#NEXUS [written Wed Sep 01 18:11:40 CEST 2021 by Mesquite version 3.70 (build 940) at 201715inchMBP/192.168.2.86] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=50; TAXLABELS Dothidea_sambuci_NR_111220.1 'Dothiora cytisi NR_148094.1' 'Neophaeocryptopus spartii NR_157480.1' 'Dothiora buxi NR_155059.1' 'Dothiora cactacearum NR_155064.1' 'Dothiora spartii NR_157479.1' Dothiora_aloidendri_CPC_38535 Dothiora_europaea_MK460357.1 Dothiora_elliptica_KU728502.1 Dothiora_pyrenophora_KY929145.1 Dothiora_sorbi_KU728514.1 'Dothiora prunorum NR_138366.1' 'Dothiora viburnicola NR_155058.1' 'Dothiora agapanthi NR_155055.1' 'Dothiora bupleuricola NR_155056.1' 'Dothiora phillyreae NR_155057.1' 'Dothiora ceratoniae NR_155050.1' 'Endoconidioma rosae-hissaricae NR_157516.1' Endoconidioma_euphorbiae_CPC_38551 Endoconidioma_euphorbiae_CPC_38583 Cf._Endoconidioma_populi_MT738230.1 Endoconidioma_leucospermi_EU552113.1 Endoconidioma_leucospermi_AY720707.1 'Endoconidioma populi NR_121303.1' Endoconidioma_populi_KX180155.1 Cf._Hormonema_carpetanum_AF182375.1 Cf._Hormonema_carpetanum_AY616201.1 Cf._Endoconidioma_populi_HM185487.1 Cf._Hormonema_carpetanum_MK907726.1 Endoconidioma_carpetanum_MK782310.1 Endoconidioma_carpetanum_AY616204.1 Endoconidioma_carpetanum_AY616205.1 Cf._Dothiora_mahoniae_MH862357.1 Scleroconidioma_sphagnicola_KU516586.1 'Scleroconidioma sphagnicola NR_121294.1' 'Rhizosphaera macrospora NR_166003.1' Rhizosphaera_macrospora_EU700368.1 Rhizosphaera_macrospora_AF462431.1 Neodothiora_populina_GU564978.1 Neodothiora_populina_GU564975.1 Neodothiora_populina_GU564998.1 Neodothiora_populina_CPC_39397 Neodothiora_populina_CPC_39398 Neodothiora_populina_CPC_39399 Neodothiora_populina_GU564977.1 Neodothiora_populina_GU564972.1 Neodothiora_populina_GU564976.1 Neodothiora_populina_GU564973.1 Neodothiora_populina_GU564968.1 Neodothiora_populina_GU564983.1 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=643; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Dothidea_sambuci_NR_111220.1 --------------------------------------------cattaaaagaatgttgggggacccggggcaacccggacaatccccttatacttcccaccctttgttgttataactaccttgttgctttggcggga-ccg-ttcg-gtcat----ccgagcgcaccagtcttc--ggacaggtgagcgcctgccagagtccaaccaaactcttgt---ttttaaccagtcgtctgagtataaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcaccgcttggtattgggca-tcgtccgccg-aaaggcgggcgtgcctcgaag-acctcggcggggtttctccaactt-cggg-cgtagtagagttaaatcg-aacgt-ctt-at-aag-cttgg-tgggactccattgccgtt-aaacctttt--atttt--ctaggttgacctcgg-atcaggtagggata--------------------- 'Dothiora cytisi NR_148094.1' -------------------------------------------------??????????????????????????????a--------------cctctcaccctttgttgttataactacctcgttgctttggcggga-ccg-tccc-aac------ccgagcgcgccggtcttc--ggacgggcgagcgcccgccagagtccaaccaaactcttgtt-ttttaaaccagtcgtctgagtaaaaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccctggtattccggggggcatgcctgttcgagcgtcattacaccactcaagcacagcttggtattgggcg-acgtccccct-cgcggggggcgcgcctcgaag-acctcggcggggtttctccaactt-cgga-cgtagtagagttaaatcaaaacgt-ctc-aa-gag-tctgg-gggggccccattgccgttaaaacctttt--attttt-c-agg-tgacc---------------------------------------- 'Neophaeocryptopus spartii NR_157480.1' -------------------------------------------------??????????????????????????????a--------------cctctcaccctttgttgtt-taaccacctcgttgctttggcggga-ccg-cgga-ggtcccaacccgaccgcgccggccttc--ggacgggcaagggcccgccaaagtccaaccaaattcttgtttattcaaaccagtcttctgagtacaaaattttaattaaattaaaactttcaacaagggatctcttggttctcgcatcaatgaaaaacgcagcgaaatgcgataagtaaggtgaattgcaaaattcatggaatcatcaaatctttgaacgcactttgcccccccgggaattccggggggcatgccggttcaagcgcctttacccccctcaggcccag-ttggttttggggccccgtcctcct-cgcggggggcgcgcctcgaaa-acctcggcggggtttctccaactt-cgaa-cgtataaaagttaaatcaaaacgt-ctc-aa-gag-cttgg-gggggcccctttgccgtcaaaacctttt--attttttc-aggttgacc---------------------------------------- 'Dothiora buxi NR_155059.1' ----------------------------gtacctgcggaaggatcattaaaagag--acagggcccttcgggg--cccga--------------cctcccaccctctgttgttataactacctcgttgctttggcgggacccg-cgaa-ggtcctc--ccgagcgcgccagtctcc--ggacaggcgagcgcccgccagagtccaaccaaactcttgtt--tttaaaccagtcgtctgagtataaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggcacccgtccgccg-aaaggcgggcgtgcctcgaag-acctcggcggggtttcatcaactt-cggg-cgtagtagagttaaatcaaaacgt-ctt-at-aag-attgg-tggggcctcattgccgtt-aaacctttt--attttttc-aggttgacctcgg-atcaggtagggatacccgctgaacttaagcatatc 'Dothiora cactacearum NR_155064.1' taaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcattaaaagag--acaggacccctcgggg--tccga--------------cctcccaccctctgttgttataactacctcgttgctttggcggga-ccg-cgag-ggtcctc--ccgagcgcgccagtctcc--ggacaggcgagcgcccgccagagtccaaccaaactcttgtt--ttcaaaccagtcgtctgagtacaaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggcacccgtccgccg-aaaggcgggcgtgcctcgaag-acctcggcggggtttcaccaactt-cggg-cgtagtagagttaaatcaaaacgt-cct-ac-aag-cttgg-tggcgcctcattgccgtt-aaacctttt--atttct-c-aggttgacctcgg-atcaggtagggata--------------------- 'Dothiora spartii NR_157479.1' -------------------------------------------------??????????????????????????????a--------------cctcccaccctctgtcgttataactacctcgttgctttggcggga-ccg-cgaa-ggtcctc--ccgagcgcgccagtctcc--ggacaggcgagcgcccgccagagtccaaccaaactcttgtt--tttaaacctttcggctgagtataaaatttgaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcatcaaaatgcgataagtaatgtgaattgcagaattcttggaatcatcaaatctttgaacgcacattgcgccccttgtgattcccaggggcatgcctgttcgagcgtcgttacaccactcaagcactgcttggtattgggcacccgtccgccg-aaaggcgggcgtgcctcgaag-acctcggcggggtttcaccaactt-cggg-cgtatcatagttaaatcaaaacgt-ctt-ac-aag-cttgg-aggggcctcattgccgtt-aaacctttt--atttta-c-aggttgacc---------------------------------------- Dothiora_aloidendri_CPC_38535 --------------------CCGTAGGTGAACCTGCGGAAGGATCATT-AAAGAG--TAAGGGTCTCTGG-C---CCGAA--------------CCTCCAACCCTCTGTCGTTATAACAACCTCGTTGCTTTGGCGGGA-CCG-CGAG-GGTCCTC--CCGAGCGCGCCAGTCTCA--GGACAGGCGAGCGCCCGCCGGAGTCCAACCAAACTCTTGT--TTTCGAACCAGTCGTCTGAGTAAAAACTTTTAATATAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACACCACTCAAGCACCGCTTGGTATTGGGCACCCGTCCGCCT-CACGGCGGGCGTGCCTCGAAG-ACCTCGGCGGGGTTTCTTCAACTT-CGGG-CGTAGTAGAGTTAAATCAAAACGT-CCA-AC-GAG-ATTGT-CGAGACCCCATCGCCGTT-AAACCACAAATTTTTTT-C-AGGTTGACCTCGG-ATCAGGTAGGGATACCCGCTGAACTTAAGCATATC Dothiora_europaea_MK460357.1 --------------------CCGTAGGTGAACCTGCGGAAGGATCATT-AAAGAG-TTAAGGGTCTCCGG-C---CCGAA--------------CCTCCAACCCTCTGTCGTTATAACTACCTCGTTGCTTTGGCGGGA-CCG-CGAA-GGTTCTC--CCGAGCGCGCCAGTCTCC--GGACAGGCGAGCGCCCGCCAGAGTCCAACCAAACTCTTGT--TTTTAAACCAGTCGTCTGAGTATAAAATTTTAATATAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCA-TCGTCCGTCG-AAAGGCGGGCGTGCCTCGAAG-ACCTCGGCGGGGTTTCACCAACTT-CGGG-CGTAGTA?????????????????????????????????????????????????????????????-------------------------------------------------------------- Dothiora_elliptica_KU728502.1 --------------------CCGTAGGTGAACCTGCGGAAGGATCATT-AAAGAG--TAAGGGTCTCTGG-C---CCGAA--------------CCTCCAACCCTCTGTTGTTATAACTACTTCGTTGCTTTGGCGGGA-CCG-CGAA-GGTTCTC--CCGAGCGCGCCGGTCTCC--GGACAGGCGAGCGCCCGCCAGAGTCTAACCAAACTCTTGT--CTTTAAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCA-TCGTCCGCCTTCACGGCGGGCGTGCCTCGAAG-ACCTCGGCGGGGTTTCTCCAACTT-CGGG-CGTAGTAGAGTTAAATCAAAACGT-CTT-AT-AAG-CTTGG-TGAGATCTCATTGCCGTA-AAACCTTTT--ATT------------------------------------------------------- Dothiora_pyrenophora_KY929145.1 ----------aacaaggtttccgtaggtgaacctgcggaaggatcatt-aaagag--taagggtctccgg-c---ccgaa--------------cctccaaccctctgtcgttataactacttcgttgctttggcggga-ccg-caaa-ggttctc--ccgagcgcgccggtcccc--ggacaggcgagcgcccgccagagtctaaccaaactcttgt---tttaaaccagtcgtctgagtataaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcaccgcttggtattgggca-tcgtccgccgtaaaggcgggcgtgcctcgaag-acctcggcggggtttctccaactt-cggg-cgtagtagagttaaatcaaaacgt-ctt-at-aag-cttgg-tgagatctcattgccgtt-aaaccttttatatattt-c-aggttgacctcgg-atcaggtagggatacccgctgaac----------- Dothiora_sorbi_KU728514.1 ---------------------CGTAGGTGAACCTGCGGAAGGATCATT-AAAGAG--TAAGGGTCTCTGG-C---CCGAA--------------CCTCCAACCCTCTGTCGTTATAACTACTTCGTTGCTTTGGCGGGA-CCG-CGAA-GGTTCTC--CCGAGCGCGCCAGTCTCC--GGACAGGCGAGCGCCCGCCAGAGTCTAACCAAACTCTTGT---TTTAAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACACCACTCAAGCACCGCTTGGTATTGGGCA-TCGTCCGCCGTAAAGGCGGGCGTGCCTCGAAG-ACCTCGGCGGGGTTTCTCCAACTT-CGGG-CGTAGTAGAGTTAAATCAAAACGT-CTT-AT-AAG-CTTGG-TGAGATCTCATTGCCGTT-AAACCTTTTATATTATT-C-AGGTTGACCTCGG-ATCAGGTAGGGATACCCGCTGAACTTAAGCATATC 'Dothiora prunorum NR_138366.1' --------------------------------------------catt-aaagag--taagggtctctgg-c---ccgaa--------------cctccaaccctctgttgttataactacttcgttgctttggcggga-ccg-caaa-ggttctc--ccgagcgcgccggtcttc--ggacaggcgagcgcccgccagagtctaaccaaactcttgt---tttaaaccagtcgtctgagtataaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggca-tcgtccgccgtaaaggcgggcgtgcctcgaag-acctcggcggggtttctccaactt-cggg-cgtagtagagttaaaacaaaacgt-ctt-at-aag-cttgg-tgagatctcattgccgtt-aaaccttttt-atattt-c-aggttgac----------------------------------------- 'Dothiora viburnicola NR_155058.1' --------gtaacaaggtttccgtaggtgaacctgcggaaggatcatt-aaagag--taagggtctccgg-c---ccgaa--------------cctccaaccctctgttgttataactacaccgttgctttggcggga-ccg-cgaa-ggtctccacccgagcgcgccggtctcc--ggacaggcgagcgcccgccagagtctaaccaaactcttgt---ttaaaaccagtcgtctgagtacaaacttttaattatattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggcacccgtccgtcg-aaagacgggcgtgcctcgaag-acctcggcggggtttctccaactt-cggg-cgtagtagagttaaatcaaaacgt-ctt-at-aag-cttgg-tgagatctcattgccgtt-aaaccttta--attttt-c-aggttgacctcgg-atcaggtagggatacccgctgaacttaagcatatc 'Dothiora agapanthi NR_155055.1' ---------taacaaggtttccgtaggtgaacctgcggaaggatcatt-aaagag--taagggtctctgg-c---ccgaa--------------cctccaaccctctgttgttataactacttcgttgctttggcggga-ccg-caaa-ggtttccactcgagcgcgccggtcttc--ggacaggcgagcgcccgccagagtctaaccaaactcttgt---tttaaaccagtcgtctgagtataaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggcactcgtccgtcg-aaagacgggcgtgcctcgaag-acctcggcggggtttctccaactt-cggg-cgtagtagagttaaatcaaaacgt-ctt-at-aag-cttgg-tgagatctcattgccgtt-aaaccttttt--tttt--c-aggttgacctcgg-atcaggtagggatacccgctgaacttaagca---- 'Dothiora bupleuricola NR_155056.1' -----------acaaggtttccgtaggtgaacctgcggaaggatcatt-aaagag--taagggtctctgg-c---ccgaa--------------cctccaaccctctgttgttataactacttcgttgctttggcggga-ccg-caa--ggtttcc-accgagcgcgccggtcctc--ggacaggcgagcgcccgccagagtctaaccaaactcttgt---tttaaaccagtcgtctgagtacaaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggcactcgtccgtcg-aaagacgggcgtgcctcgaag-acctcggcggggtttctccaactt-cggg-cgtagtagagttaaatcaaaacgt-ctt-at-aag-cttgg-tgagatctcattgccgtt-aaaccttttt-atttt--c-aggttgacctcgg-atcaggtagggatacccgctgaacttaagcatatc 'Dothiora phillyreae NR_155057.1' -------cgtaacaaggtttccgtaggtgaacctgcggaaggatcatt-aaagag--taagggtctctgg-c---ccgaa--------------cctccaaccctctgttgttataactacttcgttgctttggcggga-ccg-caa--ggtttcc-accgagcgcgccggtcttc--ggacaggcgagcgcccgccagagtctaaccaaactcttgt---tttaaaccagtcgtctgagtataaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggcactcgtccgtcg-aaagacgggcgtgcctcgaag-acctcggcggggtttctccaactt-cggg-cgtagtagagttaaatcaaaacgt-ctt-at-aag-cttgg-tgagatctcattgccgtt-aaaccttttt-atttt--c-aggttgacctcgg-atcaggtagggatacccgctgaacttaagcatatc 'Dothiora ceratoniae NR_155050.1' ----------------------------------gcggaaggatcatt-aaagag--taagggtctctgg-c---ccgaa--------------cctccaaccctctgttgttataactacttcgttgctttggcggga-ccg-caa--ggtttcc-accgagcgcgccggtcttc--ggacaggcgagcgcccgccagagtctaaccaaactcttgt---tttaaaccagtcgtctgagtataaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggcactcgtccgtcg-aaagacgggcgtgcctcgaag-acctcggcggggtttctccaactt-cggg-cgtagtagagttaaatcaaaacgt-ctt-at-aag-cttgg-tgagatctca-tgccgtt-aaaccttttt-ttttt--c-aggttgacctcgg-atcaggtagggatacccgctgaac----------- 'Endoconidioma rosae-hissaricae NR_157516.1' -------------------------------------------------??????????????????????????????a--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccg-cccg-gt-ct----ccgagcgcgtcggcctta--gggtcggcgagtgcccgccagagtccaaccaaactcttgt---attaaaccagtcgtctgagtataaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcatcgcttggtattgggca-tcgtccgtcg-aaaggcgggcgtgcctcgaag-acctcggcggggtttctccaactt-cggg-cgtagtagagttaaatcaaaacgt-ctt-at-aag-cttgg-tgagatctcattgccgtt-aaacctttt--atttttac-agg-tgacc---------------------------------------- Endoconidioma_euphorbiae_CPC_38551 ---------TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATT-AAAGAG--TTAGGGTCCTAGTGG---CCCAA--------------CCTCCAACCCTCTGTTGTTAAAACTACCTTGTTGCTTTGCCGGGA-CCG-TTCG-GT-CA---AACGAGCGCGTCGGCCCCCCGGGGTTGGCGAGCGCCCGGCAGAGTCCAACCAAACTCTTGT---ATTAAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCA-TCGTCCGTCG-AAAGGCGGGCGTGCCTCGAAG-ACCTCGGCGGGGTTTCTCCAACTT-CGGG-CGTAGTAGAGTTAAATCAAAACGT-CTT-AT-AAG-CTTGG-TGAGATCTCATTGCCGTT-AAACCTTTT--ATTTTTTC-AGGTTGACCTCGG-ATCAGGTAGGGATACCCGCTGAACTTAAGCATATC Endoconidioma_euphorbiae_CPC_38583 ---------TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATT-AAAGAG--TTAGGGTCCTAGTGG---CCCAA--------------CCTCCAACCCTCTGTTGTTAAAACTACCTTGTTGCTTTGCCGGGA-CCG-CTCC-GT-CA---AACGAGCGCGTCGGCCCCCCGGGGTTGGCGAGCGCCCGGCAGAGTCCAACCAAACTCTTGT---ATTAAACCAGTCGTCTGAGTATAAAATTTTAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACACCACTCAAGCACTGCTTGGTATTGGGCA-TCGTCCGTCG-AAAGGCGGGCGTGCCTCGAAG-ACCTCGGCGGGGTTTCTCCAACTT-CGGG-CGTAGTAGAGTTAAATCAAAACGT-CTT-AT-AAG-CTTGG-TGAGATCTCATTGCCGTT-AAACCTTTT--ATTTTTTC-AGGTTGACCTCGG-ATCAGGTAGGGATACCCGCTGAACTTAAGCATATC Cf._Endoconidioma_populi_MT738230.1 ------------------------------acctgcggaaggatcatt-aaagag--ttagggtcccagtgg---cccaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccg-ttcg-gt-ct----ccgagcgcgtcaaccccc--gggtcggcgagcgcccgccagagtccaaccaaactcttgt---attaaaccagtcgtctgagtataaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggca-tcgtccgtcg-aaaggcgggcgtgcctcgaag-acctcggcggggtttcaccgactt-cggg-cgtagtagagttaaatcaaaacgt-ctc-at-aag-cttga-tggagcctcattgccgtt-aaaccttttt-atttt-at-aggttgacctcgg-atcaggtagggatacccgctgaacttaagcatatc Endoconidioma_leucospermi_EU552113.1 taaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcatt-aaagag--ttagggtcctagtgg---cccaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccg-ttcg-gt-ct----ccgagcgcgttaacctcc--gggttggcgagcgcccgccagagtccaaccaaactcttgt---attaaaccagtcgtctgagtataaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggca-tcgtccgtcg-aaaggcgggcgtgcctcgaag-acctcggcggggtttctccaactt-cggg-cgtagtagagttaaatcaaaacgt-ctt-at-aag-cttgg-tgagatctcattgccgtt-aaaccttttt-atttt--c-aggttgacctcgg-atcaggtagggatacccgctgaacttaagcatatc Endoconidioma_leucospermi_AY720707.1 ---------------------------------------aggatcatt-aaagag--ttagggtcctagtgg---cccaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccg-ttcg-gt-ct----ccgagcgcgttaacctcc--gggttggcgagcgcccgccagagtccaaccaaactcttgt---attaaaccagtcgtctgagtataaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtgttgggca-tcgtccgtcg-aaaggcgggcgtgcctcgaag-acctcggcggggtttcttcaactt-cggg-cgtagtagagttaaatca-aacgt-ctt-at-aag-cttgg-tgagatctcattgccgtt-aaacctttt--attt---c-aggttgacctcgg-atcagg----------------------------- 'Endoconidioma populi NR_121303.1' taaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcatt-aaagag--ttagggtcccagtgg---cccaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccg-ttcg-gt-ct----ccgagcgcgttaaccttc--gggttggcgagcgcccgccagagtccaaccaaactcttgt---attaaaccagtcgtctgagtataaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggca-tcgtccgtcg-aaaggcgggcgtgcctcgaag-acctcggcggggtttctccaactt-cggg-cgtagtagagttaaatcaaaacgt-ctt-at-aag-cttgg-tgagatctcattgccgtt-aaaccttttt-atttt-ac-aggttgacctcgg-atcaggtag-------------------------- Endoconidioma_populi_KX180155.1 taaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcatt-aaagag--ttagggtcctagtgg---cccaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccg-ttcg-gt-ct----ccgagcgcgttaaccttc--gggttggcgagcgcccgccagagtccaaccaaactcttgt---attaaaccagtcgtctgagtataaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggca-tcgtccgtcg-aaaggcgggcgtgcctcgaag-acctcggcggggtttctccaactt-cggg-cgtagtagagttaaatcaaaacgt-ctt-at-aag-cttgg-tgagatctcattgccgtt-aaacctttt--attttt-c-aggttgacctcgg-atcaggtagggataccc------------------ Cf._Hormonema_carpetanum_AF182375.1 --------------------------------------------catt-aaagag--ttagggtcctagtgg---cccaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccg-ttcg-gt-ct----ccgagcgcgttaaccttc--gggttggcgagcgcccgccagagtccaaccaaactcttgt---attaaaccagtcgtctgagtataaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggca-tcgtccgtcg-aaaggcgggcgtgcctcgaagaacctcggcggggtttttccaactt-cggg-cgtagtaaagttaaatcaaaacgt-ctt-at-aag-cttgg-tgagatctcattgccgtt-aaacctttt--attttt-c-aggttgacctcgg-at--------------------------------- Cf._Hormonema_carpetanum_AY616201.1 --------------------------------------------catt-aaagag--ttagggtcctagtgg---cccaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccg-ttcg-gt-ct----ccgagcgcgttaaccttc--gggttggcgagcgcccgccagagtccaaccaaactcttgt---attaaaccagtcgtctgagtataaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggca-tcgtccgtcg-aaaggcgggcgtgcctcgaag-acctcggcggggtttctccaactt-cggg-cgtagtagagttaaatcaaaacgt-ctt-at-aag-cttgg-tgagatctcattgccgtt-aaacccttt--attttt-c-aggttgac----------------------------------------- Cf._Endoconidioma_populi_HM185487.1 --------------------------------------------catt-aaagag--ttagggtcctagtgg---cccaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccg-ttcg-gt-ct----ccgagcgcgttaaccctc--gggttggcgagcgcccgccagagtccaaccaaactcttgt---attaaaccagtcgtctgagtataaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcaccgcttggtattgggca-tcgtccgtcg-aaaggcgggcgtgcctcgaag-acctcggcggggtttctccaactt-cggg-cgtagtagagttaaatcaaaacgt-ctt-at-aag-cttgg-tgagatctcattgccgtt-aaacctttt--attttt-c-aggttgacctcgg-atcaggtagggataccc------------------ Cf._Hormonema_carpetanum_MK907726.1 taaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcatt-aaagag--ttagggtcctagtgg---cccaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccg-ttcg-gt-ct----ccgagcgcgttaaccctc--gggttggcgagcgcccgccagagtccaaccaaactcttgt---attaaaccagtcgtctgagtataaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcaccgcttggtattgggca-tcgtccgtcg-aaaggcgggcgtgcctcgaag-acctcggcggggtttctccaactt-cggg-cgtagtagagttaaatcaaaacgt-ctt-at-aag-cttgg-tgagatctcattgccgtt-aaacctttt--attttt-c-agg-tgacctcgg-atcaggtag-------------------------- Endoconidioma_carpetanum_MK782310.1 -----------------tttccgtaggtgaacctgcggaaggatcatt-aaagag--ttagggtcctagtgg---cccaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccg-ttcg-gt-ct----ccgagcgcgttaaccttc--gggttggcgagcgcccgccagagtccaaccaaactcttgt---attaaaccagtcgtctgagtataaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggca-tcgtccgtcg-aaaggcgggcgtgcctcgaag-acctcggcggggtttcatcaactt-cggg-cgtagtagagttaaatcaaaacgt-ctt-at-aag-cttgg-tgagatctcattgccgtt-aaacctttt--at-------------------------------------------------------- Endoconidioma_carpetanum_AY616204.1 --------------------------------------------catt-aaagag--ttagggtcctagtgg---cccaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccg-ttcg-gt-ct----ccgagcgcgttaaccttc--gggttggcgagcgcccgccagagtccaaccaaactcttgt---attaaaccagtcgtctgagtataaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggca-tcgtccgtcg-aaaggcgggcgtgcctcgaag-acctcggcggggtttcatcaactt-cggg-cgtagtagagttaaatcaaaacgt-ctt-at-aag-cttgg-tgagatctcattgccgtt-aaacctttt--attttt-c-aggttgac----------------------------------------- Endoconidioma_carpetanum_AY616205.1 --------------------------------------------catt-aaagag--ttagggtcctagtgg---cccaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccg-ttcg-gt-ct----ccgagcgcgttaaccttc--gggttggcgagcgcccgccagagtccaaccaaactcttgt---attaaaccagtcgtctgagtataaaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggca-tcgtccgtcg-aaaggcgggcgtgcctcgaag-acctcggcggggtttcatcaactt-cggg-cgtagtagagttaaatcaaaacgt-ctt-at-aag-cttgg-tgagatctcattgccgtt-aaacctttt--attttt-c-aggttgac----------------------------------------- Cf._Dothiora_mahoniae_MH862357.1 ------------------------------------------atcatt-aaagag--taagggtc-tctggc---ccg-a--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccg-ttcg-gt-ct-----cgagcgcgccggtcttc--ggattggcgagcgcccgccagagtccaaccaaactcttgt---attaaaccagtcgtctgagtataaaattttaatttaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggca-tcgtccgtcg-aaagacgggcgtgcctcgaag-acctcggcggggcctaaccggctt-cggg-cgtagtagagttaaatcg-aacgt-ctt-at-aag-tctgg-ttagaacccattgccgta-aaaccttt---attttt-ctaggttgacc---------------------------------------- Scleroconidioma_sphagnicola_KU516586.1 taaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcatt-aaagag--taagggtc-tctggc---ccgaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccg-ttcg-gt-ct-----cgagcgcgccggtcttc--ggattggcgagcgcccgccagagtccaaccaaactcttgt---attaaaccagtcgtctgagtataaaattttaatttaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggca-tcgtccgtcg-aaagacgggcgtgcctcgaag-acctcggcggggcctaaccggctt-cggg-cgtagtagagttaaatcg-aacgt-ctt-at-gag-tctgg-ttagaacccattgccgta-aaacctttt--atttt--ctaggttgacctcgg-atcag------------------------------ 'Scleroconidioma sphagnicola NR_121294.1' taaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcatt-aaagag--taagggtc-tctggc---ccgaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccg-ttcg-gt-ct-----cgagcgcgccggtcttc--ggattggcgagcgcccgccagagtccaaccaaactcttgt---attaaaccagtcgtctgagtataaaattttaatttaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggca-tcgtccgtcg-aaagacgggcgtgcctcgaag-acctcggcggggcctaaccggctt-cggg-cgtagtagagttaaatcg-aacgt-ctt-at-gag-tctgg-ttagaacccattgccgta-aaacctttt--atttt--ctaggttgacctcgg------------------------------------ 'Rhizosphaera macrospora NR_166003.1' --------gtaacaaggtttccgtaggtgaacctgcggaagggtcatt-aaagag--taagggtc-tccggc---ccgaa--------------cctccaaccctttgttgttaaaactaccttgttgctttggcggga-ccg-ttcg-gt-ct-----cgagcgcaccggtcttc--ggattggtgagcgcccgccagagtccaaccaaactcttgt---attaaaccagtcgtctgagtataaaattttaatttaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggcacccgtccgccg-aaaggcgggcgtgcctcgaag-acctcggcggggcctaaccggctt-cggg-cgtagtagagttaaatcaaaacgt-ctt-at-aag-tctgg-ttagaacccattgccgta-aaacctttt--attttttctaggttgacctcgg-atcaggtagRgatacccgctgaacttaagcatatc Rhizosphaera_macrospora_EU700368.1 -------cgtaacaaggtttccgtaggtgaacctgcggaaggatcatt-aaagag--taagggtc-tccggc---ccgaa--------------cctccaaccctttgttgttaaaactaccttgttgctttggcggga-ccg-ttcg-gt-ct-----cgagcgcaccggtcttc--ggattggtgagcgcccgccagagtccaaccaaactcttgt---attaaaccagtcgtctgagtataaaattttaatttaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggcacccgtccgccg-aaaggcgggcgtgcctcgaag-acctcggcggggcctaaccggctt-cggg-cgtagtagagttaaatcaaaacgt-ctt-at-aag-tctgg-ttagaacccattgccgta-aaacctttt--attttt-ctaggttgacctcgg-atcaggtagggataccc------------------ Rhizosphaera_macrospora_AF462431.1 taaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcatt-aaagag--taagggtc-tccggc---ccgaa--------------cctccaaccctttgttgttaaaactaccttgttgctttggcggga-ccg-ttcg-gt-ct-----cgagcgcaccggtcttc--ggattggtgagcgcccgccagagtccaaccaaactcttgt---attaaaccagtcgtctgagtataaaattttaatttaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcactgcttggtattgggcacccgtccgccg-aaaggcgggcgtgcctcgaag-acctcggcggggcctaaccggctt-cggg-cgtagtagagttaaatcaaaacgt-ctt-ataaag-tctgg-ttagaacccattgccgta-aaacctttt--attttttctaggttgacctccg-atcaagtagggatacccgctgaacttaagcatatc Neodothiora_populina_GU564978.1 --------------------------------------------------aagag--taagggtc-tatggc---ccgaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccgcttagtggttcc--accgagcgcgccggtcttc--ggattggcgagcgcccgccagagtccaaccaaactcttgtt-aatcaaaccagtcgtctgagttataaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcattgcttggtattgggcactcgtccgccg-caaggcgggcgtgcctcgaag-acctcggcggggcctatccggctt-cggg-cgtagtagagttaaatcg-aacgt-ctt-at-aag-t?tgggtttgaccccatagccgta-aaaccttt---tttttttcaaggttgacctcgg-atcaggtag-------------------------- Neodothiora_populina_GU564975.1 --------------------------------------------------aagag--taagggtc-tatggc---ccgaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccgcttagtggttcc--accgagcgcgccggtcttc--ggattggcgagcgcccgccagagtccaaccaaactcttgtt-aatcaaaccagtcgtctgagttataaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcattgcttggtattgggcactcgtccgccg-caaggcgggcgtgcctcgaag-acctcggcggggcctatccggctt-cggg-cgtagtagagttaaatcg-aacgt-ctt-at-aag-tctgggtttgaccccatagccgta-aaaccttt---tttttttcaaggttgacctcgg-atcaggtag-------------------------- Neodothiora_populina_GU564998.1 --------------------------------------------------aagag--taagggtc-tatggc---ccgaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccgcttagtggttcc--accgagcgcgccggtcttc--ggattggcgagcgcccgccagagtccaaccaaactcttgtt-aatcaaaccagtcgtctgagttataaatWttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcattgcttggtattgggcactcgtccgccg-caaggcgggcgtgcctcgaag-acctcggcggggcctatccggctt-cggg-cgtagtagagttaaatcg-aacgt-ctt-at-aag-tctgggtttgaccccatagccgta-aaaccttt---tttttttcaaggttgacctcgg-atcaggta--------------------------- Neodothiora_populina_CPC_39397 -----------acaaggtttccgtaggtgaacctgcggaaggatcatt-aaagag--taagggtc-tatggc---ccgaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccgcttagtggttcc--accgagcgcgccggtcttc--ggattggcgagcgcccgccagagtccaaccaaactcttgtt-aatcaaaccagtcgtctgagttataaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcattgcttggtattgggcactcgtccgccg-taaggcgggcgtgcctcgaag-acctcggcggggcctatccggctt-cggg-cgtagtagagttaaatcg-aacgt-ctt-at-aag-tctgggtttgaccccatagccgta-aaacctt----tttttttcaaggttgacctcgg-atcaggtagggatacccgctgaacttaagcatat- Neodothiora_populina_CPC_39398 ------------caaggtttccgtaggtgaacctgcggaaggatcatt-aaagag--taagggtc-tatggc---ccgaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccgcttagtggttcc--accgagcgcgccggtcttc--ggattggcgagcgcccgccagagtccaaccaaactcttgtt-aatcaaaccagtcgtctgagttataaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcattgcttggtattgggcactcgtccgccg-taaggcgggcgtgcctcgaag-acctcggcggggcctatccggctt-cggg-cgtagtagagttaaatcg-aacgt-ctt-at-aag-tctgggtttgaccccatagccgta-aaacctt----tttttttcaaggttgacctcgg-atcaggtagggatacccgctgaacttaagcatat- Neodothiora_populina_CPC_39399 ---------taacaaggtttccgtaggtgaacctgcggaaggatcatt-aaagag--taagggtc-tatggc---ccgaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccgcttagtggttcc--accgagcgcgccggtcttc--ggattggcgagcgcccgccagagtccaaccaaactcttgtt-aatcaaaccagtcgtctgagttataaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcattgcttggtattgggcactcgtccgccg-taaggcgggcgtgcctcgaag-acctcggcggggcctatccggctt-cggg-cgtagtagagttaaatcg-aacgt-ctt-at-aag-tctgggtttgaccccatagccgta-aaacctt----tttttttcaaggttgacctcgg-atcaggtagggatacccgctgaacttaagcata-- Neodothiora_populina_GU564977.1 --------------------------------------------------aagag--taagggtc-tatggc---ccgaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccgcttagtggttcc--accgagcgcgccggtcttc--ggattggcgagcgcccgccagagtccaaccaaactcttgtt-aatcaaaccagtcgtctgagttataaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcattgcttggtattgggcactcgtccgccg-caaggcgggcgtgcctcgaag-acctcggcggggcctatccggctt-cggg-cgtagtagagttaaatcg-aacgt-?tt-at-aagttctgggtttgaccccatagccgta-aaaccttt---tttttttcaaggttgacctcgg-atcaggtag-------------------------- Neodothiora_populina_GU564972.1 --------------------------------------------------aagag--taagggtc-tatggc---ccgaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccgcttagtggttcc--accgagcgcgccggtcttc--ggattggcgagcgcccgccagagtccaaccaaactcttgtt-aatcaaaccagtcgtctgagttataaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcattgcttggtattgggcactcgtccgccg-caaggcgggcgtgcctcgaag-acctcggcggggcctatccggctt-cggg-cgtagtagagttaaatcg-aacgt-cttcat-aagttctgggtttgaccccatagccgta-aaaccttt---tttttttcaaggttgacctcgg-atcaggtag-------------------------- Neodothiora_populina_GU564976.1 --------------------------------------------------aagag--taagggtc-tatggc---ccgaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccgcttagtggttcc--accgagcgcgccggtcttc--ggattggcgagcgcccgccagagtccaaccaaactcttgtt-aatcaaaccagtcgtctgagttataaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcattgcttggtattgggcactcgtccgccg-caaggcgggcgtgcctcgaag-acctcggcggggcctatccggctt-cggg-cgtagtagagttaaatcg-aacgt-ctt-at-aagttctgggtttgaccccatagccgta-aaaccttt---tttttttcaaggttgacctcgg-atcaggtag-------------------------- Neodothiora_populina_GU564973.1 --------------------------------------------------aagag--taagggtc-tatggc---ccgaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccgcttagtggttcc--accgagcgcgccggtcttc--ggattggcgagcgcccgccagagtccaaccaaactcttgtt-aatcaaaccagtcgtctgagttataaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcattgcttggtattgggcacttgtccgccg-caaggcgggcgtgcctcgaag-acctcggcggggcctatccggctt-cggg-cgtagtagagttaaatcg-aacgt-?tt-at-aagttctgggtttgaccccatagccgta-aaaccttt---tttttttcaaggttgacctcggaatcaggtagg------------------------- Neodothiora_populina_GU564968.1 --------------------------------------------------aagag--taagggtc-tatggc---ccgaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccgcttagtggttcc--accgagcgcgccggtcttc--ggattggcgagcgcccgccagagtccaaccaaactcttgtt-aatcaaaccagtcgtctgagttataaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcattgcttggtattgggcacttgtccgccg-caaggcgggcgtgcctcgaag-acctcggcggggcctatccggctt?cggggcgtagtagagttaaatcg-aacgttctt-at-aagttctgggtttgaccccatagccgta-aaaccttt---tttttttcaaggttgacctcgg-atcaggta--------------------------- Neodothiora_populina_GU564983.1 --------------------------------------------------aagag--taagggtc-tatggc---ccgaa--------------cctccaaccctctgttgttaaaactaccttgttgctttggcggga-ccgcttagtggttcc--accgagcgcgccggtcttc--ggattggcgagcgcccgccagagtccaaccaaactcttgtt-aatcaaaccagtcgtctgagttataaattttaattaaattaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaccactcaagcattgcttggtattgggcacttgtccgccg-caaggcgggcgtgcct?gaag-acctcggcggggcctatccggctt-cggg-cgtagtagagttaaatcg-aacgttctt-at-aagttctgggtttgaccccatagccgta-aaaccttt---tttttttcaaggttgacctcgg-atcaggtagg------------------------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 643; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 643; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 643; END; BEGIN TREES; Title 'Fig. Fungal Planet 1141 - Unpublished Bayesian tree from the Neodothiora ITS alignment'; ID 017ba0e895ba28; LINK Taxa = Taxa; TRANSLATE [0] 1 Dothidea_sambuci_NR_111220.1, [1] 2 'Dothiora cytisi NR_148094.1', [2] 3 'Neophaeocryptopus spartii NR_157480.1', [3] 4 'Dothiora buxi NR_155059.1', [4] 5 'Dothiora cactacearum NR_155064.1', [5] 6 'Dothiora spartii NR_157479.1', [6] 7 Dothiora_aloidendri_CPC_38535, [7] 8 Dothiora_europaea_MK460357.1, [8] 9 Dothiora_elliptica_KU728502.1, [9] 10 Dothiora_pyrenophora_KY929145.1, [10] 11 Dothiora_sorbi_KU728514.1, [11] 12 'Dothiora prunorum NR_138366.1', [12] 13 'Dothiora viburnicola NR_155058.1', [13] 14 'Dothiora agapanthi NR_155055.1', [14] 15 'Dothiora bupleuricola NR_155056.1', [15] 16 'Dothiora phillyreae NR_155057.1', [16] 17 'Dothiora ceratoniae NR_155050.1', [17] 18 'Endoconidioma rosae-hissaricae NR_157516.1', [18] 19 Endoconidioma_euphorbiae_CPC_38551, [19] 20 Endoconidioma_euphorbiae_CPC_38583, [20] 21 Cf._Endoconidioma_populi_MT738230.1, [21] 22 Endoconidioma_leucospermi_EU552113.1, [22] 23 Endoconidioma_leucospermi_AY720707.1, [23] 24 'Endoconidioma populi NR_121303.1', [24] 25 Endoconidioma_populi_KX180155.1, [25] 26 Cf._Hormonema_carpetanum_AF182375.1, [26] 27 Cf._Hormonema_carpetanum_AY616201.1, [27] 28 Cf._Endoconidioma_populi_HM185487.1, [28] 29 Cf._Hormonema_carpetanum_MK907726.1, [29] 30 Endoconidioma_carpetanum_MK782310.1, [30] 31 Endoconidioma_carpetanum_AY616204.1, [31] 32 Endoconidioma_carpetanum_AY616205.1, [32] 33 Cf._Dothiora_mahoniae_MH862357.1, [33] 34 Scleroconidioma_sphagnicola_KU516586.1, [34] 35 'Scleroconidioma sphagnicola NR_121294.1', [35] 36 'Rhizosphaera macrospora NR_166003.1', [36] 37 Rhizosphaera_macrospora_EU700368.1, [37] 38 Rhizosphaera_macrospora_AF462431.1, [38] 39 Neodothiora_populina_GU564978.1, [39] 40 Neodothiora_populina_GU564975.1, [40] 41 Neodothiora_populina_GU564998.1, [41] 42 Neodothiora_populina_CPC_39397, [42] 43 Neodothiora_populina_CPC_39398, [43] 44 Neodothiora_populina_CPC_39399, [44] 45 Neodothiora_populina_GU564977.1, [45] 46 Neodothiora_populina_GU564972.1, [46] 47 Neodothiora_populina_GU564976.1, [47] 48 Neodothiora_populina_GU564973.1, [48] 49 Neodothiora_populina_GU564968.1, [49] 50 Neodothiora_populina_GU564983.1; TREE 'Fig. Fungal Planet 1141 - Unpublished Bayesian tree from the Neodothiora ITS alignment' = (1:0.04351221,((((42:0.001292942,43:0.001245688,44:0.001290032):0.002766143,45:0.00125067,(48:0.001254154,49:0.001303696,50:0.00123654):0.002974066,39:0.001268358,40:0.0012036,41:0.001221768,46:0.001187804,47:0.001161313):0.02910832,((33:0.001301499,(34:0.00123566,35:0.001298886):0.00307106):0.004834602,(36:0.001248038,37:0.001261877,38:0.001312444):0.01264241):0.008098325):0.03223022,(18:0.01552174,(21:0.02381808,24:0.002723922,(30:0.001208433,31:0.001230888,32:0.00125087):0.004357294,(28:0.00124715,29:0.001211147):0.004721125,25:0.001287729,26:0.004959057,27:0.00311975,22:0.00163069,23:0.00500419):0.005964853,(19:0.00143503,20:0.004558123):0.01213172):0.01418954):0.0195575,((4:0.006282289,5:0.01498451,6:0.04416621):0.01261455,((((((13:0.02159191,14:0.003359962):0.00302288,15:0.00436409,16:0.001228382,17:0.00125442):0.008120722,12:0.00315407):0.003773067,10:0.006228877,9:0.01037705):0.004435394,11:0.002017372):0.007723069,(7:0.05164157,8:0.007294128):0.01102701):0.01677491,(2:0.0152726,3:0.1228349):0.06086716):0.0169258); END; BEGIN TREES; Title 'Fig. Fungal Planet 1141 - First of 414 equally most parsimonious trees from the Neodothiora ITS alignment'; ID 017ba0e8c5b029; LINK Taxa = Taxa; TRANSLATE [0] 1 Dothidea_sambuci_NR_111220.1, [1] 2 'Dothiora cytisi NR_148094.1', [2] 3 'Neophaeocryptopus spartii NR_157480.1', [3] 4 'Dothiora buxi NR_155059.1', [4] 5 'Dothiora cactacearum NR_155064.1', [5] 6 'Dothiora spartii NR_157479.1', [6] 7 Dothiora_aloidendri_CPC_38535, [7] 8 Dothiora_europaea_MK460357.1, [8] 9 Dothiora_elliptica_KU728502.1, [9] 10 Dothiora_pyrenophora_KY929145.1, [10] 11 Dothiora_sorbi_KU728514.1, [11] 12 'Dothiora prunorum NR_138366.1', [12] 13 'Dothiora viburnicola NR_155058.1', [13] 14 'Dothiora agapanthi NR_155055.1', [14] 15 'Dothiora bupleuricola NR_155056.1', [15] 16 'Dothiora phillyreae NR_155057.1', [16] 17 'Dothiora ceratoniae NR_155050.1', [17] 18 'Endoconidioma rosae-hissaricae NR_157516.1', [18] 19 Endoconidioma_euphorbiae_CPC_38551, [19] 20 Endoconidioma_euphorbiae_CPC_38583, [20] 21 Cf._Endoconidioma_populi_MT738230.1, [21] 22 Endoconidioma_leucospermi_EU552113.1, [22] 23 Endoconidioma_leucospermi_AY720707.1, [23] 24 'Endoconidioma populi NR_121303.1', [24] 25 Endoconidioma_populi_KX180155.1, [25] 26 Cf._Hormonema_carpetanum_AF182375.1, [26] 27 Cf._Hormonema_carpetanum_AY616201.1, [27] 28 Cf._Endoconidioma_populi_HM185487.1, [28] 29 Cf._Hormonema_carpetanum_MK907726.1, [29] 30 Endoconidioma_carpetanum_MK782310.1, [30] 31 Endoconidioma_carpetanum_AY616204.1, [31] 32 Endoconidioma_carpetanum_AY616205.1, [32] 33 Cf._Dothiora_mahoniae_MH862357.1, [33] 34 Scleroconidioma_sphagnicola_KU516586.1, [34] 35 'Scleroconidioma sphagnicola NR_121294.1', [35] 36 'Rhizosphaera macrospora NR_166003.1', [36] 37 Rhizosphaera_macrospora_EU700368.1, [37] 38 Rhizosphaera_macrospora_AF462431.1, [38] 39 Neodothiora_populina_GU564978.1, [39] 40 Neodothiora_populina_GU564975.1, [40] 41 Neodothiora_populina_GU564998.1, [41] 42 Neodothiora_populina_CPC_39397, [42] 43 Neodothiora_populina_CPC_39398, [43] 44 Neodothiora_populina_CPC_39399, [44] 45 Neodothiora_populina_GU564977.1, [45] 46 Neodothiora_populina_GU564972.1, [46] 47 Neodothiora_populina_GU564976.1, [47] 48 Neodothiora_populina_GU564973.1, [48] 49 Neodothiora_populina_GU564968.1, [49] 50 Neodothiora_populina_GU564983.1; TREE 'Fig. Fungal Planet 1141 - First of 414 equally most parsimonious trees from the Neodothiora ITS alignment' = (((((4:4.0,(5:5.0,6:19.0):3.0):8.0,(((((13:11.0,14:1.0):2.0,(15:2.0,16:0.0,17:1.0):1.0):7.0,12:1.0):2.0,((10:3.0,11:1.0):2.0,9:5.0):0.0):5.0,(7:17.0,8:4.0):15.0):10.0):6.0,(2:13.0,3:49.0):22.0):10.0,((((42:0.0,43:0.0,44:0.0):1.0,(45:0.0,(48:0.0,(49:1.0,50:0.0):1.0):1.0,46:1.0,47:0.0):1.0,39:0.0,40:0.0,41:0.0):20.0,((33:1.0,(34:0.0,35:0.0):1.0):3.0,(36:0.0,37:0.0,38:1.0):7.0):5.0):16.0,(18:7.0,((21:10.0,((24:1.0,(30:0.0,31:0.0,32:0.0):2.0,(28:0.0,29:0.0):2.0,25:0.0,26:3.0,27:1.0):1.0,22:0.0,23:3.0):2.0):2.0,(19:0.0,20:2.0):7.0):2.0):8.0):8.0):14.0,1:13.0):0.0; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1630512700381; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5713604250297419881; tell It; setDefaultOrder 49 14 15 0 1 2 9 10 12 8 11 13 3 4 5 6 7 34 45 46 35 47 48 36 39 43 44 38 40 37 41 42 28 29 30 31 32 33 23 24 25 16 17 18 19 26 27 20 21 22; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8298366898997553036; mqVersion 370; checksumv 0 3 3371082727 null getNumChars 643 numChars 643 getNumTaxa 50 numTaxa 50 short true bits 3458764513820540943 states 15 sumSquaresStatesOnly 602480.0 sumSquares -1.2838933875301848E22 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 382; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1384 1141; setLocation 744 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #5713604250297419881 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #5713604250297419881; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 393; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1002 1069; setLocation 744 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #5713604250297419881 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 2; setTreeBlockID 017ba0e8c5b029; toggleUseWeights off; endTell; setAssignedID 3535.1630492219073.2173380008011677795; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1002 1069; setLocation 744 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientRight; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; setSelectedTaxonHighlightMode 1; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; setTaxonNameStyler #mesquite.trees.NoColorForTaxon.NoColorForTaxon; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(1:13.0,(((2:13.0,3:49.0):22.0,((4:4.0,(5:5.0,6:19.0):3.0):8.0,((7:17.0,8:4.0):15.0,((9:5.0,(10:3.0,11:1.0):2.0):0.0,(12:1.0,((13:11.0,14:1.0):2.0,(15:2.0,16:0.0,17:1.0):1.0):7.0):2.0):5.0):10.0):6.0):10.0,((18:7.0,((19:0.0,20:2.0):7.0,(21:10.0,(22:0.0,23:3.0,(24:1.0,25:0.0,26:3.0,27:1.0,(28:0.0,29:0.0):2.0,(30:0.0,31:0.0,32:0.0):2.0):1.0):2.0):2.0):2.0):8.0,(((33:1.0,(34:0.0,35:0.0):1.0):3.0,(36:0.0,37:0.0,38:1.0):7.0):5.0,(39:0.0,40:0.0,41:0.0,(42:0.0,43:0.0,44:0.0):1.0,(45:0.0,46:1.0,47:0.0,(48:0.0,(49:1.0,50:0.0):1.0):1.0):1.0):20.0):16.0):8.0):14.0):0.0;'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8298366898997553036 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1002 1069; setLocation 744 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleColorOnlyTaxonNames off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;