#NEXUS [written Wed Dec 02 14:04:46 CET 2020 by Mesquite version 3.61 (build 927) at 2017-15-inch-MacBook-Pro.local/192.168.2.86] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=23; TAXLABELS Dothiorella_sarmentorum_CBS_124720 Pseudofusicoccum_adansoniae_CBS_122053 Pseudofusicoccum_adansoniae_CBS_122054 Pseudofusicoccum_adansoniae_CBS_122055 Pseudofusicoccum_adansoniae_CBS_122056 Pseudofusicoccum_ardesiacum_CBS_122062 Pseudofusicoccum_ardesiacum_CBS_122063 Pseudofusicoccum_ardesiacum_CBS_122064 Pseudofusicoccum_kimberleyense_CBS_122058 Pseudofusicoccum_kimberleyense_CBS_122059 Pseudofusicoccum_kimberleyense_CBS_122060 Pseudofusicoccum_kimberleyense_CBS_122061 Pseudofusicoccum_kimberleyense_CPC_29627 Pseudofusicoccum_olivaceum_CBS_124939 Pseudofusicoccum_olivaceum_CBS_124940 Pseudofusicoccum_olivaceum_CPC_34655 Pseudofusicoccum_stromaticum_CBS_117448 Pseudofusicoccum_stromaticum_CBS_117449 Pseudofusicoccum_violaceum_CBS_115453 Pseudofusicoccum_violaceum_CBS_115594 Pseudofusicoccum_violaceum_CBS_124936 Pseudofusicoccum_violaceum_CBS_124937 Pseudofusicoccum_violaceum_CBS_124938 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=427; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Dothiorella_sarmentorum_CBS_124720 TGCTGCTTTCTGGTTTGTTGCCAAAACACGCCCGCTCCCGCGCTCCC-GCTGACGCGAATCGACACAACAGGCAGACCATCTCTGGCGAGCACGGCCTCGACGGCTCCGGCGTG--------------------------------------------------------TACAACGGCACCTCGGACCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTACACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTATGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGTAACAACTG Pseudofusicoccum_adansoniae_CBS_122053 TGCTGCCTTCTGGTTTGTTGCC-AAACACGCCCGCCCCCGCGCTCCTGGCTGACGCGAATCGACACCATAGGCAGACCATTTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTGAGTTTGCGCGCTCCCCGCACTTTGGCGCACCTTGCAATGCTAATGCACAGCAGCTACAACGGCACCTCGGACCTCCAGCTTGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA-ACTCACCCGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCAAACAACAAGTATGTGCCCCGTGCCGTCCTTGTCGACCTGGAGCCCGGCACCATGGACGCTGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGTGCCGGTAACAACTG Pseudofusicoccum_adansoniae_CBS_122054 TGCTGCTTTCTGGTTTGTTGCC-AAACACGCCCGCCCCCGCGCTCCTGGCTGACGCGAATCGACACCATAGGCAGACCATTTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTGAGTTTGCGCGCTCCCCGCACTTTGGCGCACCTTGCAATGCTAATGCACAGCAGCTACAACGGCACCTCGGACCTCCAGCTTGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA-ACTCACCCGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCAAACAACAAGTATGTGCCCCGTGCCGTCCTTGTCGACCTGGAGCCCGGCACCATGGACGCTGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGTGCCGGTAACAACTG Pseudofusicoccum_adansoniae_CBS_122055 TGCTGCTTTCTGGTTTGTTGCC-AAACACGCCCGCCCCCGCGCTCCTGGCTGACGCGAATCGACACCATAGGCAGACCATTTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTGAGTTTGCGCGCTCCCCGCACTTTGGCGCACCTTGCAATGCTAATGCACAGCAGCTACAACGGCACCTCGGACCTCCAGCTTGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA-ACTCACCCGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCAAACAACAAGTATGTGCCCCGTGCCGTCCTTGTCGACCTGGAGCCCGGCACCATGGACGCTGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGTGCCGGTAACAACTG Pseudofusicoccum_adansoniae_CBS_122056 TGCTGCTTTCTGGTTTGTTGCC-AAACACGCCCGCCCCCGCGCTCCTGGCTGACGCGAATCGACACCATAGGCAGACCATTTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTGAGTTTGCGCGCTCCCCGCACTTTGGCGCACCTTGCAATGCTAATGCACAGCAGCTACAACGGCACCTCGGACCTCCAGCTTGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA-ACTCACCCGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCAAACAACAAGTATGTGCCCCGTGCCGTCCTTGTCGACCTGGAGCCCGGCACCATGGACGCTGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGTGCCGGTAACAACTG Pseudofusicoccum_ardesiacum_CBS_122062 TGCTGCTTTCTGGTTTGTTGCC-AAACACGCCCGCCCCCGCGCTCCTGGCTGACGCGAATCGACACCACAGGCAGACCATCTCTGGCGAGCATGGCCTGGATGGCTCCGGCGTGTGAGTTTGCGCGCTCCCCGCACTATAGCGCACCTTGCAATGCTAATGCACAGCAGTTACAACGGCACCTCGGACCTCCAGCTTGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA-ACTCACCCGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCAAACAACAAGTATGTGCCCCGTGCCGTCCTTGTCGACCTGGAGCCCGGCACCATGGACGCTGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGTGCCGGTAACAACTG Pseudofusicoccum_ardesiacum_CBS_122063 TGCTGCTTTCTGGTTTGTTGCC-AAACACGCCCGCCCCCGCGCTCCTGGCTGACGCGAATCGACACCACAGGCAGACCATCTCTGGCGAGCATGGCCTGGATGGCTCCGGCGTGTGAGTTTGCGCGCTCCCCGCACTATAGCGCACCTTGCAATGCTAATGCACAGCAGTTACAACGGCACCTCGGACCTCCAGCTTGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA-ACTCACCCGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCAAACAACAAGTATGTGCCCCGTGCCGTCCTTGTCGACCTGGAGCCCGGCACCATGGACGCTGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGTGCCGGTAACAACTG Pseudofusicoccum_ardesiacum_CBS_122064 TGCTGCTTTCTGGTTTGTTGCC-AAACACGCCCGCCCCCGCGCTCCTGGCTGACGCGAATCGACACCACAGGCAGACCATCTCTGGCGAGCATGGCCTGGATGGCTCCGGCGTGTGAGTTTGCGCGCTCCCCGCACTATAGCGCACCTTGCAATGCTAATGCACAGCAGTTACAACGGCACCTCGGACCTCCAGCTTGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA-ACTCACCCGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCAAACAACAAGTATGTGCCCCGTGCCGTCCTTGTCGACCTGGAGCCCGGCACCATGGACGCTGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGTGCCGGTAACAACTG Pseudofusicoccum_kimberleyense_CBS_122058 TGCTGCTTTCTGGTTTGTTGCC-AAACACGCCCGCCCCCGCGCTCCTGGCTGACGCGAATCGACACCACAGGCAGACCATCTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTGAGTTTGCGCGTTTCCCGCACTATGGCGCACCTTGCAATGCTAATGCACAGCAGCTACAACGGCACCTCGGACCTCCAGCTTGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA-ACTCACCCGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCAAACAACAAGTATGTGCCCCGTGCCGTCCTTGTCGACCTGGAGCCCGGTACCATGGACGCTGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGTGCCGGTAACAACTG Pseudofusicoccum_kimberleyense_CBS_122059 TGCTGCTTTCTGGTTTGTTGCC-AAACACGCCCGCCCCCGCGCTCCTGGCTGACGCGAATCGACACCACAGGCAGACCATCTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTGAGTTTGCGCGTTTCCCGCACTATGGCGCACCTTGCAATGCTAATGCACAGCAGCTACAACGGCACCTCGGACCTCCAGCTTGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA-ACTCACCCGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCAAACAACAAGTATGTGCCCCGTGCCGTCCTTGTCGACCTGGAGCCCGGTACCATGGACGCTGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGTGCCGGTAACAACTG Pseudofusicoccum_kimberleyense_CBS_122060 TGCTGCTTTCTGGTTTGTTGCC-AAACACGCCCGCCCCCGCGCTCCTGGCTGACGCGAATCGACACCACAGGCAGACCATCTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTGAGTTTGCGCGTTTCCCGCACTATGGCGCACCTTGCAATGCTAATGCACAGCAGCTACAACGGCACCTCGGACCTCCAGCTTGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA-ACTCACCCGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCAAACAACAAGTATGTGCCCCGTGCCGTCCTTGTCGACCTGGAGCCCGGTACCATGGACGCTGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGTGCCGGCAACAACTG Pseudofusicoccum_kimberleyense_CBS_122061 TGCTGCTTTCTGGTTTGTTGCC-AAACACGCCCGCCCCCGCGCTCCTGGCTGACGCGAATCGACACCACAGGCAGACCATCTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTGAGTTTGCGCGTTTCCCGCACTATGGCGCACCTTGCAATGCTAATGCACAGCAGCTACAACGGCACCTCGGACCTCCAGCTTGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA-ACTCACCCGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCAAACAACAAGTATGTGCCCCGTGCCGTCCTTGTCGACCTGGAGCCCGGTACCATGGACGCTGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGTGCCGGCAACAACTG Pseudofusicoccum_kimberleyense_CPC_29627 TGCTGCCTTCTGGTTTGTTGCC-AAACACGCCCGCCCCCGCGCTCCTGGCTGACGCGAATCGACACCACAGGCAGACCATCTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTGAGTTTGCGCGCTCCCCGCACTATGGCGCACCTTGCAATGCTAATGCACAGCAGCTACAACGGCACCTCGGACCTCCAGCTTGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA-ACTCACCCGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCAAACAACAAGTATGTGCCCCGTGCCGTCCTTGTCGACCTGGAGCCCGGTACCATGGACGCTGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGTGCCGGTAACAACTG Pseudofusicoccum_olivaceum_CBS_124939 TGCTGCTTTCTGGTTTGTTGCC-AAACACGCCCGCCCCCGCGCTCCTGGCTGACGCGAATCGACACCACAGGCAGACCATCTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTGAGTTTGCGCGCTCCCCGCACTTTGGCGCATCTTGCAATGCTAATGCATAGCAGCTACAACGGCACCTCGGACCTCCAGCTTGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA-ACTCACCCGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCAAACAACAAGTATGTGCCCCGTGCCGTCCTTGTCGACCTGGAGCCCGGCACCATGGACGCTGTCCGCGCCGGTCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGTGCCGGTAACAACTG Pseudofusicoccum_olivaceum_CBS_124940 TGCTGCTTTCTGGTTTGTTGCC-AAACACGCCCGCCCCCGCGCTCCTGGCTGACGCGAATCGACACCACAGGCAGACCATCTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTGAGTTTGCGCGCTCCCCGCACTTTGGCGCATCTTGCAATGCTAATGCACAGCAGCTACAACGGCACCTCGGACCTCCAGCTTGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA-ACTCACCCGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCAAACAACAAGTATGTGCCCCGTGCCGTCCTTGTCGACCTGGAGCCCGGCACCATGGACGCTGTCCGCGCCGGTCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGTGCCGGTAACAACTG Pseudofusicoccum_olivaceum_CPC_34655 TGCTGCTTTCTGGTTTGTTGCC-AAACACGCCCGCCCCCGCGCTCCTGGCTGACGCGAATCGACACCACAGGCAGACCATCTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTGAGTTTGCGCGCTTCCCGCACTTTGGCGCATCTTGCAATGCTAATGCACAGCAGCTACAACGGCACTTCGGACCTCCAGCTTGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA-ACTCACCCGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCAAACAACAAGTATGTGCCCCGTGCCGTCCTTGTCGACCTGGAGCCCGGCACCATGGACGCTGTCCGCGCCGGTCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGTGCCGGTAACAACTG Pseudofusicoccum_stromaticum_CBS_117448 TGCTGCTTTCTGGTTTGTTGCC-AAACACGCCCGCCCCCGCGCTCCTGGCTGACGCGAATCGACACCACAGGCAGACCATCTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTGAGTTTGCGCGCTCCCCGCACTTTGGCGCATCTTGCAATGCTAATACACAGCAGCTACAACGGCACCTCGGACCTCCAGCTTGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA-ACTCACCCGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCAAACAACAAGTATGTGCCCCGTGCCGTCCTTGTCGACCTGGAGCCCGGCACCATGGACGCTGTCCGCGCCGGTCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGTGCCGGTAACAACTG Pseudofusicoccum_stromaticum_CBS_117449 TGCTGCTTTCTGGTTTGTTGCC-AAACACGCCCGCCCCCGCGCTCCTGGCTGACGCGAATCGACACCACAGGCAGACCATCTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTGAGTTTGCGCGCTCCCCGCACTTTGGCGCATCTTGCAATGCTAATACACAGCAGCTACAACGGCACCTCGGACCTCCAGCTTGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA-ACTCACCCGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCAAACAACAAGTATGTGCCCCGTGCCGTCCTTGTCGACCTGGAGCCCGGCACCATGGACGCTGTCCGCGCCGGTCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGTGCCGGTAACAACTG Pseudofusicoccum_violaceum_CBS_115453 TGCTGCTTTCTGGTTTGTTGCC-AAACACGCCCGCCCCCGCGCTCCTGGCTGACGCGAATCGACACCACAGGCAGACCATCTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTGAGTTTGCGCGCTCCCCGCACTATGGCGCACCTTGCAATGCTAATGCACAGCAGCTACAACGGCACCTCGGACCTCCAGCTTGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA-ACTCACCCGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCAAACAACAAGTATGTGCCCCGTGCCGTCCTTGTCGACCTGGAGCCCGGTACCATGGACGCTGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGTGCCGGTAACAACTG Pseudofusicoccum_violaceum_CBS_115594 TGCTGCCTTCTGGTTTGTTGCC-AAACACGCCCGCCCCCGCGCTCCTGGCTGACGCGAATCGACACCACAGGCAGACCATCTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTGAGTTTGCGCGCTCCCCGCACTATGGCGCACCTTGCAATGCTAATGCACAGCAGCTACAACGGCACCTCGGACCTCCAGCTTGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA-ACTCACCCGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCAAACAACAAGTATGTGCCCCGTGCCGTCCTTGTCGACCTGGAGCCCGGTACCATGGACGCTGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGTGCCGGTAACAACTG Pseudofusicoccum_violaceum_CBS_124936 TGCTGCTTTCTGGTTTGTTGCC-AAACACGCCCGCCCCCGCGCTCCTGGCTGACGCGAATCGACACCACAGGCAGACCATCTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTGAGTTTGCGCGCTCCCCGCACTATGGCGCACCTTGCAATGCTAATGCACAGCAGCTACAACGGCACCTCGGACCTCCAGCTTGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA-ACTCACCCGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCAAACAACAAGTATGTGCCCCGTGCCGTCCTTGTCGACCTGGAGCCCGGTACCATGGACGCTGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGTGCCGGTAACAACTG Pseudofusicoccum_violaceum_CBS_124937 TGCTGCCTTCTGGTTTGTTGCC-AAACACGCCCGCCCCCGCGCTCCTGGCTGACGCGAATCGACACCACAGGCAGACCATCTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTGAGTTTGCGCGCTCCCCGCACTATGGCGCACCTTGCAATGCTAATGCACAGCAGCTACAACGGCACCTCGGACCTCCAGCTTGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA-ACTCACCCGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCAAACAACAAGTATGTGCCCCGTGCCGTCCTTGTCGACCTGGAGCCCGGTACCATGGACGCTGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGTGCCGGTAACAACTG Pseudofusicoccum_violaceum_CBS_124938 TGCTGCTTTCTGGTTTGTTGCC-AAACACGCCCGCCCCCGCGCTCCTGGCTGACGCGAATCGACACCACAGGCAGACCATCTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTGAGTTTGCGCGCTCCCCGCACTATGGCGCACCTTGCAATGCTAATGCACAGCAGCTACAACGGCACCTCGGACCTCCAGCTTGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA-ACTCACCCGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCAAACAACAAGTATGTGCCCCGTGCCGTCCTTGTCGACCTGGAGCCCGGTACCATGGACGCTGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGTGCCGGTAACAACTG ; END; BEGIN mrbayes; outgroup Dothiorella_sarmentorum_CBS_124720; charset locus1 = 1 -427; partition AllLoci = 1 : locus1; log start filename = PseudofusicoccumTUBMB.log; END; BEGIN mrbayes; set partition = AllLoci; prset applyto = ( 1 ) statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); Lset applyto = ( 1 ) nst = 6 rates = propinv; unlink shape = ( all ) pinvar = ( all ) statefreq = ( all ) revmat = ( all ); mcmcp ngen = 1000000000 nchains = 4 printfreq = 10 temp = 0.2 samplefreq = 10 savebrlens = yes stoprule = yes stopval = 0.01 Relburnin = yes BurninFrac = 0.25 filename = PseudofusicoccumTUBMB; mcmc; sump; sumt; END; BEGIN TREES; Title 'Trees from "S9C_PseudofusicoccumTUBMB.nexus"'; ID 01761ded07ce73; LINK Taxa = Taxa; TRANSLATE [0] 1 Dothiorella_sarmentorum_CBS_124720, [1] 2 Pseudofusicoccum_adansoniae_CBS_122053, [2] 3 Pseudofusicoccum_adansoniae_CBS_122054, [3] 4 Pseudofusicoccum_adansoniae_CBS_122055, [4] 5 Pseudofusicoccum_adansoniae_CBS_122056, [5] 6 Pseudofusicoccum_ardesiacum_CBS_122062, [6] 7 Pseudofusicoccum_ardesiacum_CBS_122063, [7] 8 Pseudofusicoccum_ardesiacum_CBS_122064, [8] 9 Pseudofusicoccum_kimberleyense_CBS_122058, [9] 10 Pseudofusicoccum_kimberleyense_CBS_122059, [10] 11 Pseudofusicoccum_kimberleyense_CBS_122060, [11] 12 Pseudofusicoccum_kimberleyense_CBS_122061, [12] 13 Pseudofusicoccum_kimberleyense_CPC_29627, [13] 14 Pseudofusicoccum_olivaceum_CBS_124939, [14] 15 Pseudofusicoccum_olivaceum_CBS_124940, [15] 16 Pseudofusicoccum_olivaceum_CPC_34655, [16] 17 Pseudofusicoccum_stromaticum_CBS_117448, [17] 18 Pseudofusicoccum_stromaticum_CBS_117449, [18] 19 Pseudofusicoccum_violaceum_CBS_115453, [19] 20 Pseudofusicoccum_violaceum_CBS_115594, [20] 21 Pseudofusicoccum_violaceum_CBS_124936, [21] 22 Pseudofusicoccum_violaceum_CBS_124937, [22] 23 Pseudofusicoccum_violaceum_CBS_124938; TREE Fig._S9C._Bayesian_phylogeny_of_the_Pseudofusicoccum_tub2_alignment. = (1:0.02132844,(((17:0.0008397531,18:0.0008994354):0.001833608,16:0.002828513,14:0.001675725,15:0.0007383353):0.002877286,(2:0.001761298,3:0.0007098311,4:0.0007071413,5:0.0006584447):0.002932834):0.001854899,((6:0.0008281001,7:0.0007902838,8:0.0007252898):0.005298652,(19:0.0007432559,(20:0.0007852081,22:0.0008408458,13:0.0007527175):0.00179033,21:0.0007907677,23:0.0008192906,(9:0.0007741426,10:0.0008102035,(11:0.0008463788,12:0.0007846004):0.001976393):0.003119696):0.001837398):0.001858685); END; BEGIN TREES; Title 'Trees from "S9C_PseudofusicoccumTUBMB.nexus"'; ID 01761ded07d174; LINK Taxa = Taxa; TRANSLATE [0] 1 Dothiorella_sarmentorum_CBS_124720, [1] 2 Pseudofusicoccum_adansoniae_CBS_122053, [2] 3 Pseudofusicoccum_adansoniae_CBS_122054, [3] 4 Pseudofusicoccum_adansoniae_CBS_122055, [4] 5 Pseudofusicoccum_adansoniae_CBS_122056, [5] 6 Pseudofusicoccum_ardesiacum_CBS_122062, [6] 7 Pseudofusicoccum_ardesiacum_CBS_122063, [7] 8 Pseudofusicoccum_ardesiacum_CBS_122064, [8] 9 Pseudofusicoccum_kimberleyense_CBS_122058, [9] 10 Pseudofusicoccum_kimberleyense_CBS_122059, [10] 11 Pseudofusicoccum_kimberleyense_CBS_122060, [11] 12 Pseudofusicoccum_kimberleyense_CBS_122061, [12] 13 Pseudofusicoccum_kimberleyense_CPC_29627, [13] 14 Pseudofusicoccum_olivaceum_CBS_124939, [14] 15 Pseudofusicoccum_olivaceum_CBS_124940, [15] 16 Pseudofusicoccum_olivaceum_CPC_34655, [16] 17 Pseudofusicoccum_stromaticum_CBS_117448, [17] 18 Pseudofusicoccum_stromaticum_CBS_117449, [18] 19 Pseudofusicoccum_violaceum_CBS_115453, [19] 20 Pseudofusicoccum_violaceum_CBS_115594, [20] 21 Pseudofusicoccum_violaceum_CBS_124936, [21] 22 Pseudofusicoccum_violaceum_CBS_124937, [22] 23 Pseudofusicoccum_violaceum_CBS_124938; TREE 'Fig. S9B (bootstrap support values overlayed). First of five equally most parsimonious trees of the Pseudofusicoccum tef1 alignment.' = ((((17:0.0,18:0.0):1,16:2,14:1,15:0.0):2,((2:1,3:0.0,4:0.0,5:0.0):2,((6:0.0,7:0.0,8:0.0):4,(19:0.0,(20:0.0,22:0.0,13:0.0):1,21:0.0,23:0.0,(9:0.0,10:0.0,(11:0.0,12:0.0):1):2):1):1):0.0):13,1:62):0.0; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 427; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 427; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 427; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1606914286360; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5412823601547947372; tell It; setDefaultOrder 22 5 6 7 8 9 10 11 18 19 20 21 17 3 4 2 0 1 12 13 14 15 16; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8547185799558080851; mqVersion 361; checksumv 0 3 1833283795 null getNumChars 427 numChars 427 getNumTaxa 23 numTaxa 23 short true bits 15 states 15 sumSquaresStatesOnly 183480.0 sumSquares 183480.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 259; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1611 1111; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8547185799558080851 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 617; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1352 1039; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;