#NEXUS [written Tue Dec 01 13:00:08 CET 2020 by Mesquite version 3.61 (build 927) at 2017-15-inch-MacBook-Pro.local/192.168.2.86] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=44; TAXLABELS Botryosphaeria_agaves_CBS_133992 Botryosphaeria_agaves_CBS_141505 Botryosphaeria_agaves_MFLUCC_10_0051 Botryosphaeria_corticis_ATCC_22927 Botryosphaeria_corticis_CBS_119047 Botryosphaeria_corticis_CBS_119048 Botryosphaeria_dothidea_CBS_110302 Botryosphaeria_dothidea_CBS_110484 Botryosphaeria_dothidea_CBS_115476 Botryosphaeria_dothidea_CBS_121557 Botryosphaeria_dothidea_CBS_123530 Botryosphaeria_dothidea_CERC_1976 Botryosphaeria_dothidea_CMW_25215 Botryosphaeria_dothidea_CMW_7999 Botryosphaeria_dothidea_CPC_29048 Botryosphaeria_dothidea_DAR_78224 Botryosphaeria_dothidea_MUCC_500 Botryosphaeria_dothidea_MUCC_501 Botryosphaeria_dothidea_MUCC_503 Botryosphaeria_dothidea_PD_296 Botryosphaeria_dothidea_was_sinensis_CGMCC_3_17723 Botryosphaeria_dothidea_was_sinensis_CGMCC_3_17724 Botryosphaeria_dothidea_was_wangensis_CERC_2298 Botryosphaeria_dothidea_was_wangensis_CERC_2299 Botryosphaeria_fabicerciana_CBS_127193 Botryosphaeria_fabicerciana_CBS_127194 Botryosphaeria_fabicerciana_was_fusispora_CBS_118831 Botryosphaeria_fabicerciana_was_fusispora_CERC_2006 Botryosphaeria_fabicerciana_was_fusispora_CERC_2930 Botryosphaeria_fabicerciana_was_fusispora_CERC_2949 Botryosphaeria_fabicerciana_was_fusispora_CERC_3441 Botryosphaeria_fabicerciana_was_fusispora_CERC_3469 Botryosphaeria_fabicerciana_was_fusispora_CPC_29629 Botryosphaeria_fabicerciana_was_fusispora_MFLUCC_10_0098 Botryosphaeria_fabicerciana_was_fusispora_MFLUCC_11_0507 Botryosphaeria_kuwatsukai_was_rosaceae_CGMCC_3_18007 Botryosphaeria_kuwatsukai_was_rosaceae_CGMCC_3_18008 Botryosphaeria_qingyuanensis_CERC_2946 Botryosphaeria_qingyuanensis_CERC_2947 Botryosphaeria_ramosa_CBS_122069 Botryosphaeria_ramosa_was_pseudoramosa_CERC_1999 Botryosphaeria_ramosa_was_pseudoramosa_CERC_2001 Botryosphaeria_scharifii_CBS_124703 Cophinforma_eucalypti_CBS_134651 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=387; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Botryosphaeria_agaves_CBS_133992 TTGCCAAAACACACCCGCTCCCACGCCCCCGCTGATGCGAATCGACACCACAGGCAGACCATCTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTAAGTCTGCATCGTTCTCAACGCGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAATACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTTGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_agaves_CBS_141505 TTGCCAAAACACACCCGCTCCCACGCCCCCGCTGATGCGAATCGACACCACAGGCAGACCATCTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTAAGTCTGCATCGTTCTCAACGCGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAATACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTTGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_agaves_MFLUCC_10_0051 TTGCCAAAACACACCCGCTCCCACGCCCCCGCTGATGCGAATCGACACCACAGGCAGACCATCTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTAAGTCTGCATCGTTCTCAACGCGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAATACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTTGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_corticis_ATCC_22927 TTGCTAAA--ACACCCGCTCCCGCGCCCCCGCTAATGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTAGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCATCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTTGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_corticis_CBS_119047 TTGCTAAA--ACACCCGCTCCCGCGCCCCCGCTAATGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTAGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCATCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTTGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_corticis_CBS_119048 TTGCTAAA--ACACCCGCTCCCGCGCCCCCGCTAATGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTAGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCATCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTTGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_dothidea_CBS_110302 TTGCCAAA--ACACCCGCTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_dothidea_CBS_110484 TTGCCAAA--ACACCCGCTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_dothidea_CBS_115476 TTGCCAAA--ACACCCGCTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_dothidea_CBS_121557 TTGCCAAA--ACACCCGCTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_dothidea_CBS_123530 TTGCCAAA--ACACCCGCTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_dothidea_CERC_1976 TTGCCAAA--ACACCCGCTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_dothidea_CMW_25215 TTGCCAAA--ACACCCGCTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_dothidea_CMW_7999 TTGCCAAA--ACACCCGCTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_dothidea_CPC_29048 TTGCCAAA--ACACCCGCTCCCGCGCCCCCGCTAACGCGAATCGACACTACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACATGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_dothidea_DAR_78224 TTGCCAAA--ACACCCGCTCCCGCGCCCCCGCTAACGCGAATCGACACTACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACATGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_dothidea_MUCC_500 TTGCCAAA--ACACCCGCTCCCGCGCCCCCGCTAACGCGAATCGACACTACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACATGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_dothidea_MUCC_501 TTGCCAAA--ACACCCGCTCCCGCGCCCCCGCTAACGCGAATCGACACTACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACATGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_dothidea_MUCC_503 TTGCCAAA--ACACCCGCTCCCGCGCCCCCGCTAACGCGAATCGACACTACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACATGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_dothidea_PD_296 TTGCCAAA--ACACCCGCTCCCGCGCCCCCGCTAACGCGAATCGACACTACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACATGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_dothidea_was_sinensis_CGMCC_3_17723 ????????????????GCTCC-GCG-CCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_dothidea_was_sinensis_CGMCC_3_17724 ????????????????GCTCC-GCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_dothidea_was_wangensis_CERC_2298 TTGCCAAA--ACACCCGCTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCTGACAACTTCGTCTTCGGTCA Botryosphaeria_dothidea_was_wangensis_CERC_2299 TTGCCAAA--ACACCCGCTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCTGACAACTTCGTCTTCGGTCA Botryosphaeria_fabicerciana_CBS_127193 TTGCCAAA--ACACCCGCTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_fabicerciana_CBS_127194 TTGCCAAA--ACACCCGCTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_fabicerciana_was_fusispora_CBS_118831 TTGCCAAA--ACACCCGGTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_fabicerciana_was_fusispora_CERC_2006 TTGCCAAA--ACACCCGGTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_fabicerciana_was_fusispora_CERC_2930 TTGCCAAA--ACACCCGGTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_fabicerciana_was_fusispora_CERC_2949 TTGCCAAA--ACACCCGGTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_fabicerciana_was_fusispora_CERC_3441 TTGCCAAA--ACACCCGGTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_fabicerciana_was_fusispora_CERC_3469 TTGCCAAA--ACACCCGGTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_fabicerciana_was_fusispora_CPC_29629 TTGCCAAA--ACACCCGGTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_fabicerciana_was_fusispora_MFLUCC_10_0098 TTGCCAAA--ACACCCGGTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_fabicerciana_was_fusispora_MFLUCC_11_0507 TTGCCAAA--ACACCCGGTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_kuwatsukai_was_rosaceae_CGMCC_3_18007 ????????????????GCTCC-GCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_kuwatsukai_was_rosaceae_CGMCC_3_18008 ??????????????????????????????????????????CGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_qingyuanensis_CERC_2946 TTGCCAAA--ACACCCGCTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_qingyuanensis_CERC_2947 TTGCCAAA--ACACCCGCTCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTTCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_ramosa_CBS_122069 TTGCCAAAACACACCTGCTCCCGCGCCCCCGCTAATGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCCGGCGTGTAAGTCTGCATCGTTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATCAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_ramosa_was_pseudoramosa_CERC_1999 TTGCCAAAACACACCTGCTCCCGCGCCCCCGCTAATGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCCGGCGTGTAAGTCTGCATCGTTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATCAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_ramosa_was_pseudoramosa_CERC_2001 TTGCCAAAACACACCTGCTCCCGCGCCCCCGCTAATGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCCGGCGTGTAAGTCTGCATCGTTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAACGTCTATTTCAACGAGGTACTCTCTCACTAATCAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Botryosphaeria_scharifii_CBS_124703 TTGCCAAAACACACCTGCCCCCGCGCCCCCGCTAACGCGAATCGACACCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCCGGCGTGTAAGTCTGCATCATTCTCAGCGTGGG-AGAACATCAATGACTAAACTGTAGCAGCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAACGTTTATTTCAACGAGGTACTCTCTCACTAATCAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACGATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCA Cophinforma_eucalypti_CBS_134651 TTGCCAAAACACACCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACAACAGGCAAACCATCTCTGGCGAGCATGGCCTGGACGGCTCCGGCGTGTAAGTCTGCGGCATTCTCAGCGTGAACGGGATCGCAATGACTAAACGATAGCAGCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTAGACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCTGTCCTCGTTGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGCCA ; END; BEGIN mrbayes; outgroup Cophinforma_eucalypti_CBS_134651_T; charset locus1 = 1 -387; partition AllLoci = 1 : locus1; log start filename = BotryosphaeriaTUBMB.log; END; BEGIN mrbayes; set partition = AllLoci; prset applyto = ( 1 ) statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); Lset applyto = ( 1 ) nst = 2 rates = propinv; unlink shape = ( all ) pinvar = ( all ) statefreq = ( all ) revmat = ( all ); mcmcp ngen = 1000000000 nchains = 4 printfreq = 10 temp = 0.2 samplefreq = 10 savebrlens = yes stoprule = yes stopval = 0.01 Relburnin = yes BurninFrac = 0.25 filename = BotryosphaeriaTUBMB; mcmc; sump; sumt; END; BEGIN TREES; Title 'Trees from "S1C_BotryosphaeriaTUBMB.nexus"'; ID 01761de7ef8027; LINK Taxa = Taxa; TRANSLATE [0] 1 Botryosphaeria_agaves_CBS_133992, [1] 2 Botryosphaeria_agaves_CBS_141505, [2] 3 Botryosphaeria_agaves_MFLUCC_10_0051, [3] 4 Botryosphaeria_corticis_ATCC_22927, [4] 5 Botryosphaeria_corticis_CBS_119047, [5] 6 Botryosphaeria_corticis_CBS_119048, [6] 7 Botryosphaeria_dothidea_CBS_110302, [7] 8 Botryosphaeria_dothidea_CBS_110484, [8] 9 Botryosphaeria_dothidea_CBS_115476, [9] 10 Botryosphaeria_dothidea_CBS_121557, [10] 11 Botryosphaeria_dothidea_CBS_123530, [11] 12 Botryosphaeria_dothidea_CERC_1976, [12] 13 Botryosphaeria_dothidea_CMW_25215, [13] 14 Botryosphaeria_dothidea_CMW_7999, [14] 15 Botryosphaeria_dothidea_CPC_29048, [15] 16 Botryosphaeria_dothidea_DAR_78224, [16] 17 Botryosphaeria_dothidea_MUCC_500, [17] 18 Botryosphaeria_dothidea_MUCC_501, [18] 19 Botryosphaeria_dothidea_MUCC_503, [19] 20 Botryosphaeria_dothidea_PD_296, [20] 21 Botryosphaeria_dothidea_was_sinensis_CGMCC_3_17723, [21] 22 Botryosphaeria_dothidea_was_sinensis_CGMCC_3_17724, [22] 23 Botryosphaeria_dothidea_was_wangensis_CERC_2298, [23] 24 Botryosphaeria_dothidea_was_wangensis_CERC_2299, [24] 25 Botryosphaeria_fabicerciana_CBS_127193, [25] 26 Botryosphaeria_fabicerciana_CBS_127194, [26] 27 Botryosphaeria_fabicerciana_was_fusispora_CBS_118831, [27] 28 Botryosphaeria_fabicerciana_was_fusispora_CERC_2006, [28] 29 Botryosphaeria_fabicerciana_was_fusispora_CERC_2930, [29] 30 Botryosphaeria_fabicerciana_was_fusispora_CERC_2949, [30] 31 Botryosphaeria_fabicerciana_was_fusispora_CERC_3441, [31] 32 Botryosphaeria_fabicerciana_was_fusispora_CERC_3469, [32] 33 Botryosphaeria_fabicerciana_was_fusispora_CPC_29629, [33] 34 Botryosphaeria_fabicerciana_was_fusispora_MFLUCC_10_0098, [34] 35 Botryosphaeria_fabicerciana_was_fusispora_MFLUCC_11_0507, [35] 36 Botryosphaeria_kuwatsukai_was_rosaceae_CGMCC_3_18007, [36] 37 Botryosphaeria_kuwatsukai_was_rosaceae_CGMCC_3_18008, [37] 38 Botryosphaeria_qingyuanensis_CERC_2946, [38] 39 Botryosphaeria_qingyuanensis_CERC_2947, [39] 40 Botryosphaeria_ramosa_CBS_122069, [40] 41 Botryosphaeria_ramosa_was_pseudoramosa_CERC_1999, [41] 42 Botryosphaeria_ramosa_was_pseudoramosa_CERC_2001, [42] 43 Botryosphaeria_scharifii_CBS_124703, [43] 44 Cophinforma_eucalypti_CBS_134651; TREE Fig._S1C._Bayesian_phylogeny_of_the_Botryosphaeria_tub2_alignment. = (44:0.02109541,(1:0.0006295978,2:0.000653791,3:0.0006299953):0.008612793,((43:0.002975907,(40:0.0007183398,41:0.0006841658,42:0.0006028241):0.002093385):0.002541259,((16:0.0006389352,17:0.0006836879,18:0.0006880139,19:0.0006722901,20:0.000693221,15:0.0006198606):0.002524115,11:0.0007091265,7:0.0007194085,8:0.0007679989,12:0.0006779908,14:0.0007041167,9:0.0007650437,10:0.0006841313,(23:0.0006525458,24:0.0007617374):0.001599789,21:0.0006642267,22:0.0007465467,38:0.0006616012,39:0.0006980297,(4:0.0006269154,5:0.0007420702,6:0.0007044037):0.005518331,36:0.0006453322,37:0.0007277491,25:0.0006734838,(28:0.0006330715,29:0.0006975658,30:0.0007522829,31:0.0007321945,32:0.0007379898,27:0.0006174516,33:0.00067236,34:0.0007817439,35:0.0006628982):0.001699662,13:0.0006601687,26:0.0007191895):0.002676052):0.002308071); END; BEGIN TREES; Title 'Trees from "S1C_BotryosphaeriaTUBMB.nexus"'; ID 01761de7ef8428; LINK Taxa = Taxa; TRANSLATE [0] 1 Botryosphaeria_agaves_CBS_133992, [1] 2 Botryosphaeria_agaves_CBS_141505, [2] 3 Botryosphaeria_agaves_MFLUCC_10_0051, [3] 4 Botryosphaeria_corticis_ATCC_22927, [4] 5 Botryosphaeria_corticis_CBS_119047, [5] 6 Botryosphaeria_corticis_CBS_119048, [6] 7 Botryosphaeria_dothidea_CBS_110302, [7] 8 Botryosphaeria_dothidea_CBS_110484, [8] 9 Botryosphaeria_dothidea_CBS_115476, [9] 10 Botryosphaeria_dothidea_CBS_121557, [10] 11 Botryosphaeria_dothidea_CBS_123530, [11] 12 Botryosphaeria_dothidea_CERC_1976, [12] 13 Botryosphaeria_dothidea_CMW_25215, [13] 14 Botryosphaeria_dothidea_CMW_7999, [14] 15 Botryosphaeria_dothidea_CPC_29048, [15] 16 Botryosphaeria_dothidea_DAR_78224, [16] 17 Botryosphaeria_dothidea_MUCC_500, [17] 18 Botryosphaeria_dothidea_MUCC_501, [18] 19 Botryosphaeria_dothidea_MUCC_503, [19] 20 Botryosphaeria_dothidea_PD_296, [20] 21 Botryosphaeria_dothidea_was_sinensis_CGMCC_3_17723, [21] 22 Botryosphaeria_dothidea_was_sinensis_CGMCC_3_17724, [22] 23 Botryosphaeria_dothidea_was_wangensis_CERC_2298, [23] 24 Botryosphaeria_dothidea_was_wangensis_CERC_2299, [24] 25 Botryosphaeria_fabicerciana_CBS_127193, [25] 26 Botryosphaeria_fabicerciana_CBS_127194, [26] 27 Botryosphaeria_fabicerciana_was_fusispora_CBS_118831, [27] 28 Botryosphaeria_fabicerciana_was_fusispora_CERC_2006, [28] 29 Botryosphaeria_fabicerciana_was_fusispora_CERC_2930, [29] 30 Botryosphaeria_fabicerciana_was_fusispora_CERC_2949, [30] 31 Botryosphaeria_fabicerciana_was_fusispora_CERC_3441, [31] 32 Botryosphaeria_fabicerciana_was_fusispora_CERC_3469, [32] 33 Botryosphaeria_fabicerciana_was_fusispora_CPC_29629, [33] 34 Botryosphaeria_fabicerciana_was_fusispora_MFLUCC_10_0098, [34] 35 Botryosphaeria_fabicerciana_was_fusispora_MFLUCC_11_0507, [35] 36 Botryosphaeria_kuwatsukai_was_rosaceae_CGMCC_3_18007, [36] 37 Botryosphaeria_kuwatsukai_was_rosaceae_CGMCC_3_18008, [37] 38 Botryosphaeria_qingyuanensis_CERC_2946, [38] 39 Botryosphaeria_qingyuanensis_CERC_2947, [39] 40 Botryosphaeria_ramosa_CBS_122069, [40] 41 Botryosphaeria_ramosa_was_pseudoramosa_CERC_1999, [41] 42 Botryosphaeria_ramosa_was_pseudoramosa_CERC_2001, [42] 43 Botryosphaeria_scharifii_CBS_124703, [43] 44 Cophinforma_eucalypti_CBS_134651; TREE 'Fig. S1C (bootstrap support values overlayed). First of 35 equally most parsimonious trees of the Botryosphaeria tub2 alignment.' = (((1:0.0,2:0.0,3:0.0):7,((43:3,(40:0.0,41:0.0,42:0.0):1):2,(((16:0.0,17:0.0,18:0.0,19:0.0,20:0.0,15:0.0):2,11:0.0,7:0.0,8:0.0,12:0.0,14:0.0,9:0.0,10:0.0,(23:0.0,24:0.0):1,(21:1,22:0.0,36:0.0):1,38:0.0,39:0.0,37:0.0,25:0.0,(28:0.0,29:0.0,30:0.0,31:0.0,32:0.0,27:0.0,33:0.0,34:0.0,35:0.0):1,13:0.0,26:0.0):1,(4:0.0,5:0.0,6:0.0):4):4):2):13,44:8):0.0; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 387; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 387; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 387; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1606824008880; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1262044425971547113; tell It; setDefaultOrder 0 1 2 26 27 28 14 15 18 19 13 16 37 17 12 7 8 9 10 11 22 23 20 21 31 38 39 32 33 34 35 36 40 41 42 29 30 24 25 4 5 6 3 43; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 89433540521207705; mqVersion 361; checksumv 0 3 1756130480 null getNumChars 387 numChars 387 getNumTaxa 44 numTaxa 44 short true bits 15 states 15 sumSquaresStatesOnly 301623.0 sumSquares 301623.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 259; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1730 1239; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #89433540521207705 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 332; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1471 1167; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;