggatcaggtagggatacccgctgaacttaagcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcgcc--tctggtgtccgagttgtactttggagaggcatcttctgga--ggggcccggcctatgtgccttggaacaggacgtcacagagggtgagaatcccgtccttggccggat--gtt-ccctcctgtatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagagtcagcctttggcaaacaactgt-ccttttgggtagtgcacttgtcattggttgggccagcatcggttgggacggcaggataaaggcccaggaaatgtgactccttta---tggagtgttatagccccaggcggcatgctgtcagccccgaccgtggaccgcg-cctcggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcaagtgtttgggctccaaaccctcacgcgtaatgaaagtaaacggaggtgggaaccctgaaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggta??--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN mrbayes; outgroup Candida_broadrunensis_KY106372.1; charset locus1 = 1 -1104; charset excludedchars = 1 -101 922 -1104; exclude excludedchars; partition AllLoci = 1 : locus1; log start filename = 000PezizomycetesLSU.log; END; BEGIN mrbayes; set partition = AllLoci; prset statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); lset nst = 6 rates = invgamma; unlink shape = ( all ) pinvar = ( all ) statefreq = ( all ) revmat = ( all ); mcmcp ngen = 10000000000 nchains = 4 printfreq = 10 temp = 0.15 samplefreq = 10 savebrlens = yes stoprule = yes stopval = 0.01 filename = 000PezizomycetesLSU; mcmc; sump; sumt; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 1104; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 1104; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 1104; END; BEGIN TREES; Title 'Fig. 6. Overview Pezizomycetes LSU phylogeny'; ID 017ba0d90e6c14; LINK Taxa = Taxa; TRANSLATE [0] 1 Candida_broadrunensis_KY106372.1, [1] 2 Tuber_excavatum_DQ191677.1, [2] 3 Tuber_neoexcavatum_KY013643.1, [3] 4 Tuber_buendiae_MT102376.1, [4] 5 Tuber_melosporum_JN392202.1, [5] 6 Tuber_pustulatum_MK211308.1, [6] 7 Tuber_malacodermum_JQ925702.1, [7] 8 Tuber_wenchuanense_MH115327.1, [8] 9 Tuber_huidongense_GU979099.1, [9] 10 Tuber_furfuraceum_GU979090.1, [10] 11 Tuber_sinoalbidum_MH115299.1, [11] 12 Tuber_microspiculatum_MH115316.1, [12] 13 Tuber_umbilicatum_GU979086.1, [13] 14 Tuber_huidongense_GU979097.1, [14] 15 Tuber_alcaracense_MN953777.1, [15] 16 Tuber_aestivum_KF523368.1, [16] 17 Tuber_aestivum_var._uncinatum_MG385627.1, [17] 18 Tuber_macrosporum_FJ809838.1, [18] 19 Tuber_canaliculatum_DQ191675.1, [19] 20 Tuber_californicum_JQ925685.1, [20] 21 'Tuber floridanum NG_064427.1', [21] 22 Tuber_lusitanicum_MT705332, [22] 23 'Tuber hubeiense NG_059582.1', [23] 24 Tuber_pseudomagnatum_KP276193.1, [24] 25 Tuber_microverrucosum_KT067696.1, [25] 26 Tuber_anniae_JQ925681.1, [26] 27 Tuber_liyuanum_KT067698.1, [27] 28 Tuber_jinshajiangense_KX575846.1, [28] 29 Tuber_borchii_JQ925682.1, [29] 30 Tuber_pseudoseparans_KT897480.1, [30] 31 Tuber_brunneum_KT897478.1; TREE 'Fig. 6. Overview Pezizomycetes LSU phylogeny' = (1:0.3004813,(2:0.01333196,3:0.01385816):0.02628358,((4:0.01161703,5:0.01415966):0.005074014,(6:0.0009231136,7:0.0009066974):0.02568858,(8:0.01201819,((9:0.003695565,10:0.005707511):0.01861795,(11:0.003292616,(12:0.005685549,(13:0.003199695,14:0.003221637):0.007653061):0.003672652):0.01745408):0.006259675):0.003617503):0.04299164,((15:0.04247656,(16:0.001575124,17:0.002323656):0.006322925):0.04822082,((18:0.01247268,19:0.01406472):0.02302555,(((20:0.01902881,21:0.0243819):0.004083465,((22:0.006625382,23:0.007815419):0.004236997,(24:0.0008054376,25:0.000856734):0.01287036):0.004670868):0.0139156,(26:0.01257837,(27:0.004947516,28:0.01242474,(29:0.009397646,(30:0.002185562,31:0.00448027):0.004984054):0.00419284):0.004114494):0.01153908):0.03779219):0.007766413):0.00881525); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1630504715035; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7533927269305744754; tell It; setDefaultOrder 30 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1409872925610215441; mqVersion 361; checksumv 0 3 3827185204 null getNumChars 1104 numChars 1104 getNumTaxa 31 numTaxa 31 short true bits 3458764513820540943 states 15 sumSquaresStatesOnly 574463.0 sumSquares -3.303350694999538E22 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 382; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1580 1091; setLocation 8 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #7533927269305744754 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #7533927269305744754; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1198 1019; setLocation 8 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7533927269305744754 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 017ba0d90e6c14; toggleUseWeights off; endTell; setAssignedID 2233.1630491190557.3872003331339952594; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1198 1019; setLocation 8 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientRight; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; setSelectedTaxonHighlightMode 1; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; setTaxonNameStyler #mesquite.trees.NoColorForTaxon.NoColorForTaxon; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(1:0.3004813,(2:0.01333196,3:0.01385816):0.02628358,((4:0.01161703,5:0.01415966):0.005074014,(6:0.0009231136,7:0.0009066974):0.02568858,(8:0.01201819,((9:0.003695565,10:0.005707511):0.01861795,(11:0.003292616,(12:0.005685549,(13:0.003199695,14:0.003221637):0.007653061):0.003672652):0.01745408):0.006259675):0.003617503):0.04299164,((15:0.04247656,(16:0.001575124,17:0.002323656):0.006322925):0.04822082,((18:0.01247268,19:0.01406472):0.02302555,(((20:0.01902881,21:0.0243819):0.004083465,((22:0.006625382,23:0.007815419):0.004236997,(24:0.0008054376,25:0.000856734):0.01287036):0.004670868):0.0139156,(26:0.01257837,(27:0.004947516,28:0.01242474,(29:0.009397646,(30:0.002185562,31:0.00448027):0.004984054):0.00419284):0.004114494):0.01153908):0.03779219):0.007766413):0.00881525);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1409872925610215441 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1198 1019; setLocation 8 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;