#NEXUS [written Wed Sep 01 15:48:35 CEST 2021 by Mesquite version 3.61 (build 927) at mdk-crou-006.cbs-niob.local/10.136.73.120] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=18; TAXLABELS Aspergillus_niger_KC119204.1 Hemileucoglossum_littorale_KP657566.1 Hemileucoglossum_kelabitense_MT021912.1 Hemileucoglossum_alveolatum_KP657565.1 Hemileucoglossum_pusillum_MF353093.1 Trichoglossum_hirsutum_JQ256442.1 Glutinoglossum_australasicum_KP690100.1 Leucoglossum_leucosporum_KP272113.1 Geoglossum_nigritum_AY544650.1 Geoglossum_fallax_JQ256435.1 Geoglossum_jirinae_MT940893 Geoglossum_raitviirii_KU986891.1 Geoglossum_umbratile_JQ256438.1 Geoglossum_dunense_KP744517.1 Geoglossum_cookeanum_JQ256434.1 Geoglossum_heuflerianum_KP742955.1 Geoglossum_difforme_KC222136.1 Geoglossum_simile_JQ256437.1 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1166; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Aspergillus_niger_KC119204.1 tgacctcggatcaggtagggatacccgctgaacttaagcatatcaataagcggaggaaaagaaaccaaccgggattgcctcagtaacggcg-agtgaagcggcaagagctcaaatttgaaagctggctcct---tcgg-agtccgcattgtaatttgcagaggatg-cttt-gggtgcggcccccgtctaagtgccctggaacgggccgtcagaga-gggtgagaatcccgtcttgggcggggtgtccgtgcccgtgtaaagctccttcgacgagtcgagttgtttgggaatgcagctctaaatgggtggtaaatttcatctaaagctaaatactggccggagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagagttaaacagcacgtgaaattgttgaaagggaagcgcttgcgaccagactcgcccgcgg-ggttcagc-cggcattcgt-gccggtgtacttccccgtgggcgggccagcgtcggtttgggcggccggtcaaaggcccct-ggaatgtagtgccctccggggcaccttatagccaggggtgcaatgcggccagcctggaccgaggaacgcgct-tc--gg-cacgga-----cgct-ggcataatggtcgtaaacgacccgtcttgaaacacggaccaaggagtctaacatctacgcgagtgttcgggtgtc-aaacccgtgcgcgcagtgaaagcgaacggaggtgggagcccccttgcggggcgcaccatcgaccgatcctgatgtcttcggatggatttgagtaagagcgtagctgtg-gggacccgaaagatggtgaactatgcctgaatagggcgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaattt-gggtata-ggggcgaaagactaatcgaaccatctagtagctggttcctgccgaagtttccctcaggatagcagtaacgcaaaatcagttttatgaggtaaagcgaatgattagaggcattggggttgaaacaaccttaacctattctcaaactttaaatatgtaagaagcccttgttgcttagttgaacgtgggcattagaatggagc------------------------------------- Hemileucoglossum_littorale_KP657566.1 -------------------------cgctgaacttaagcatatcaataagcggaggaaaagaaaccaacagggattgcctcagtaacggcg-agtgaagcggcaacagctcaaatttgaaatctggtcctcc-acagg-ggcccgagttgtaatttgtagaggaggtcttc-gggtttggccccggcctaagttccttggaacaggacgtcacaga-gggtgagaatcccgtatgtggctggaggtctatgcccatgtgaagctccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaagtttcatctaaagctaaataccggcgggagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttggaaagagagttaaaaagtacgtgaaattgttgaaagggaagcgcttgcgaccagacttgccctcagctgatcaat-cggtgttcatcaccggtgcactcggctgtggtcaggccagcatcggtctaggtggttggagaaaggtcccgtggaatgtggctcccctcggggagtgttatagcccggggtgcaatgcagccaacctggaccgaggaacgcgcc-ttcggg-ctagga-----tgct-ggcgtaatggtcgtaagcgacccgtcttgaaacacggacc?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Hemileucoglossum_kelabitense_MT021912.1 -------------------------??????????????????????????????????????????????????tgcctcagtaacggcg-agtgaagcggcaacagctcaaatttgaaatctggtctcct-acagg-ggcccgagttgtaatttgtagaggagatcttc-gggtttggccctggcctaagttccttggaacaggacgtcacaga-gggtgagaatcccgtatgtggctggaggtctatacccatgtgaagctccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaagtttcatctaaagctaaatactggcgggagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttggaaagagagttaaaaagtacgtgaaattgttgaaagggaagcgcttgcgaccagacttgccctcagctgatcaat-cggtgttcttcaccggtgcacttggctgttgtcaggccagcatcggtctaggcggctggagaaaggtcccgtggaatgtggctcccctcggggagtgttatagcccggggtgtcatgcagccagcctggaccgaggaccgcgcc-ttcggg-ctagga-----tgct-ggcgtaatggttgtaagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgta-aaacccatgcgcgtaatgaaagtgaacggaggtgggaacccct---gagggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaagagcatagctgtt-gggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaattt-gggtata-ggggcgaaagactaatcgaaccatctagtagctggttcctgccgaatt--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Hemileucoglossum_alveolatum_KP657565.1 -------------------------cgctgaacttaagcatatcaataagcggaggaaaagaaaccaacagggattgcctcagtaacggcg-agtgaagcggcaacagctcaaatttgaaatctggtccccc-gcagg-ggcccgagttgtaatttgcagaggagatcttc-gggtttggccccggcctaagttccttggaacaggacgtcacaga-gggtgagaatcccgtatgtggctggaggtctatgcccatgtgaagctccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaagtttcatctaaagctaaataccggcgggagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttggaaagagagttaaaaagtacgtgaaattgttgaaagggaagcgcttgcgaccagacttgccctcggctgatcaat-cggtgttcctcaccggtgcactcggtcgtggtcaggccagcatcggtctgggcggttggagaaagaccccgtggaatgtggctcccctcggggagtgttatagcccggggtgtcatgcagccagcctggaccgaggaccgcgcc-ttcggg-ctagga-----tgct-ggcgtaatggtcgtaagcgacccgtcttgaaacacggacc?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Hemileucoglossum_pusillum_MF353093.1 -------------------------??????????????????????????????????????????acagggattgcctcagtaacggcg-agtgaagcggcaacagctcaaatttgaaatctggtccccc-acagg-ggcccgagttgtaatttgtagaggagatcttc-gggtttggccccggcctaagttccttggaacaggacgtcacaga-gggtgagaatcccgtatgtggctggaggtctatgcccatgtgaagctccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaagtttcatctaaagctaaatactggcgggagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttggaaagagagttaaaaagtacgtgaaattgttgaaagggaagcgcttgcgaccagacttgccctcggctgatcaac-cggtgttcctcaccggtgcactcggtcgtggtcaggccagcatcggtctaggcggttggaaaaagaccctgtggaatgtggctcccctcggggagtgttatagcccggggtgtcatgcagccagcctggaccgaggaccgcgcc-ttcggg-ctagga-----tgct-ggcgtaatggtcgtaagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgta-aaacccatgcgcgtaatgaaagtgaacggaggtgggaacccct---gagggtgcaccatcgaccgatcctgatgtcttcagatggatttgagtaagagcatagctgtt-gggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaattt-gggtatagggggcgaaagactaatcgaaccatctagtagctggtcctgc---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Trichoglossum_hirsutum_JQ256442.1 -------------------------cgctgaacttaagcatatcaataagcggaggaaaagaaaccaacagggattgcctcagtaacggcg-agtgaagtggcaacagctcaaatttgaaatctggtccctt--tcgg-ggctcgagttgtaatttgtagaggatgccttc-gggtttggccctggcctaagttccttggaacaggacgtcacaga-gggtgagaatcccgtatgtggctggtggtctatgcccatgtgaagctccctcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaagtttcatctaaagctaaatactggcgggagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttggaaagagagttaaaaagtacgtgaaattgttgaaagggaagcgcttgcgaccagacttgcccttggttgatcaacctggtgttcatcaccggtgcactctgctgaggtcaggccagcatcggtttgggcggttggagaaaggccgtg-ggaatgtgacttcctttggggagtgttatagccttcggtgccatgcgaccagcctggactgaggaccgcgcc-tttaggtcgtgagcgacccgcttgatacacgggtcgtgagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgtc--aacccacacgcgtaatgaaagtgaatggaggtgggaaccctt-taaggggtgcaccatcgaccaatcctgatgtcttcggatggatttgagtaagagcatagctgtt-gggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaattt-gggtata-ggggcgaaagactaatcgaaccatctagtagctggttcctgccgaagtttccctcaggatagcagtaacgt--attcagttttatgaggtaaagcgaatgattagaggccttggggttgaaacaaccttaacctattctcaaactttaaatatgtaagaagtccttgttacttagttgaacgtggacatttgaatgtaccgttactagtgggccatttttggtaagcagaactggcg Glutinoglossum_australasicum_KP690100.1 -------------------------cgctgaacttaagcatatcaataagcggaggaaaagaaaccaacagggattgcctcagtaacggcg-agtgaagcggcaacagctcaaatttgaaatctggctcttt--tcag-ggtccgagttgtaatttgtagaggatgtcttc-gggtctgaccccggcctaagttccttggaacaggacgtcacaga-gggtgagaatcccgtatgtggctggaggtctattcccatgtgaagctccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaagtttcatctaaagctaaataccggcgggagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttggaaagagagttaaaaagtacgtgaaattgttgaaagggaagcgcttgcgaccagacttgccctcagttgatcagc-cggggatagaccccggtgcactctgctgaggtcaggccagcatcggtttaggcggttggagaaaggccttg-ggaatgtggctccctccggggagtgttatagcccacggtgtcatgcaaccagcctggaccgaggaccgcgc--ttcgtg-ctagga-----tgct-ggcttaatggtcgtaagcgacccgtcttgaaacacggacc?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Leucoglossum_leucosporum_KP272113.1 -------------------------cgctgaacttaagcatatcaataagcggaggaaaagaaaccaacagggattgcctcagtaacggcg-agtgaagcggcaacagctcaaatttgaaatctggctccctttcagg-agtccgagttgtaatttgcagagggtgcttct-gagtatggtcctagcctaagttccttggaacaggatgtcataga-gggtgagaatcccgtatgtggcttggaggcctgctcaatgtgaagccccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaagtttcatctaaagctaaatactggcgggagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttggaaagagagttaaaaagtacgtgaaattgttgaaagggaagcgcttgcaaccagacttgccctcagttgatcaac-cggtgatcttcaccggggtatgctgctaagggcaggccagcatcagtttgggcggttggaaaaagaccatg-ggaatgtggctctcttcggggagtgttatagcctgtggtgtcatacagccagcctggactgaggaccgcgccttttgtg-ctagga-----tgct-ggcgtaatggttgtaagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggtgtc-aaacccatgcgcgtaatgaaagtgaatggaggtgggaaccctt---aagggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaagagcatagctgtt-gggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaattt-gggtata-ggggcgaaagactaatcgaaccatc-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Geoglossum_nigritum_AY544650.1 -------------------------?????????taagcatatcaataagcggaggaaaagaaaccaacagggattgcctcagtaacggcg-agtgaagcggcaacagctcaaatttgaaatctggttcct---ctgg-agcccgagttgtaatttgtagaggatgtcttc-gggtttggccccggcctaagttccttggaacaggacgtcacaga-gggtgagaatcccgtatgtggctggaggtctatgcccatgtgaagctccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaagtttcatctaaagctaaatactggcgggagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttggaaagagagttaaaaagtacgtgaaattgttgaaagggaagcgcttgcgaccagacttgccctcagttgatcaac-cggtgttcttcaccggtgcactcggctgaggtcaggccagcatcggtttagacggttggagaaagaccatg-ggaatgtggctcccttcggggagtgttatagcctgtggtgccatgcagccagtttagaccgaggaccgcgcc--ttgtg-ctagga-----tgct-ggcgtaatggtcgtaagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgtc-aaacccatgcgcgtaatgaaagtgaacggaggtgggaaccctt---aagggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaagagcatagctgtt-gggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaattt-gggtata-ggggcgaaagactaatcgaaccatc-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Geoglossum_fallax_JQ256435.1 -------------------------cgctgaacttaagcatatcaataagcggaggaaaagaaaccaacagggattgcctcagtaacggcg-agtgaagcggcaacagctcaaatttgaaatctggtcttc---atga-ggcccgaattgtaatttgtagaggatgtcttc-gggtttggccccggcctaagttccttggaacaggacgtcacaga-gggtgagaatcccgtatgtggctggaggtctatacccatgtgaagctccttcgatgagtcgagttgtttgggaatgcagctcaaaatgggtggtaagtttcatctaaagctaaatactggcgggagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttggaaagagagttaaaaagtacgtgaaattgttgaaagggaagcgcttgcgaccagacttgccctcagctgatcaac-tagtgttattcactggtgcacttggttgaggtcaggccagcatcggtttgaacggttggagaaaggtcaga-ggaatgtggctcccttcggggagtgttatagcctgtgatgccatgcaaccagtttggaccgaggaccgcgcc-tttgtg-ctagga-----tgct-ggcgtaatggtcgtaagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgtc-aaacccatgtgcgtaatgaaagtgaacggaggtgggaaccctt---aagggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaagagcatagctgtt-gggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaattt-gggtata-ggggcgaaagactaatcgaaccatt-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Geoglossum_jirinae_MT940893 -------------------------?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????agttgtttgggaatgcagctcaaaatgggtggtaagtttcatctaaagctaaatactggcgggagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttggaaagagagttaaaaagtacgtgaaattgttgaaagggaagcgcttgcgaccagacttgccctcagctgatcaacttagtgttattcactggtgcacttggttgaggtcaggccagcatcggtttgaacggttggagaaagatcaga-ggaatgtggctcccttcggggagtgttatagcctgtgatgccatgcaaccagtttggaccgaggaccgcgcc-tttgtg-ctagga-----tgct-ggcgtaatggtcgtaagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgtc-aaacccatgtgcgtaatgaaagtgaacggaggtgggaaccctt---aagggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaagagcatagctgtt-gggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaattt-gggtata-ggggcgaaagactaatcgaaccatt-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Geoglossum_raitviirii_KU986891.1 -------------------------????????????????????????????????????????caacagggattgcctcagtaacggcg-agtgaagcggcaacagctcaaatttgaaatctggttcct---ttggggacccgagttgtaatttgtagaggatgccttc-gggtttggccccggcctaagttccttggaacaggacgtcacaga-gggtgagaatcccgtatgtggctggaggtctatgcccatgtgaagctccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaagtttcatctaaagctaaatattggcgggagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttggaaagagagttaaaaagtacgtgaaattgttgaaagggaagcgcttgcgatcagacttgcccttagttgatcaac-cggtgttcttcaccagtgcactctgctaaggtcaggccagcatcggtttaggcggttggagaaagatcgta-ggaatgtggctccctccggggagtgttatagcctatggtgccatgcaaccagcttagaccgaggaccgcgcc-tttgtg-ctagga-----tgct-ggcataatggtcgtaagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgtc-aaacccatgcgcgtaatgaaagtgaacggaggtgggaaccctt---aagggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaagagcatagctgtt-gggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaattt-gggtata-ggggcgaaagactaatcgaaccatc-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Geoglossum_umbratile_JQ256438.1 -------------------------cgctgaacttaagcatatcaataagcggaggaaaagaaaccaacagggattgcctcagtaacggcg-agtgaagcggcaacagctcaaatttgaaatctggttccc---ttggtgacccgagttggaatttgtagaggatgccttc-gggtttggccccggcctaagttccttggaacaggacgtcacaga-gggtgagaatcccgtatgtggctggaggtctatgcccatgtgaagctccctcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaagtttcatctaaagctaaataccggggggagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttggaaagagagttaaaaagtacgtgaaattgttgaaagggaagcgctggcgatcagacttgcccttagttgatcaac-tggtgttcttcaccggtgcactcggctaaggtcaggccagcatcggtttgggcggttggagaaagatcata-ggaatgtggctctctccggggagtgttatagcctgtggtggcatgcaaccagcttagaccgaggaccgcgcc-tttgtg-gtagga-----tgct-ggcgtaatggtcgtaagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgtc-aaacccatgcgcgtaatgaaagtgaacggaggtgggaaccctt---aagggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaagagcatagctgtt-gggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaattt-gggtata-ggggcgaaagactaatcgaaccatc-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Geoglossum_dunense_KP744517.1 -------------------------???????????????????????????????????????????????????gcctcagtaacggcg?agtgaagcggcaacagctcaaatttgaaatctggctcct---ctgg-ggcccgaattgtaatttgtagaggatg-cttc-gggtctggccccggcctaagttccttggaacaggacgtcacaga-gggtgagaatcccgtatgtggctggaggtctatacccatgtgaagcaccttcgacgtgtcgagttgtttgggaatgcagctcaaaatgggtggtaagtttcatctaaagctaaatactggcgggagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttggaaagagagttaaaaagtacgtgaaattgttgaaagggaagcgcttgcaaccagacttgcccttagttgatcaac-tggtgttcttcacccgtgcactcggctaaggtcaggccagcatcggtttaggcggttggagaaagaccata-ggaatgtagctccctccggggagtgttatagcctgcggtgtcatgcaaccagtttagaccgaggaccgcgcc-ttttgg-ctagga-----tgct-ggcgtaatggttgtaagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgtc-aaacccatgcgcgtaatgaaagtgaacggaggtgggaaccctt---aagggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtatgagcatagctgttggggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtgga?gctcgcagcggttctgacgtgcaaatcgatcgtcaaatttggggtatagggggcg-aa????????????????-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Geoglossum_cookeanum_JQ256434.1 -------------------------cgctgaacttaagcatatcaataagcggaggaaaagaaaccaacagggattgcctcagtaacggcg-agtgaagtggcaacagctcaaatttgaaatctggtccct---ctgg-ggcccgagttgtaatttgtagaggatgtcttc-gggtttggtcccggcctaaattccttggaacaggatgtcataga-gggtgagaatcccgtatgcggctggagatctatacctatgtgaagctccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaagtttcatctaaagctaaatactgacgggagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttggaaagagagttaaaaagtacgtgaaattgttgaaagggaagcgcttgcgaccagacttgcccttagttgatcaac-cggtgttcttcaccagtgcactcggctaaggtcaggccagcattggtttaggcggttggaaaaagaccata-ggaatgtagctcctcctggggagtgttatagcctgtggtgtcatgcaaccagtttagaccgaggaccgcgcc-tttgtg-ctagga-----tgct-ggcgtaatggttgtaagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgtt-aaacccatgcgcgtaatgaaagtgaacggaggtgggaacccct---aagggtgcaccatctaccgatcctgatgtcttcggatggatttgagtaagagcatagctgtt-gggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaattt-gggtata-ggggcgaaagactaatcgaaccatc-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Geoglossum_heuflerianum_KP742955.1 -------------------------cactgaacttaagcatatca?????????????????????cacagggattgcctcagtaacggcg-agtgaagcggcaacagctcaaatttgaaatctggttcct--ctggg-ggcccgagttgtaatttgtagaggatgtcttc-gggtttggccccggcctaagttccttggaacaggacgtcacgga-gggtgagaatcccgtatgtggctggaggcctatacccatgtgaagctccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaagtttcatctaaagctaaatactggcgggagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttggaaagagagttaaaaagtacgtgaaattgttgaaagggaagcgcttgcgaccagacttgcccttagttgatcaac-tggtgttcttcaccagtgcacttggctagggtcaggccagcatcggtctatacggttggaaaaagaccaaa-ggaatgtggctccctccggggagtgttatagcctacggtgtcatgcaaccagtttagaccgaggaccgcgcc-tccggg-ctagga-----tgct-ggcgtaatggttgtaagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgcctaaacccatacgcgtaatgaaagtaaacggaggtgggaaccctt---aagggtgcaccatcgaccgatcctgatgtcttcagatggatttgagtaagagcatagctgtt-gggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaattt-gggtata-ggggcgaaagactaatcgaaccatc-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Geoglossum_difforme_KC222136.1 -------------------------cgctgaacttaagcatatcaataagcggaggaaaagaaaccaacagggattgcctcagtaacggcg-agtgaagtggcaacagctcaaatttgaaatctggttcct---ctgg-ggcccgagttgtaatttgtagaggatgccttc-gggtttggccccggcctaagttccttggaacaggacgtcacaga-gggtgagaatcccgtatgtggctggaggtctatacccatgtgaagctccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaagtttcatctaaagctaaatattggcgggagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttggaaagagagttaaaaagtacgtgaaattgttgaaagggaagcgcttgcaaccagacttgcccttagttgatcaac-cggtgttcttcaccggtgcacttgactagggtcaggccagcatcggtttatgcggttggaaaaagatcgta-ggaatgtggctcccttaggggagtgttatagcctacggtgtcatgcaaccagtttagaccgaggaccgcgcc-tttgtg-ctagga-----tgct-ggcgtaatggttgtaagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggtgtt-aaacccatgcgcgtaatgaaagtgaatggaggtgggaacccct---aagggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtatgagcatagctgtt-gggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaattt-gggtata-ggggcgaaagactaatcgaaccatc-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Geoglossum_simile_JQ256437.1 -------------------------cgctgaacttaagcatatcaataagcggaggaaaagaaaccaacagggattgcctcagtaacggcg-agtgaagcggcaacagctcaaatttgaaatctggtccct---ctgg-ggcccgagttgtaatttgtagaggatgccttcagggtttggccccggcctaagttccttggaacaggacgtcacagaggggtgagaatcccgtatgtggctggaggtctatacccatgtgaagctccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaagtttcatctaaagctaaatactggcgggagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttggaaagagagttaaaaagtacgtgaaattgttgaaagggaagcgcttgcgaccagacttgcccttagttgatcaac-cggtgttcttcaccagtgcactcggctagggtcaggccagcatcggtttatgcggttggaaaaaggccgta-ggaatgtggctccctccggggagtgttatagcctatggtgccatgcaaccagtttagaccgaggaccgcgcc--tcgtg-ctagga-----tgct-ggcgtaatggttgtaagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgtt-aaacccatgcgcgtaatgaaagtgaacggaggtgggaaccctt---aagggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaagagcatagctgtt-gggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaattt-gggtata-ggggcgaaagactaatcgaaccatc-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN mrbayes; outgroup Aspergillus_niger_KC119204.1; charset locus1 = 1 -1166; charset excludedchars = 1 -25 955 -1166; exclude excludedchars; partition AllLoci = 1 : locus1; log start filename = 000GeoglossomycetesLSU.log; END; BEGIN mrbayes; set partition = AllLoci; prset statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); lset nst = 6 rates = invgamma; unlink shape = ( all ) pinvar = ( all ) statefreq = ( all ) revmat = ( all ); mcmcp ngen = 10000000000 nchains = 4 printfreq = 5 temp = 0.15 samplefreq = 5 savebrlens = yes stoprule = yes stopval = 0.01 filename = 000GeoglossomycetesLSU; mcmc; sump; sumt; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 1166; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 1166; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 1166; END; BEGIN TREES; Title 'Fig. 4. Overview Geoglossomycetes LSU phylogeny'; ID 017ba0d6e3e88; LINK Taxa = Taxa; TRANSLATE [0] 1 Aspergillus_niger_KC119204.1, [1] 2 Hemileucoglossum_littorale_KP657566.1, [2] 3 Hemileucoglossum_kelabitense_MT021912.1, [3] 4 Hemileucoglossum_alveolatum_KP657565.1, [4] 5 Hemileucoglossum_pusillum_MF353093.1, [5] 6 Trichoglossum_hirsutum_JQ256442.1, [6] 7 Glutinoglossum_australasicum_KP690100.1, [7] 8 Leucoglossum_leucosporum_KP272113.1, [8] 9 Geoglossum_nigritum_AY544650.1, [9] 10 Geoglossum_fallax_JQ256435.1, [10] 11 Geoglossum_jirinae_MT940893, [11] 12 Geoglossum_raitviirii_KU986891.1, [12] 13 Geoglossum_umbratile_JQ256438.1, [13] 14 Geoglossum_dunense_KP744517.1, [14] 15 Geoglossum_cookeanum_JQ256434.1, [15] 16 Geoglossum_heuflerianum_KP742955.1, [16] 17 Geoglossum_difforme_KC222136.1, [17] 18 Geoglossum_simile_JQ256437.1; TREE 'Fig. 4. Overview Geoglossomycetes LSU phylogeny' = (1:0.2050394,(2:0.01122063,(3:0.01135881,(4:0.006314447,5:0.004752529):0.007754921):0.002986886):0.02380854,(6:0.0545733,(7:0.03354199,8:0.06492558):0.005794797,(9:0.003428789,(10:0.002608306,11:0.001359873):0.0308142,((12:0.00785405,13:0.01696867):0.006960219,(14:0.01683115,(15:0.02226706,(16:0.02502734,(17:0.01835596,18:0.004828549):0.003044117):0.006110323):0.002829406):0.004253564):0.007460216):0.006182382):0.0195582); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1630504115388; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2791872689051711453; tell It; setDefaultOrder 17 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8979647893522648970; mqVersion 361; checksumv 0 3 615922357 null getNumChars 1166 numChars 1166 getNumTaxa 18 numTaxa 18 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 316843.0 sumSquares -1.9209978109759284E22 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 382; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1624 1040; setLocation 8 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #2791872689051711453 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #2791872689051711453; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1242 968; setLocation 8 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2791872689051711453 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 017ba0d6e3e88; toggleUseWeights off; endTell; setAssignedID 1676.1630491046437.1069281035717719515; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1242 968; setLocation 8 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientRight; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; setSelectedTaxonHighlightMode 1; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; setTaxonNameStyler #mesquite.trees.NoColorForTaxon.NoColorForTaxon; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(1:0.2050394,(2:0.01122063,(3:0.01135881,(4:0.006314447,5:0.004752529):0.007754921):0.002986886):0.02380854,(6:0.0545733,(7:0.03354199,8:0.06492558):0.005794797,(9:0.003428789,(10:0.002608306,11:0.001359873):0.0308142,((12:0.00785405,13:0.01696867):0.006960219,(14:0.01683115,(15:0.02226706,(16:0.02502734,(17:0.01835596,18:0.004828549):0.003044117):0.006110323):0.002829406):0.004253564):0.007460216):0.006182382):0.0195582);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8979647893522648970 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1242 968; setLocation 8 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;