#NEXUS [written Wed Dec 02 14:17:46 CET 2020 by Mesquite version 3.61 (build 927) at 2017-15-inch-MacBook-Pro.local/192.168.2.86] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=32; TAXLABELS Aplosporella_hesperidica_CBS_732.79 Saccharata_acaciae_CBS_143167 Saccharata_acaciae_CPC_32607 Saccharata_banksiae_CBS_142137 Saccharata_capensis_CBS_122693 Saccharata_daviesiae_CBS_142120 Saccharata_grevilleae_CBS_145998 Saccharata_grevilleae_CPC_29228 Saccharata_hakeae_CBS_142167 Saccharata_hakeae_CBS_142168 Saccharata_hakeicola_CBS_142124 Saccharata_hakeicola_CBS_142172 Saccharata_hakeigena_CBS_143405 Saccharata_hakeiphila_CBS_142169 Saccharata_hawaiiensis_CBS_111787 Saccharata_hawaiiensis_CBS_114570 Saccharata_hawaiiensis_was_protearum_CBS_114569 Saccharata_intermedia_CBS_125546 Saccharata_kirstenboschensis_CBS_123537 Saccharata_lambertiae_CBS_142123 Saccharata_leucospermi_CBS_122694 Saccharata_petrophiles_CBS_142171 Saccharata_petrophilicola_CPC_29230 Saccharata_petrophilicola_CPC_29264 Saccharata_proteae_CBS_115206 Saccharata_proteae_CBS_115384 Saccharata_proteae_CBS_115490 Saccharata_proteae_CBS_115498 Saccharata_proteae_CBS_116174 Saccharata_proteae_CBS_119218 Saccharata_proteae_CBS_121406 Saccharata_proteae_CBS_121410 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=627; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Aplosporella_hesperidica_CBS_732.79 TTGACCCTGCAGTCACCCCTAATGCCACCAAGATTTTTATCAACGGTGTCTGGGTTGGTGTGCACCGCGACCCGACGCAACTCGTGTCGGTCGTTCGCAGCCTGCGCAGAGACGGCACCCTATCCGCAGAAATGAGTTTGATCCGAGATGTCCGTGACCGTGAATTCAAGATCTTCACGGATGCTGGGCGTGTGCAAAGGCCGTTGTTCATTGTTGACGACGACCCGAAGAGTCCTAACAAGGGCAACCTGACTCTGAGCAGGGAGCACGTTCAAAAACTCGTCGATGACAGGGACATTGATATTTCTGGTATGGACGATGAAGAACGCGAGAATGCAAGGTTTGGCTGGAACGGACTGCTGCGTTCTGGCGTGGTCGAATACATGGATGCCGAAGAGGAAGAAACGGCCATGATTGTCATGACACCAGAGGATTTGGAGGAGCACCACCGAATCCGGACC------GGACAGCCCAAGGAAGAGGAAGATGACGA---------------------------------------------------------------------GGACAGAGATCCCCACAAGCGTGTCAAGCCTGAGCCGAGCAAGTCGATCAAGACCTACACGC Saccharata_acaciae_CBS_143167 ACGACCCGGTGCGGTACCCGCATGCCACGAAGATTTTCATCAACGGGGTGTGGGTTGGTGTACATCATGATCCGACTCAATTGGTTCAGGTTGTGCGAAGCCTCCGCAGAGACGGCACCCTCACACCTGAACTCAGTCTGGTCCGTGACGTTCGTGATAGGGAGTTCAAGATCTTCACCGATGCAGGTCGAGTCCAGCGACCCTTGTTCGTTGTCGAAGACAATCCAAACAGCCCGAACAAGGGCAACCTGGTCTTCAGCGGTGAACACATCAAGAAGTTGAAGAACGACGCAAAAACGGATACATCTGGAATGGACGAGGAAGACCGAGAGAGTGCGATTTGGGGTTGGAATGGCTTGCTGCGAGAGGGTGTTGTTGAATATCTTGACGCAGAAGAAGAGGAGACCGCCATGATAGTCATGACGCCGGATGATCTTGAGGATCACCACCGAGCCATGACTACGGGAATAATAGATGAGGATGAGATAAAGTCAGATGATGATG---------------------------AAGAGACGAAAGAGAAGAAGATGGCCAGAAAGGCGACCCAGGACCCTCACAAGCGCGTCAAGCAGAAGCCGAACCCCTTGATCAAGTCCTTCACCC Saccharata_acaciae_CPC_32607 ACGACCCGGTGCGGTACCCGCATGCCACGAAGATTTTCATCAACGGAGTTTGGGTTGGTGTACATCATGATCCGACTCAATTGGTTCAGGTTGTGCGAAGCCTCCGCAGAGACGGCACCCTCACACCTGAACTCAGTCTGGTCCGTGACGTTCGTGATAGGGAGTTCAAGATCTTCACCGATGCAGGTCGAGTCCAGCGACCCTTGTTCGTTGTCGAAGACAATCCAAACAGCCCGAACAAGGGCAACCTGGTCTTCAGCGGGGAACACATCAAGAAGTTGAAGAACGACGCAAAAACGGATACATCTGGAATGGACGAGGAAGACCGAGAGAGTGCGATTTGGGGTTGGAATGGCTTGCTGCGAGAGGGTGTCGTTGAATATCTTGACGCAGAAGAAGAGGAGACCGCCATGATAGTCATGACGCCGGATGATCTTGAGGATCACCACCGAGCAATGACTACGGGAAT?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Saccharata_banksiae_CBS_142137 ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TCAAGATCTTCACCGATGCAGGCCGCGTCCAGCGTCCCTTGTTTGTTATTGATGACAATCCTAACAGCCCGAACAAGGGAAACCTTGTCTTTAACGGGGAACACATTGAGAAACTGGAAAAAGACAGGAATATCGATACCTCCGGTATGGATGAGGAAGACCGTGACAAGACGATCTACGGCTGGAATGGCTTGCTGTCAGACGGTGTCGTTGAGTACCTTGACGCCGAAGAGGAAGAAACAGCTATGATTGTCATGACGCCGGATGACCTGGAGGATCATCACCGTGCCGCTACTTCGACTGAACCGGAAGAGGATGAGGACGAGTACGATGACGTTGCTGATTTGGGAGCTATGGACGGCGAAGACGGCGAGAGGAAGAAATCGAAGGGACCAAAGATAGACAAGGATCCTCATAGGCGTGTGAAGCAAAAGCCGAACCCCTTGATCAAGTCCTACACGC Saccharata_capensis_CBS_122693 ACGATCCGGTGCGGTACCCGCATGCCACGAAGATTTTCATCAACGGAGTCTGGGTTGGTGTACATCACGATCCTACTCAGCTAGTCCAGGTTGTCCGAAGCCTCCGTAGAGATGGCACGCTCACGCCCGAGCTCAGTCTGGTTCGTGATGTTCGTGATAGAGAATTCAAGATCTTCACCGATGCGGGTCGCGTCCAGCGTCCCTTGTTCGTCATTGATGACAACCCCAACAGCCCGAACAAGGGAAACCTCGTCTTCAACGTGGATCACATCGAGAAATTGGAGAAAGACAAGAGTATCGATACCGCTGGTATGGATGAGGAAGATCGTGACAAGACACTCTACGGCTGGAATGGCCTGCTCTCAGACGGTGTCGTTGAGTACCTTGACGCAGAAGAGGAAGAAACAGCCATGATTGTCATGACCCCGGACGACCTGGAGGATCACCATCGTGCCAGTACTCTGACTGAACCGGAAGAGGACGAGGACGAATACGATGACGGTGTTGACATTGGAGCTATGGATGACGAAGAGGGCGAGAGGAAGAAATCGAAAGGACCAAGGATAGACAAGGACCCTCACAGGCGTGTGAAGCAGAAGCCGAACCCCCTCATCAAGTCCTACACGC Saccharata_daviesiae_CBS_142120 ATGATCCCGTGCGATACCCGCATGCCACGAAGATTTTCATCAACGGAGTCTGGGTCGGTGTACATCACGATCCTACTCAACTTGTCCAGGTCGTCAGAAGTCTCCGTAGGGATGGCACACTCACCCCCGAGCTCAGTCTGGTCCGTGATGTCCGTGATAGGGAATTCAAGATTTTCACCGATGCAGGCCGCGTCCAGCGTCCCCTGTTCGTTATTGATGACAATCCCAACAGCCCGAACAAGGGAAACCTTGTCTTCAACGGGGAACACATTGAGAAACTGGAACGAGACAGGAATATCGATACCTCCGGTATGGATGAGGAAGATCGTGACAAGACAATCTACGGCTGGAACGGCTTGCTGTCAGACGGTGTGGTTGAGTACCTTGACGCAGAAGAGGAAGAGACAGCCATGATCGTCATGACGCCGGATGACCTGGAGGATCATCACCGCGCCGCTACTTCAACTGAACCGGAAGAAGAAGAAGACGAGTACGATGACATGGCTGATTTGGGAGCTATGGACGGCGAAGATGGCGAGAGGAAGAAGCCAAAGGGACCGAAGATAGACAAGGACCCTCATAGGCGTGTGAAGCAAAAGCCGAACCCCTTGATCAAGTCGTACACGC Saccharata_grevilleae_CBS_145998 ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GGGAACACATCGAGAAACTGGAAAAAGACAGGAATGTCGATACCTCCGGTATGGATGAGGAAGATCGTGACAAGACAATCTACGGCTGGAACGGCTTGCTGGCAGACGGTGTTGTCGAGTACCTTGATGCAGAAGAGGAAGAAACAGCCATGATTGTCATGACGCCGGATGACCTGGAGGATCATCACCGTGCCGCTACTTCGACTGAACCGGAAGAGGATGAGGACGACTATGATGACGTTGCTGACCTGGGAGCTATGGACGGCGAAGATGGCGAGAGGAAGAAATCAAAGGGACCAAAGATAGACAAGGATCCTCATAGGCGTGTGAAGCAAAAGCCGAACCCCTTGATCAAGTCCTATACGC Saccharata_grevilleae_CPC_29228 ATGATCCGGTGCGATACCCGCATGCCACGAAGATTTTCATCAACGGAGTCTGGGTTGGCGTACATCACGATCCTACTCAGCTGGTCCAGGTTGTCAGAAGCCTCCGTAGAGATGGCACGCTCACGCCCGAGCTCAGTCTGGTCCGTGATGTCCGTGATAGGGAGTTCAAGATCTTCACCGATGCAGGCCGCGTCCAGCGTCCCTTGTTCGTTATTGATGACAACCCCAACAGCCCGAACAAGGGAAACCTTGTCTTCAACGGGGAACACATCGAGAAACTGGAAAAAGACAGGAATGTCGATACCTCCGGTATGGATGAGGAAGATCGTGACAAGACAATCTACGGCTGGAACGGCTTGCTGGCAGACGGTGTTGTCGAGTACCTTGATGCAGAAGAGGAAGAAACAGCCATGATTGTC???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Saccharata_hakeae_CBS_142167 ACGACCCGGTGCGATACCCGCATGCCACGAAGATTTTCATCAACGGAGTGTGGGTTGGTGTACATCATGATCCGACTCAATTGGTTCAGGTTGTGCGAAGCCTCCGCAGAGACGGCACGCTCACACCTGAACTCAGTCTGGTCCGTGATGTTCGTGATAGGGAGTTCAAGATCTTCACCGATGCAGGTCGAGTCCAGCGACCCTTGTTCGTTGTCGAAGACAATCCAAACAGCCCGAACAAGGGCAACCTGGTCTTCAGCGGGGAACACATCAAGAAGTTGAAGAACGACGCAAAAACGGATACATCTGGAATGGACGAGGAAGACCGAGAAAGTGCGATTTGGGGTTGGAATGGCTTGCTGCGCGAGGGTGTCGTTGAATATCTTGACGCAGAAGAAGAGGAGACTGCCATGATAGTCATGACCCCGGATGATCTTGAGGATCACCATCGAGCCATGACTACGGGAATAATAGATGAGGACGAGATCAAATCAGATGATGATG---------------------------AAGAGACAAGAGAGAAGAAGATGGCCAGAAAGGCGGCCCATGACCCTCACAAGCGCGTCAAGCAGAAGCCGAACCCCTTGATCAAGTCCTTCACCC Saccharata_hakeae_CBS_142168 ACGACCCGGTGCGATACCCGCATGCCACGAAGATTTTCATCAACGGAGTGTGGGTTGGTGTACATCATGATCCGACTCAATTGGTTCAGGTTGTGCGAAGCCTCCGCAGAGACGGCACGCTCACACCTGAACTCAGTCTGGTCCGTGATGTTCGTGATAGGGAGTTCAAGATCTTCACCGATGCAGGTCGAGTCCAGCGACCCTTGTTCGTTGTCGAAGACAATCCAAACAGCCCGAACAAGGGCAACCTGGTCTTCAGCGGGGAACACATCAAGAAGTTGAAGAACGACGCAAAAACGGATACATCTGGAATGGACGAGGAAGACCGAGAAAGTGCGATTTGGGGTTGGAATGGCTTGCTGCGCGAGGGTGTCGTTGAATATCTTGACGCAGAAGAAGAGGAGACTGCCATGATAGTCATGACCCCGGATGATCTTGAGGATCACCATCGAGCCATGACTACGGGAATAATAGATGAGGACGAGATCAAATCAGATGATGATG---------------------------AAGAGACAAGAGAGAAGAAGATGGCCAGAAAGGCGGCCCAGGACCCTCACAAGCGCGTCAAGCAGAAGCCGAACCCCTTGATCAAGTCCTTCACCC Saccharata_hakeicola_CBS_142124 ATGATCCGGTACGATACCCGCATGCTACGAAGATTTTCATCAACGGAGTGTGGGTTGGCGTACACCACGATCCTACCCAGCTAGTTCAGGTCGTCCGAAGCCTCCGTAGAGACGGCACGCTCACACCCGAGCTCAGTCTAGTCCGTGATGTTCGAGACAGGGAGTTCAAGATCTTTACCGATGCAGGCCGAGTCCAGCGTCCCTTGTTCGTTATTGATGACAACCCGAACAGCCCGAACAAGGGAAACCTGGTCTTCAACGGGGACCACATCGAGAAGTTGGAAGGGGACAGGAATATCGATACCTCCGGTATGGACGAGGAAGATCGTGACTCGAAGATCTATGGCTGGAATGGCTTGCTCTCAGACGGTGTCGTTGAGTACCTTGACGCAGAAGAAGAAGAAACAGCCATGATTGTCATGACGCCGGATGACCTCGAGGACCATCACCGTGCTGCCACTTCGACGGAACAGGAAGAAGACGAGGACGAATACGACGAAGGGGCTGAGTTCGGAGCCATGGATGGCGAAGATGGCGAGAGGAAGAA---GAAGGGACCTAGGATAGACAAGGATCCCCACAGGCGTGTGAAGCAAAAGCCGAACCCCCTGATCAAGTCCTACACGC Saccharata_hakeicola_CBS_142172 ATGATCCGGTACGATACCCGCATGCTACGAAGATTTTCATCAACGGAGTGTGGGTTGGCGTACACCACGATCCTACCCAGCTAGTTCAGGTCGTCCGAAGCCTCCGTAGAGATGGCACGCTCACACCCGAGCTCAGTCTAGTCCGTGATGTTCGAGACAGGGAGTTCAAGATCTTTACCGATGCAGGCCGAGTCCAGCGTCCCTTGTTCGTTATTGATGACAACCCGAACAGCCCGAACAAGGGAAACCTTGTCTTCAACGGGGACCACATCGAGAAGTTGGAAGGGGACAGGAATATCGATACCTCCGGTATGGACGAGGAAGATCGTGACTCGAAGATCTATGGCTGGAATGGCTTGCTTTCAGACGGTGTCGTTGAGTACCTTGACGCAGAAGAAGAAGAAACAGCCATGATTGTCATGACGCCGGATGACCTCGAGGACCATCACCGTGCTGCCACTTCGACGGAACAGGAAGAAGACGAGGACGAATACGACGAAGGTGCTGAGTT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Saccharata_hakeigena_CBS_143405 ACGACCCGGTGCGATACCCGCATGCTACAAAGATCTTTATCAACGGAGTGTGGGTTGGTGTACACCATGATCCGACTCAATTGGTTCAGGTTGTGCGAAGCCTCCGCAGAGACGGCACGCTCACGCCTGAACTCAGTCTGGTCCGTGACGTTCGTGATAGGGAGTTCAAGATCTTCACCGATGCAGGTCGAGTCCAGCGACCCTTGTTCGTTGTCGAAGACAATCCAAACAGCCCGAACAAGGGCAACCTGGTCTTCAGCGGCGAACACATCAAGAAGTTGAAGAACGACGCAAAGACAGATACATCTGGAATGGACGAGGAAGACCGAGAGAGTGCGATTTGGGGTTGGAATGGCTTGCTGCGAGAGGGTGTCGTTGAGTATCTTGACGCTGAAGAAGAGGAGACTGCCATGATAGTCATGACGCCGGATGATCTTGAGGATCACCACCGAGCCATGACTACGGGAATAATAGACGAGGACGAGATAAAATCAGATGATGATG---------------------------AAGAGACGAAGGAGAAGAAGATGGCCAGAAAGGCGGCCCAGGACCCTCACAAGCGCGTCAAGCAGAAGCCGAACCCATTGATCAAGTCCTTCACTC Saccharata_hakeiphila_CBS_142169 ACGACCCGGTACGATACCCGCATGCCACGAAGATTTTCATCAACGGAGTGTGGGTTGGTGTACATCATGATCCGACTCAATTAGTTCAGGTTGTGCGAAGCCTCCGTAGAGACGGCACGCTCACACCTGAACTCAGTCTGGTCCGTGACGTTCGTGATAGGGAGTTCAAGATCTTCACCGATGCAGGTCGAGTCCAGCGACCCTTGTTTGTTGTCGAAGACAATCCAAACAGCCCGAACAAGGGCAACCTGGTCTTCAGCGGGGAACACATCAAGAAGTTGAAGAACGACGCAAAAACGGATACATCTGGAATGGACGAGGAAGACCGAGAGAGTGCGATTTGGGGTTGGAATGGCTTGCTGCGCGAGGGTGTCGTTGAATATCTTGACGCAGAAGAAGAGGAGACCGCCATGATAGTCATGACGCCGGATGATCTTGAGGATCACCACCGAGCCATGACTACGGGAATAATAGATGAGGATGAGATAAAGTCTGATGATGATG---------------------------AAGAGACGAAAGAGAAGAAGATGGCCAGAAAGGCGGCCCAGGACCCTCACAAGCGCGTCAAGCAGAAGCCGAACCCCTTGATCAAGTCCTTCACCC Saccharata_hawaiiensis_CBS_111787 ACGATCCAGTGCGGTACCCGCATGCCACGAAGATTTTCATCAACGGAGTCTGGGTTGGTGTACATCACGATCCTACTCAGCTAGTCCAGGTTGTCCGAAGCCTCCGTAGAGATGGCACGCTCACGCCTGAGCTCAGTCTGGTCCGTGATGTTCGTGATAGAGAATTCAAGATCTTCACCGATGCGGGTCGCGTCCAGCGTCCCTTGTTCGTCATTGATGACAACCCCAACAGCCCGAACAAGGGAAACCTCGTCTTCAACGTGGACCACATCGAGAAATTGGAGAAAGACAAGAGTATCGATACCGCTGGTATGGATGAGGAAGATCGGGACAAAACACTCTACGGCTGGAATGGCCTGCTCTCAGACGGTGTCGTTGAGTACCTTGACGCAGAAGAGGAAGAAACAGCCATGATTGTCATGACCCCGGACGACCTGGAGGATCACCATCGTGCCAGTACTCTGACTGAACCGGAAGAGGACGAGGACGAATACGATGACGGTGTTGACATTGGAGCTATGGATGACGAAGAGGGCGAGAGAAAGAAATCGAAGGGATCAAGAATAGACAAGGACCCTCACAGGCGTGTGAAGCAGAAGCCGAATCCCCTCATCAAGTCCTACACGC Saccharata_hawaiiensis_CBS_114570 ACGATCCAGTGCGGTACCCGCATGCCACGAAGATTTTCATCAACGGAGTCTGGGTTGGTGTACATCACGATCCTACTCAGCTAGTCCAGGTTGTCCGAAGCCTCCGTAGAGATGGCACGCTCACGCCTGAGCTCAGTCTGGTCCGTGATGTTCGTGATAGAGAATTCAAGATCTTCACCGATGCGGGTCGCGTCCAGCGTCCCTTGTTCGTCATTGATGACAACCCCAACAGCCCGAACAAGGGAAACCTCGTCTTCAACGTGGACCACATCGAGAAATTGGAGAAAGACAAGAGTATCGATACCGCTGGTATGGATGAGGAAGATCGGGACAAAACACTCTACGGCTGGAATGGCCTGCTCTCAGACGGTGTCGTTGAGTACCTTGACGCAGAAGAGGAAGAAACAGCCATGATTGTCATGACCCCGGACGACCTGGAGGATCACCATCGTGCCAGTACTCTGACTGAACCGGAAGAGGACGAGGACGAATACGATGACGGTGTTGACATTGGAGCTATGGATGACGAAGAGGGCGAGAGAAAGAAATCGAAGGGATCAAGAATAGACAAGGACCCTCACAGGCGTGTGAAGCAGAAGCCGAATCCCCTCATCAAGTCCTACACGC Saccharata_hawaiiensis_was_protearum_CBS_114569 ACGATCCAGTGCGGTACCCGCATGCCACGAAGATTTTCATCAACGGAGTCTGGGTTGGTGTACATCACGATCCTACTCAGCTAGTCCAGGTTGTCCGAAGCCTCCGTAGAGATGGCACGCTCACGCCTGAGCTCAGTCTGGTCCGTGATGTTCGTGATAGAGAATTCAAGATCTTCACCGATGCGGGTCGCGTCCAGCGTCCCTTGTTCGTCATTGATGACAACCCCAACAGCCCGAACAAGGGAAACCTCGTCTTCAACGTGGACCACATCGAGAAATTGGAGAAAGACAAGAGTATCGATACCGCTGGTATGGATGAGGAAGATCGGGACAAAACACTCTACGGCTGGAATGGCCTGCTCTCAGACGGTGTCGTTGAGTACCTTGACGCAGAAGAGGAAGAAACAGCCATGATTGTCATGACCCCGGACGACCTGGAGGATCACCATCGTGCCAGTACTCTGACTGAACCGGAAGAGGACGAGGACGAATACGATGACGGTGTTGACATTGGAGCTATGGATGATGAAGAGGGCGAGAGAAAGAAATCGAAGGGATCCAGAATAGACAAGGACCCTCACAGGCGTGTGAAGCAGAAGCCGAATCCCCTCATCAAGTCCTACACGC Saccharata_intermedia_CBS_125546 ACGATCCAGTGCGGTACCCGCATGCCACGAAGATTTTCATCAACGGAGTCTGGGTTGGTGTACATCACGATCCTACTCAGCTAGTCCAAGTTGTCCGAAGCCTCCGTAGAGATGGCACGCTCACGCCCGAGCTCAGTCTGGTTCGTGACGTTCGTGATAGAGAATTCAAAATCTTCACGGATGCGGGTCGCGTCCAGCGTCCCTTATTCGTCATTGATGACAACCCCAACAGCCCGAACAAAGGAAACCTCGTCTTCAACGTGGACCACATCGAGAAATTGGAAAAAGACAAGAGCATCGATACCGCTGGTATGGACGAGGAAGATCGTGACAAGACACTCTATGGCTGGAATGGCCTGCTCTCAGACGGTGTCGTTGAGTACCTTGACGCAGAAGAGGAAGAAACAGCCATGATCGTCATGACCCCGGACGACCTGGAGGATCACCATCGTGCCAGTACTCTGACTGAACCAGAAGAGGATGAGGACGAATACGATGACGGTGTTGACATTGGAGCTATGGATGACGAAGAGGGTGAGAGGAAGAAATCGAAGGGACCAAGGATAGACAAGGACCCTCACAGGCGTGTGAAGCAGAAGCCGAACCCTCTCATCAAGTCCTACACGC Saccharata_kirstenboschensis_CBS_123537 ACGATCCGGTGCGATACCCGCATGCCACGAAGATTTTCATCAACGGCGTCTGGGTTGGTGTGCATCACGATCCTACTCAGCTAGTCCAGGTTGTCCGAAGCCTCCGTAGAGATGGCACGCTCACGCCCGAGCTCAGTCTGGTTCGTGATGTTCGTGATAGAGAATTCAAGATCTTCACCGATGCGGGTCGCGTCCAGCGTCCCTTGTTCGTCATTGACGACAACCCCAACAGCCCGAACAAGGGAAACCTCGTCTTCAACGTGGATCACATCGAGAAATTGGAGAAAGACAAGAGTATCGATACCGCTGGTATGGATGAGGAAGATCGTGACAAGACACTCTACGGCTGGAATGGCCTGCTCTCAGACGGTGTCGTTGAGTACCTTGACGCGGAAGAGGAAGAAACAGCCATGATTGTCATGACCCCGGACGACCTGGAGGATCACCATCGTGCCAGTACTCTGACTGAACCGGAAGAGGACGAAGACGAATACGATGACGGTGTCGACATT---GCTATGGATGACGAAGAGGGCGAGAGGAAGAAATCGAAAGGACCAAGGATAGACAAGGATCCTCACAGGCGTGTGAAGCAGAAGCCTAACCCCCTCATCAAGTCCTACACGC Saccharata_lambertiae_CBS_142123 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GAAACTGGAAAAAGACAGGAATATTGATACCTCCGGTATGGATGAGGAAGATCGTGACAAGACAATCTACGGCTGGAATGGCTTGCTGGCAGACGGGGTCGTCGAGTACCTTGATGCAGAAGAGGAAGAAACAGCCATGATTGTCATGACGCCGGATGACCTGGAGGATCATCACCGTGCCGCTACTTCGACTGAACCGGAAGAGGATGAGGACGACTACGATGACGTTGCTGATCTGGGAGCTATGGACGGCGAAGATGGCGAGAGGAAGAAATCAAAAGGACCAAAGATAGACAAGGATCCTCATAGGCGTGTGAAGCAAAAGCCGAACCCCTTGATCAAGTCCTATACGC Saccharata_leucospermi_CBS_122694 ACGATCCAGTGCGGTACCCGCATGCCACGAAGATTTTCATCAACGGAGTCTGGGTTGGTGTACATCACGATCCTACTCAGCTAGTCCAAGTTGTCCGAAGCCTCCGTAGAGATGGCACGCTCACGCCCGAGCTCAGTCTGGTTCGTGACGTTCGTGATAGAGAATTCAAAATCTTCACGGATGCGGGTCGCGTCCAGCGTCCCTTATTCGTCATTGATGACAACCCCAACAGCCCGAACAAAGGAAACCTCGTCTTCAACGTGGACCACATCGAGAAATTGGAAAAAGACAAGAGCATCGATACCGCTGGTATGGACGAGGAAGATCGTGACAAGACACTCTATGGCTGGAATGGCCTGCTCTCAGACGGTGTCGTTGAGTACCTTGACGCAGAAGAGGAAGAAACAGCCATGATCGTCATGACCCCGGACGACCTGGAGGATCACCATCGTGCCAGTACTCTGACTGAACCAGAAGAGGATGAGGACGAATACGATGACGGTGTTGACATTGGAGCTATGGATGACGAAGAGGGTGAGAGGAAGAAATCGAAGGGACCAAGGATAGACAAGGACCCTCACAGGCGTGTGAAGCAGAAGCCGAACCCTCTCATCAAGTCCTACACGC Saccharata_petrophiles_CBS_142171 ATGATCCGGTGCGATACCCGCACGCCACGAAGATTTTCATCAATGGAGTCTGGGTTGGCGTACACCACGATCCTACTCAGCTGGTCCAGGTTGTCAGAAGCCTCCGTAGAGACGGCACGCTCACGCCTGAGCTCAGTCTGGTCCGTGATGTCCGTGATAGGGAATTCAAGATCTTCACCGATGCAGGCCGCGTCCAGCGTCCCTTGTTCGTTATTGATGACAACCCCAATAGCCCGAACAAGGGAAACCTTGTCTTCAATGGGGAACACATCGAGAAACTGGAAAAAGACAGGAATGTCGACACCTCCGGTATGGATGAGGAAGATCGTGATAAGACAATCTACGGCTGGAATGGCTTGCTGTCAGACGGTGTCGTGGAGTACCTTGACGCGGAAGAGGAAGAGACAGCCATGATTGTCATGACGCCGGATGACCTGGAGGATCACCACCGTGCCGCTACTTCGACCGAACCGGAAGAGGATGAGGACGAATACGATGACGTTGCTGATCTGGGAGCTATGGACGGCGAAGATGGCGAGAGAAAGAAATCAAAGGGACCAAAGATCGACAAGGATCCTCATAGGCGTGTGAAGCAAAAGCCGAACCCATTGATCAAGTCTTACACTC Saccharata_petrophilicola_CPC_29230 ACGATCCGGTGCGATACCCGCATGCTACGAAGATTTTCATCAACGGAGTCTGGGTTGGCGTACATCACGATCCTACTCAGCTTGTCCAGGTCGTCCGAAGCCTTCGTAGAGACGGCACGCTCACACCTGAACTCAGTCTGGTCCGTGATGTTCGTGATAGGGAGTTCAAAATCTTCACCGATGCAGGCCGAGTTCAGCGTCCCTTGTTCGTCGTTGATGACAACCCCAACAGCCCGAATAAGGGAAACCTTGTCTTCAACGGGGACCACATTGATAAACTGGAAGCAGATAGGATTGTCGACACCTCTGGTATGGATGAGGAAGATCGTGACAAGCAGATCTATGGCTGGAATGGCTTGCTGTCAGACGGTGTCGTTGAGTACCTTGACGCGGAAGAGGAAGAAACAGCGATGATTGTCATGACGCCGGATGACCTCGAGGATCATCACCGTGCCAGTACCGCGACGGAACCGGAAGAGGACGAGGAAGATTACGATGATGGTGCTGATATCGGAACCATGGACGGCGAAGACGGCGAGAGGAAGAAGTCAAAGGGACCAAGAATAGACAAGGATCCCCATAGGCGCGTGAAGCAAAAACCGAACCCCCTCATCAAGTCCTACACGC Saccharata_petrophilicola_CPC_29264 ACGATCCGGTGCGATACCCGCATGCTACAAAGATTTTCATCAACGGTGTCTGGGTTGGCGTACATCACGATCCTACTCAGCTTGTCCAGGTCGTCCGAAGCCTTCGTAGAGACGGCACGCTCACACCTGAACTCAGTCTGGTCCGTGATGTTCGTGATAGGGAGTTCAAAATCTTCACCGATGCAGGCCGAGTTCAGCGTCCCTTGTTCGTCGTTGATGACAACCCCAACAGCCCGAATAAGGGAAACCTTGTCTTCAACGGGGACCACATTGATAAACTGGAAGCAGATAGGATTGTCGACACCTCTGGTATGGATGAGGAAGATCGTGACAAGCAGATCTATGGCTGGAATGGCTTGCTGTCAGACGGTGTCGTTGAGTACCTTGACGCGGAAGAGGAAGAAACAGCGATGATTGTCATGACGCCGGATGACCTCGAGGATCATCACCGTGCCAGTACTGCGACGGAACCGGAAGAGGACGAGGAAGATTACGATGATGGTGCTGATATCGGAACCATGGACGGCGAAGACGGCGAGAGGAAGAAGTCAAAGGGACCAAGAATAGACAAGGATCCCCATAGGCGCGTGAAGCAAAAACCGAACCCCCTCATCAAGTCCTACACGC Saccharata_proteae_CBS_115206 ACGATCCAGTGCGATACCCGCATGCCACGAAGATCTTCATCAACGGAGTCTGGGTTGGTGTACATCACGATCCTACTCAGCTAGTCCAGGTTGTCCGAAGCCTCCGTAGAGATGGCACGCTCACGCCTGAGCTCAGTCTGGTTCGTGATGTTCGTGATAGAGAATTCAAAATCTTCACCGATGCGGGTCGCGTCCAGCGTCCCTTGTTCGTCATTGATGACAACCCCAACAGCCCGAACAAGGGAAACCTTGTCTTCAACGTGGACCACATCGAGAAATTGGAGAAAGACAAGAGTATCGATACCGCTGGTATGGATGAGGAAGATCGTGACAAAACACTCTACGGCTGGAATGGCCTGCTCTCAGACGGTGTCGTTGAGTACCTTGACGCAGAAGAGGAAGAAACAGCCATGATTGTCATGACCCCGGACGACCTGGAGGATCACCATCGTGCCAGTACTCTGACTGAACCGGAAGAGGAGGAGGATGAATACGATGACGGTGTTGACATTGGAGCTATGGATGACGAAGAGGGTGAGAGGAAGAAATCGAAGGGATCAAGAGTAGACAAGGACCCTCACAGGCGTGTGAAGCAGAAGCCGAATCCCCTCATCAAGTCCTACACGC Saccharata_proteae_CBS_115384 ACGATCCAGTGCGGTACCCGCATGCCACGAAGATCTTCATCAACGGAGTCTGGGTTGGTGTACATCACGATCCTACTCAGCTAGTCCAGGTTGTCCGAAGCCTCCGTAGAGATGGCACGCTCACGCCTGAGCTCAGTCTGGTTCGTGATGTTCGTGATAGAGAATTCAAAATCTTCACCGATGCGGGTCGCGTCCAGCGTCCCTTGTTCGTCATTGATGACAACCCCAACAGCCCGAACAAGGGAAACCTTGTCTTCAACGTGGACCACATCGAGAAATTGGAGAAAGACAAGAGTGTCGATACCGCTGGTATGGATGAGGAAGATCGTGACAAAACACTCTACGGCTGGAATGGCCTGCTCTCAGACGGTGTCGTTGAGTACCTTGACGCAGAAGAGGAAGAAACAGCCATGATTGTCATGACCCCGGACGACCTGGAGGATCACCATCGTGCCAGTACTCTGACTGAACCGGAAGAGGAGGAGGATGAATACGATGACGGTGTTGACATTGGAGCTATGGATGACGAAGAGGGTGAGAGGAAGAAATCGAAGGGATCAAGAGTAGACAAGGACCCTCACAGGCGTGTGAAGCAGAAGCCGAATCCCCTCATCAAGTCCTACACGC Saccharata_proteae_CBS_115490 ACGATCCAGTGCGGTACCCGCATGCCACGAAGATCTTCATCAACGGAGTCTGGGTTGGTGTACATCACGATCCTACTCAGCTAGTCCAGGTTGTCCGAAGCCTCCGTAGAGATGGCACGCTCACGCCTGAGCTCAGTCTGGTTCGTGATGTTCGTGATAGAGAATTCAAAATCTTCACCGATGCGGGTCGCGTCCAGCGTCCCTTGTTCGTCATTGATGACAACCCCAACAGCCCGAACAAGGGAAACCTCGTCTTCAACGTGGATCACATCGAGAAACTGGAGAAAGACAAGAGTATTGATACCGCTGGTATGGATGAGGAAGATCGTGACAAAACACTCTACGGCTGGAATGGCCTGCTCTCAGACGGTGTCGTTGAGTACCTTGACGCAGAAGAGGAAGAAACAGCCATGATTGTCATGACCCCGGACGACCTGGAGGATCACCATCGTGCCAGTACTCTGACTGAACCGGAAGAGGACGAGGACGAATACGATGACGGTGTTGACATTGGAGCTATGGATGACGAAGAGGGTGAGAGGAAGAAATCGAAGGGATCAAGAGTAGACAAGGACCCTCACAGGCGTGTGAAGCAGAAGCCGAATCCCCTCATCAAGTCCTACACGC Saccharata_proteae_CBS_115498 ACGATCCAGTGCGGTACCCGCATGCCACGAAGATCTTCATCAACGGAGTCTGGGTTGGTGTACATCACGATCCTACTCAGCTAGTCCAGGTTGTCCGAAGCCTCCGTAGAGATGGCACGCTCACGCCTGAGCTCAGTCTGGTTCGTGATGTTCGTGATAGAGAATTCAAAATCTTCACCGATGCGGGTCGCGTCCAGCGTCCCTTGTTCGTCATTGATGACAACCCCAACAGCCCGAACAAGGGAAACCTTGTCTTCAACGTGGACCACATCGAGAAATTGGAGAAAGACAAGAGTATCGATACCGCTGGTATGGATGAGGAAGATCGTGACAAAACACTCTACGGCTGGAATGGCCTGCTCTCAGACGGTGTCGTTGAGTACCTTGACGCAGAAGAGGAAGAAACAGCCATGATTGTCATGACCCCGGACGACCTGGAGGATCACCATCGTGCCAGTACTCTGACTGAACCGGAAGAGGAGGAGGATGAATACGATGACGGTGTTGACATTGGAGCTATGGATGACGAAGAGGGTGAGAGGAAGAAATCGAAGGGATCAAGAGTAGACAAGGACCCTCACAGGCGTGTGAAGCAGAAGCCGAATCCCCTCATCAAGTCCTACACGC Saccharata_proteae_CBS_116174 ACGATCCAGTGCGATACCCGCATGCCACGAAGATCTTCATCAACGGAGTCTGGGTTGGTGTACATCACGATCCTACTCAGCTAGTCCAGGTTGTCCGAAGCCTCCGTAGAGATGGCACGCTCACGCCTGAGCTCAGTCTGGTTCGTGATGTTCGTGATAGAGAATTCAAAATCTTCACCGATGCGGGTCGCGTCCAGCGTCCCTTGTTCGTCATTGATGACAACCCCAACAGCCCGAACAAGGGAAACCTTGTCTTCAACGTGGACCACATCGAGAAATTGGAGAAAGACAAGAGTATCGATACCGCTGGTATGGATGAGGAAGATCGTGACAAAACACTCTACGGCTGGAATGGCCTGCTCTCAGACGGTGTCGTTGAGTACCTTGACGCAGAAGAGGAAGAAACAGCCATGATTGTCATGACCCCGGACGACCTGGAGGATCACCATCGTGCCAGTACTCTGACTGAACCGGAAGAGGAGGAGGATGAATACGATGACGGTGTTGACATTGGAGCTATGGATGACGAAGAGGGTGAGAGGAAGAAATCGAAGGGATCAAGAGTAGACAAGGACCCTCACAGGCGTGTGAAGCAGAAGCCGAATCCCCTCATCAAGTCCTACACGC Saccharata_proteae_CBS_119218 ACGATCCAGTGCGGTACCCGCATGCCACGAAGATCTTCATCAACGGAGTCTGGGTTGGTGTACATCACGATCCTACTCAGCTAGTCCAGGTTGTCCGAAGCCTCCGTAGAGATGGCACGCTCACGCCTGAGCTCAGTCTGGTTCGTGATGTTCGTGATAGAGAATTCAAAATCTTCACCGATGCGGGTCGCGTCCAGCGTCCATTGTTCGTCATTGATGACAACCCCAACAGCCCGAACAAGGGAAACCTTGTCTTCAACGTGGACCACATCGAGAAATTGGAGAAAGACAAGAGTATCGATACCGCTGGTATGGATGAGGAAGATCGTGACAAAACACTCTACGGCTGGAATGGCCTGCTCTCAGACGGTGTCGTTGAGTACCTTGACGCAGAAGAGGAAGAAACAGCCATGATTGTCATGACCCCGGACGACCTGGAGGATCACCATCGTGCCAGTACTCTGACTGAACCGGAAGAGGAGGAGGATGAATACGATGACGGTGTTGACATTGGAGCTATGGATGACGAAGAGGGTGAGAGGAAGAAATCGAAGGGATCAAGAGTAGACAAGGACCCTCACAGGCGTGTGAAGCAGAAGCCGAATCCCCTCATCAAGTCCTACACGC Saccharata_proteae_CBS_121406 ACGATCCAGTGCGGTACCCGCATGCCACGAAGATCTTCATCAACGGAGTCTGGGTTGGTGTACATCACGATCCTACTCAGCTAGTCCAGGTTGTCCGAAGCCTCCGTAGAGATGGCACGCTCACGCCTGAGCTCAGTCTGGTTCGTGATGTTCGTGATAGAGAATTCAAAATCTTCACCGATGCGGGTCGCGTCCAGCGTCCCTTGTTCGTCATTGATGACAACCCCAACAGCCCGAACAAGGGAAACCTTGTCTTCAACGTGGACCACATCGAGAAATTGGAGAAAGACAAGAGTATCGATACCGCTGGTATGGATGAGGAAGATCGTGACAAAACACTCTACGGCTGGAATGGCCTGCTCTCAGACGGTGTCGTTGAGTACCTTGACGCAGAAGAGGAAGAAACAGCCATGATTGTCATGACCCCGGACGACCTGGAGGATCACCATCGTGCCAGTACTCTGACTGAACCGGAAGAGGAGGAGGATGAATACGATGACGGTGTTGACATTGGAGCTATGGATGACGAAGAGGGTGAGAGGAAGAAATCGAAGGGATCAAGAGTAGACAAGGACCCTCACAGGCGTGTGAAGCAGAAGCCGAATCCCCTCATCAAGTCCTACACGC Saccharata_proteae_CBS_121410 ACGATCCAGTGCGGTACCCGCATGCCACGAAGATCTTCATCAACGGAGTCTGGGTTGGTGTACATCACGATCCTACTCAGCTAGTCCAGGTTGTCCGAAGCCTCCGTAGAGATGGCACGCTCACGCCTGAGCTCAGTCTGGTTCGTGATGTTCGTGATAGAGAATTCAAAATCTTCACCGATGCGGGTCGCGTCCAGCGTCCCTTGTTCGTCATTGATGACAACCCCAACAGCCCGAACAAGGGAAACCTTGTCTTCAACGTGGACCACATCGAGAAATTGGAGAAAGACAAGAGTATCGATACCGCTGGTATGGATGAGGAAGATCGTGACAAAACACTCTACGGCTGGAATGGCCTGCTCTCAGACGGTGTCGTTGAGTACCTTGACGCAGAAGAGGAAGAAACAGCCATGATTGTCATGACCCCGGACGACCTGGAGGATCACCATCGTGCCAGTACTCTGACTGAACCGGAAGAGGAGGAGGATGAATACGATGACGGTGTTGACATTGGAGCTATGGATGACGAAGAGGGTGAGAGGAAGAAATCGAAGGGATCAAGAGTAGACAAGGACCCTCACAGGCGTGTGAAGCAGAAGCCGAATCCCCTCATCAAGTCCTACACGC ; END; BEGIN mrbayes; outgroup Aplosporella_hesperidica_CBS_732.79; charset locus1 = 1 -627; partition AllLoci = 1 : locus1; log start filename = SaccharataRPB2MB.log; END; BEGIN mrbayes; set partition = AllLoci; prset applyto = ( 1 ) statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); Lset applyto = ( 1 ) nst = 6 rates = gamma; unlink shape = ( all ) pinvar = ( all ) statefreq = ( all ) revmat = ( all ); mcmcp ngen = 1000000000 nchains = 4 printfreq = 10 temp = 0.2 samplefreq = 10 savebrlens = yes stoprule = yes stopval = 0.01 Relburnin = yes BurninFrac = 0.25 filename = SaccharataRPB2MB; mcmc; sump; sumt; END; BEGIN TREES; Title 'Trees from "S10B_SaccharataRPB2MB.nexus"'; ID 01761deda4a079; LINK Taxa = Taxa; TRANSLATE [0] 1 Aplosporella_hesperidica_CBS_732.79, [1] 2 Saccharata_acaciae_CBS_143167, [2] 3 Saccharata_acaciae_CPC_32607, [3] 4 Saccharata_banksiae_CBS_142137, [4] 5 Saccharata_capensis_CBS_122693, [5] 6 Saccharata_daviesiae_CBS_142120, [6] 7 Saccharata_grevilleae_CBS_145998, [7] 8 Saccharata_grevilleae_CPC_29228, [8] 9 Saccharata_hakeae_CBS_142167, [9] 10 Saccharata_hakeae_CBS_142168, [10] 11 Saccharata_hakeicola_CBS_142124, [11] 12 Saccharata_hakeicola_CBS_142172, [12] 13 Saccharata_hakeigena_CBS_143405, [13] 14 Saccharata_hakeiphila_CBS_142169, [14] 15 Saccharata_hawaiiensis_CBS_111787, [15] 16 Saccharata_hawaiiensis_CBS_114570, [16] 17 Saccharata_hawaiiensis_was_protearum_CBS_114569, [17] 18 Saccharata_intermedia_CBS_125546, [18] 19 Saccharata_kirstenboschensis_CBS_123537, [19] 20 Saccharata_lambertiae_CBS_142123, [20] 21 Saccharata_leucospermi_CBS_122694, [21] 22 Saccharata_petrophiles_CBS_142171, [22] 23 Saccharata_petrophilicola_CPC_29230, [23] 24 Saccharata_petrophilicola_CPC_29264, [24] 25 Saccharata_proteae_CBS_115206, [25] 26 Saccharata_proteae_CBS_115384, [26] 27 Saccharata_proteae_CBS_115490, [27] 28 Saccharata_proteae_CBS_115498, [28] 29 Saccharata_proteae_CBS_116174, [29] 30 Saccharata_proteae_CBS_119218, [30] 31 Saccharata_proteae_CBS_121406, [31] 32 Saccharata_proteae_CBS_121410; TREE Fig._S10B._Bayesian_phylogeny_of_the_Saccharata_rpb2_alignment. = (1:0.4871892,(13:0.02633083,(9:0.00249421,10:0.001096257):0.01303421,(14:0.01019041,(2:0.007053131,3:0.005635893):0.00561009):0.005060237):0.2147996,((((23:0.002391717,24:0.003929526):0.06456594,(11:0.007352933,12:0.002161531):0.05710815):0.02101781,((5:0.001029451,19:0.01421113):0.004071018,((21:0.0009452891,18:0.00110346):0.02353511,((15:0.001034417,16:0.001032875,17:0.003814902):0.005991128,(27:0.005247715,(30:0.002499871,31:0.001049595,32:0.0009315923,26:0.002326557,28:0.001010296,(25:0.001068779,29:0.001046156):0.002442723):0.005694559):0.006800668):0.009209567):0.004075):0.06433376):0.01233006,((6:0.0494791,4:0.01844829):0.007957398,22:0.03317945,(20:0.008885012,(8:0.001791897,7:0.002580767):0.008032985):0.009547356):0.01558237):0.08250305); END; BEGIN TREES; Title 'Trees from "S10B_SaccharataRPB2MB.nexus"'; ID 01761deda4a480; LINK Taxa = Taxa; TRANSLATE [0] 1 Aplosporella_hesperidica_CBS_732.79, [1] 2 Saccharata_acaciae_CBS_143167, [2] 3 Saccharata_acaciae_CPC_32607, [3] 4 Saccharata_banksiae_CBS_142137, [4] 5 Saccharata_capensis_CBS_122693, [5] 6 Saccharata_daviesiae_CBS_142120, [6] 7 Saccharata_grevilleae_CBS_145998, [7] 8 Saccharata_grevilleae_CPC_29228, [8] 9 Saccharata_hakeae_CBS_142167, [9] 10 Saccharata_hakeae_CBS_142168, [10] 11 Saccharata_hakeicola_CBS_142124, [11] 12 Saccharata_hakeicola_CBS_142172, [12] 13 Saccharata_hakeigena_CBS_143405, [13] 14 Saccharata_hakeiphila_CBS_142169, [14] 15 Saccharata_hawaiiensis_CBS_111787, [15] 16 Saccharata_hawaiiensis_CBS_114570, [16] 17 Saccharata_hawaiiensis_was_protearum_CBS_114569, [17] 18 Saccharata_intermedia_CBS_125546, [18] 19 Saccharata_kirstenboschensis_CBS_123537, [19] 20 Saccharata_lambertiae_CBS_142123, [20] 21 Saccharata_leucospermi_CBS_122694, [21] 22 Saccharata_petrophiles_CBS_142171, [22] 23 Saccharata_petrophilicola_CPC_29230, [23] 24 Saccharata_petrophilicola_CPC_29264, [24] 25 Saccharata_proteae_CBS_115206, [25] 26 Saccharata_proteae_CBS_115384, [26] 27 Saccharata_proteae_CBS_115490, [27] 28 Saccharata_proteae_CBS_115498, [28] 29 Saccharata_proteae_CBS_116174, [29] 30 Saccharata_proteae_CBS_119218, [30] 31 Saccharata_proteae_CBS_121406, [31] 32 Saccharata_proteae_CBS_121410; TREE 'Fig. S10B (bootstrap support values overlayed). First of ten equally most parsimonious trees of the Saccharata rpb2 alignment.' = (((13:9,((9:1,10:0.0):7,(14:5,(2:3,3:2):4):3):7):62,(((23:1,24:2):25,((((6:20,4:9):14,(20:3,(8:0.0,7:0.0):5):5):3,22:18):14,((5:0.0,((21:0.0,18:0.0):13,((15:0.0,16:0.0,17:2):5,(27:3,(30:1,31:0.0,32:0.0,26:1,28:0.0,(25:0.0,29:0.0):1):3):2):5):5):3,19:9):31):19):18,(11:2,12:2):24):73):56,1:123):0.0; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 627; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 627; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 627; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1606915066140; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6653113323959378787; tell It; setDefaultOrder 31 4 5 11 16 10 15 14 1 2 8 9 0 3 20 21 22 18 19 13 17 12 6 7 29 27 23 28 30 24 25 26; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2841288486481356546; mqVersion 361; checksumv 0 3 402821447 null getNumChars 627 numChars 627 getNumTaxa 32 numTaxa 32 short true bits 15 states 15 sumSquaresStatesOnly 338625.0 sumSquares 338625.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 259; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1727 1235; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2841288486481356546 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 515; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1468 1163; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;