#NEXUS [written Wed Dec 02 14:20:59 CET 2020 by Mesquite version 3.61 (build 927) at 2017-15-inch-MacBook-Pro.local/192.168.2.86] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=39; TAXLABELS Aplosporella_hesperidica_CBS_732.79 Saccharata_acaciae_CBS_143167 Saccharata_acaciae_CPC_32607 Saccharata_banksiae_CBS_142137 Saccharata_capensis_CBS_122693 Saccharata_daviesiae_CBS_142120 Saccharata_epacridis_CBS_143408 Saccharata_eucalypti_CBS_140665 Saccharata_grevilleae_CBS_145998 Saccharata_grevilleae_CPC_29228 Saccharata_grevilleae_CPC_29521 Saccharata_hakeae_CBS_142121 Saccharata_hakeae_CBS_142167 Saccharata_hakeae_CBS_142168 Saccharata_hakeicola_CBS_142124 Saccharata_hakeicola_CBS_142172 Saccharata_hakeicola_CBS_142173 Saccharata_hakeigena_CBS_143405 Saccharata_hakeiphila_CBS_142169 Saccharata_hawaiiensis_CBS_111787 Saccharata_hawaiiensis_CBS_114570 Saccharata_hawaiiensis_was_protearum_CBS_114569 Saccharata_intermedia_CBS_125546 Saccharata_kirstenboschensis_CBS_123537 Saccharata_lambertiae_CBS_142123 Saccharata_leucospermi_CBS_122694 Saccharata_petrophiles_CBS_142138 Saccharata_petrophiles_CBS_142171 Saccharata_petrophilicola_CPC_29230 Saccharata_petrophilicola_CPC_29264 Saccharata_proteae_CBS_115206 Saccharata_proteae_CBS_115384 Saccharata_proteae_CBS_115490 Saccharata_proteae_CBS_115498 Saccharata_proteae_CBS_116174 Saccharata_proteae_CBS_119218 Saccharata_proteae_CBS_121406 Saccharata_proteae_CBS_121410 Saccharata_proteae_CBS_121422 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=302; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Aplosporella_hesperidica_CBS_732.79 ?????????????????????????CAGTAT--------TTTCCCATGGCGGGGCCCTTGGTGGGGTCCTT-----TTGCGCTAAGCCTCGCTCGGCTCGGCTACACC--CACCACCATTTTGCGA------------------------------CCGTCGCTGACC--CCGCTCCAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACCCCGAAGTAC Saccharata_acaciae_CBS_143167 TTTCGCCTCCCTCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTTCCGCGCTAGTCCCGTTTCGGGGCTCGGT-AA-ACCGCCACACACT--G-CCACCCCGCGTGCACG--CCCCCTCAGATCTCGGTCGCACCACC----------ACCCGCCCTCACCTCGCTGACTC-GCCTCGCAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGCGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTTGAGACTCCCAAGTAC Saccharata_acaciae_CPC_32607 TTTGGCCTCTCTCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTTCGGCGCTAGTGCCGTTTCGGGGCTCGGT-AA-AGCGCCACACACT--G-CCACCCCGCGTGCACG--CCCCCTCAGATCTCGGCCGCACCACCACC-------ACCCGCCTTCACCTCGCTGACTC-GCCTCGCAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTTGAGACTCCCAAGTAC Saccharata_banksiae_CBS_142137 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTTCTGCGCTAGTCCCATCTCGGGGCTCGGC-AA-AACACCACGAGCTCTGCTCACCCCGCGTGCACC--CTCCATCATATCCACAGCTCTCAGTCCT-------CGTCTGCCCTCCCGATGCTGACTCGCCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTTGAGACTCCCAAGTAC Saccharata_capensis_CBS_122693 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTCGCACACTAGTCTCCTTTCGGGGCTCGGC-AA-ACCACCATGAGCGCTGCCCGTCCCGCGTGCACG--CCCCGAAACTGCTTCACGCCTTGGGC------------CTCTATTCACGATGCTGACTC-TCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACTCCCAAGTAC Saccharata_daviesiae_CBS_142120 TTTCGCCTCTCGCA-TCGGAGGGG-CAGTGTTGGTGGGGTTTTCTGCGCTAGTCCCATCTCGGGGCTCGGC-AA-AACACCACCAGCTCTGCTCACCCCGCGTGCACG--CCCCTACAAATCCATATGCCTCGCTT----------CCATGGCTTCGCAATGCTGACTC-CCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTTGAGACTCCCAAGTAC Saccharata_epacridis_CBS_143408 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTTGCGCGCTAGTCCCATCTCGGGGCTCGGC-AA-AACACCATCAGCTCTGCTCACCCCGCGTGCACG--CCCCATCGTCGTCACGGGCCTCCGCC----------CTCTGCCTTCACGATGCTGACCC-CCGCCGCAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTTGAGACTCCCAAGTAC Saccharata_eucalypti_CBS_140665 TTTCGCCTCTCGCA-CCGGAGGGC-CAGAGTTGGTGGGGTTTTCCGCGCTAGTCCCGTTCGGGGGCTCGGCAAACACCACCTTGCGCTCTGCTCACCGTCAGCGCACGCACACGCCCACCGCATTCCTCTCTCCCCCAGCGACCGCGTC-ATGTCCACGCCGCTGACTC-GCCACACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTTGAGACTCCCAAGTAC Saccharata_grevilleae_CBS_145998 TTTCGCCTCTCGCA-TCGGAGGGG-CAGTGTTGGTGGGGTTTTCTGCGCTAGTCCCTTCTCGGGACTCGGC-AA-AACACCATCAGCTCTGCTCACCCCGCGTGCACG--CCCCATCATATCCGCGGGCCTCGCTC----------TTCTGCCTTCACGATGCTGACTC-CCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTTGAGACTCCCAAGTAC Saccharata_grevilleae_CPC_29228 TTTCGCCTCTCGCA-TCGGAGGGG-CAGTGTTGGTGGGGTTTTCTGCGCTAGTCCCTTCTCGGGACTCGGC-AA-AACACCATCAGCTCTGCTCACCCCGCGTGCACG--CCCCATCGTATTCACGGGCCTCGCTC----------TTCTGCCTTCACGATGCTGACTC-CCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTTGAGACTCCCAAGTAC Saccharata_grevilleae_CPC_29521 TTTCGCCTCTCGCA-TCGGAGGGG-CAGTGTTGGTGGGGTTTTCTGCGCTAGTCCCTTCTCGGGACTCGGC-AA-AACACCATCAGCTCTGCTCACCCCGCGTGCACG--CCCCATCATATCCGCGGGCCTCGCTC----------TTCTGCCTTCACGATGCTGACTC-CCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTTGAGACTCCCAAGTAC Saccharata_hakeae_CBS_142121 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTTTCGCGCTAGTCCCGTTTCGGGGCTCGGT-AA-ACCGCCACACACT--G-CCACCCCGCGTGCACG--CCCCCTCAGATCTCGGTCGCACCACA----------ACCCGCCTTCGCCTGGCTGACTC-GCCTCGCAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTGTGGAAGTTTGAGACTCCCAAGTAC Saccharata_hakeae_CBS_142167 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTTTCGCGCTAGTCCCGTTTCGGGGCTCGGT-AA-ACCGCCACACACT--G-CCACCCCGCGTGCACG--CCCCCTCAGATCTCGGTCGCACCACA----------ACCCGCCTTCGCCTGGCTGACTC-GCCTCGCAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTGTGGAAGTTTGAGACTCCCAAGTAC Saccharata_hakeae_CBS_142168 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTTTCGCGCTAGTCCCGTTTCGGGGCTCGGT-AA-ACCGCCACACACT--G-CCACCCCGCGTGCACG--CCCCCTCAGATCTCGGTCGCACCACA----------ACCCGCCTTCGCCTGGCTGACTC-GCCTCGCAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTGTGGAAGTTTGAGACTCCCAAGTAC Saccharata_hakeicola_CBS_142124 TTTCGCCTCTCGCA-TCGGAGGGG-CAGAGTTGGTGGGGTTTTCTGCGCTAGTCCCGCTTCGGGGCTCGGC-AA-AACACCATGAGCTCTGCCCACCCCGCGTGCACG--ACCCAGCACATCCTCTGGCCTCAGCGCCACCA--GTTTTGCACCTTCACCTGCTGACTC-CCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCCCTCTGGAAGTTTGAGACTCCCAAGTAC Saccharata_hakeicola_CBS_142172 TTTCGCCTCTCGCA-TCGGAGGGG-CAGAGTTGGTGGGGTTTTCTGCGCTAGTCCCGCTTCGGGGCTCGGC-AA-AACGCCATGAGCTCTGCCCACCCCGCGTGCACG--ACCCAGCACATCCTCTGGCCTCAGCGCCACCA--GTTTTGCACCTTCAGATGCTGACTC-CCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCCCTCTGGAAGTTTGAGACTCCCAAGTAC Saccharata_hakeicola_CBS_142173 TTTCGCCTCTCGCA-TCGGAGGGG-CAGAGTTGGTGGGGTTTTCTGCGCTAGTCCCGCTTCGGGGCTCGGC-AA-AACACCATGAGCTCTGCCCACCCCGCGTGCACG--ACCCAGCACATCCTCTGGCCTCAGCGCCACCA--GTTTTGCACCTTCAGATGCTGACTC-CCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCCCTCTGGAAGTTTGAGACTCCCAAGTAC Saccharata_hakeigena_CBS_143405 TTTCGCCTCTCGTG-CCGGAGGGG-CAGTGTTGGTGGGGTTTTCCGCGCTAGTCTCGTTTCGGGGCTCGGT-AA-ACCGCCACTCTGT------CCCCCGCGTGCACG--CCCCCTCAGATCTTGGTCGCACCACC-----------CCCGCCTTCGCCTTGCTGACTT-GCCCCGCAGGAAGCCGCCGAGCTCGGAAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTTGAGACTCCCAAGTAC Saccharata_hakeiphila_CBS_142169 TTTCGCCTCTCGCA-CCCGAGGGGACAGTGTTGGTGGGGTTTTCCGCGCTAGTTCCGTTTCGGGGCTCGGT-AA-ACCGCCACACACT--G-CAACCCCGCGTGCACG--CCCCCTCAGATGTCGGT-----CACG----------GCCCGCCTTCACCTTGCTGACTC-GCCTCGCAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTTGAGACTCCCAAGTAC Saccharata_hawaiiensis_CBS_111787 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTCGCACGCTAGTCTCATTTCGGGGCTCGGC-AA-AACACCATGAGCTCTGCCCGCCCCGCGTGCTCG--CCCCGACACTGCTTCATGTCTTGGTCCTCTCTCTCTCTCTCTCTCAACGATGCTAACTC-TCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACTCCCAAGTAC Saccharata_hawaiiensis_CBS_114570 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTCGCACGCTAGTCTCATTTCGGGGCTCGGC-AA-AACACCATGAGCTCTGCCCGCCCCGCGTGCTCG--CCCCGACACTGCTTCATGTCTTGGTCCTCTCTCTCTCTCTCTCTCAACGATGCTAACTC-TCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACTCCCAAGTAC Saccharata_hawaiiensis_was_protearum_CBS_114569 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTCGCACGCTAGTCTCATTTCGGGGCTCGGC-AA-AACACCATGAGCTCTGCCCGCCCCGCGTGCTCG--CCCCGACACTGCTTCATGTCTTGGTC----CTCTCTCTCTCTCTCAACGATGCTAACTC-TCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACTCCCAAGTAC Saccharata_intermedia_CBS_125546 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTCGCACGCTAGTCTCATTTCGGGGCTCGGCAAA-AACACCATGAGCTCTGCCCGCCCTGCGTGCACGC-CCCCGACACTGCTTCATGCCTTGGTC------------CTCTGCTCACTATGCTAACTC-TCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACTCCCAAGTAC Saccharata_kirstenboschensis_CBS_123537 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGCTTTCGCACGCTAGTCTCATTTCGGGGCTCGGC-AA-AACACCATGAGCTCTGCCCGCCCCGCGTGCACG--CCCCAACACTGCTTCATGTCTTAGTC------------CTCTGTTCACAATGCTAAC---TCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACTCCCAAGTAC Saccharata_lambertiae_CBS_142123 TTTCGCCTCCCGCA-TCGGAGGGG-CAGAGTTGGTGGGGTTTTGTGCGCTAGTCCCTTCTGGGGACTCGGC-AA-AACACCATCAGCTCTGCTCACGCCGCGTGCACGCCCCCCATGATATCCACGGGCCTCGCTC----------CTCTGCCTTCACGATGCTGACTC-CCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTTGAGACTCCCAAGTAC Saccharata_leucospermi_CBS_122694 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTCGCACGCTAGTCTCATTTCGGGGCTCGGC-AA-ACCACCATGAGCTCTGCCCGCCTCGCGTGCACC--CCCCGGAACTGCTTCACGCCTTCGTC------------CTCTGTTCACGATGCTGACTC-TCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACTCCCAAGTAC Saccharata_petrophiles_CBS_142138 TTTCGCCTCTCGCACCCGGAGGGG-CAGTGTTGGTGGGGTTTTGCGCGCTAGTCCCATCTC-GGGCTCGCC-AA-AACACCATCAGCTCTGCTCACCCCGCGTGCACG--CCCCATCATCTTCACAGGCCTCACTC-----------TCCGCCTTCACGATGCTGACTC-CCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTTGAGACTCCCAAGTAC Saccharata_petrophiles_CBS_142171 TTTCGCCTCTCGCACCCGGAGGGG-CAGTGTTGGTGGGGTTTTGCGCGCTAGTCCCATCTC-GGGCTCGCC-AA-AACACCATCAGCTCTGCTCACCCCGCGTGCACG--CCCCATCATCTTCACAGGCCTCACTC-----------TCCGCCTTCACGATGCTGACTC-CCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTTGAGACTCCCAAGTAC Saccharata_petrophilicola_CPC_29230 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTTTCGCGCTAGTCCCCTCTTGGGGCTCGGCAAA-AACACCTCGAGCTCTGCCCACCCCGCGTGCACG--CC----CGTCGCATCAAAGCCCACTC------------CCGCCCGCACAATGCTGACCC-CCGCCACAGGAAGCCGCCGAGCTCGGAAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCCGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTTGAGACTCCCAAGTAC Saccharata_petrophilicola_CPC_29264 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTTTCGCGCTAGTCCCCTCTTGGGGCTCGGCAAA-AACACCTCGAGCTCTGCCCACCCCGCGTGCACG--CC----CGTCGCATCAAAGCCCACTC------------CCGCCCGCACACTGCTGACCT-CCGCCACAGGAAGCCGCCGAGCTCGGAAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCCGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTTGAGACTCCCAAGTAC Saccharata_proteae_CBS_115206 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTCGCACGCTTTTCTCATTTCGGGGCTCGGC-AA-AACACCATGAGCTCTGCCCGCCCCGCGTGCACG--CCCCGACACTGCTTCATGTCTTGGTC--------CTCTCTCTCTCAACGATGCTAACTC-TCGCCACAGGAAGCCGCCAAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAGCGCGGTATCACC??????????????????????????????????????? Saccharata_proteae_CBS_115384 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTCGCACGCTAGTCTCATTTCGGGGCTCGGC-AA-AACACCATGAGCTCTGCCCGCCCCGCGTGCACG--CCCCGACACTGCTTCATGTCTTGGTC----------CTCTCTCTCAACGATGCTAACTC-TCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACTCCCAAGTAC Saccharata_proteae_CBS_115490 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTCGCACGCTAGTCTCATTTCGGGGCTCGGC-AA-AACACCATGAGCTCTGCCCGCCCCGCGTGCACG--CCCCGACACTGCTTCATGTCTTGG--------------CCCTCTCAACGACGCTGACTC-TCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACTCCCAAGTAC Saccharata_proteae_CBS_115498 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTCGCACGCTAGTCTCATTTCGGGGCTCGGC-AA-AACACCATGAGCTCTGCCCGCCCCGCGTGCACG--CCCCGACACTGCTTCATGTCTTGGTC----------CTCTCTCTCAACGATGCTAACTC-TCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACTCCCAAGTAC Saccharata_proteae_CBS_116174 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTCGCACGCTAGTCTCATTTCGGGGCTCGGC-AA-AACACCATGAGCTCTGCCCGCCCCGCGTGCACG--CCCCGACACTGCTTCATGTCTTGGTC--------CTCTCTCTCTCAACGATGCTAACTC-TCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACTCCCAAGTAC Saccharata_proteae_CBS_119218 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTCGCACGCTAGTCTCATTTCGGGGCTCGGC-AA-AACACCATGAGCTCTGCCCGCCCCGCGTGCACG--CCCCGACACTGCTTCATGTCTTGGTC----------CTCTCTCTCAACGATGCTAACTC-TCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACTCCCAAGTAC Saccharata_proteae_CBS_121406 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTCGCACGCTAGTCTCATTTCGGGGCTCGGC-AA-AACACCATGAGCTCTGCCCGCCCCGCGTGCACG--CCCCGACACTGCTTCATGTCTTGGTC--------CTCTCTCTCTCAACGATGCTAACTC-TCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACTCCCAAGTAC Saccharata_proteae_CBS_121410 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTCGCACGCTAGTCTCATTTCGGGGCTCGGC-AA-AACACCATGAGCTCTGCCCGCCCCGCGTGCACG--CCCCGACACTGCTTCATGTCTTGGTC--------CTCTCTCTCTCAACGATGCTAA--C-TCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACTCCCAAGTAC Saccharata_proteae_CBS_121422 TTTCGCCTCTCGCA-CCGGAGGGG-CAGTGTTGGTGGGGTTTCGCACGCTAGTCTCATTTCGGGGCTCGGC-AA-AACACCATGAGCTCTGCCCGCCACGCGTGCACG--CCCCGACACTGCTTCATGTCTTGGTC--------CTCTCTCTCTCAACGATGCTAACTC-TCGCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAACGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACTCCCAAGTAC ; END; BEGIN mrbayes; outgroup Aplosporella_hesperidica_CBS_732.79; charset locus1 = 1 -302; partition AllLoci = 1 : locus1; log start filename = SaccharataTEFMB.log; END; BEGIN mrbayes; set partition = AllLoci; prset applyto = ( 1 ) statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); Lset applyto = ( 1 ) nst = 2 rates = gamma; unlink shape = ( all ) pinvar = ( all ) statefreq = ( all ) revmat = ( all ); mcmcp ngen = 1000000000 nchains = 4 printfreq = 10 temp = 0.2 samplefreq = 10 savebrlens = yes stoprule = yes stopval = 0.01 Relburnin = yes BurninFrac = 0.25 filename = SaccharataTEFMB; mcmc; sump; sumt; END; BEGIN TREES; Title 'Trees from "S10C_SaccharataTEFMB.nexus"'; ID 01761dedd36581; LINK Taxa = Taxa; TRANSLATE [0] 1 Aplosporella_hesperidica_CBS_732.79, [1] 2 Saccharata_acaciae_CBS_143167, [2] 3 Saccharata_acaciae_CPC_32607, [3] 4 Saccharata_banksiae_CBS_142137, [4] 5 Saccharata_capensis_CBS_122693, [5] 6 Saccharata_daviesiae_CBS_142120, [6] 7 Saccharata_epacridis_CBS_143408, [7] 8 Saccharata_eucalypti_CBS_140665, [8] 9 Saccharata_grevilleae_CBS_145998, [9] 10 Saccharata_grevilleae_CPC_29228, [10] 11 Saccharata_grevilleae_CPC_29521, [11] 12 Saccharata_hakeae_CBS_142121, [12] 13 Saccharata_hakeae_CBS_142167, [13] 14 Saccharata_hakeae_CBS_142168, [14] 15 Saccharata_hakeicola_CBS_142124, [15] 16 Saccharata_hakeicola_CBS_142172, [16] 17 Saccharata_hakeicola_CBS_142173, [17] 18 Saccharata_hakeigena_CBS_143405, [18] 19 Saccharata_hakeiphila_CBS_142169, [19] 20 Saccharata_hawaiiensis_CBS_111787, [20] 21 Saccharata_hawaiiensis_CBS_114570, [21] 22 Saccharata_hawaiiensis_was_protearum_CBS_114569, [22] 23 Saccharata_intermedia_CBS_125546, [23] 24 Saccharata_kirstenboschensis_CBS_123537, [24] 25 Saccharata_lambertiae_CBS_142123, [25] 26 Saccharata_leucospermi_CBS_122694, [26] 27 Saccharata_petrophiles_CBS_142138, [27] 28 Saccharata_petrophiles_CBS_142171, [28] 29 Saccharata_petrophilicola_CPC_29230, [29] 30 Saccharata_petrophilicola_CPC_29264, [30] 31 Saccharata_proteae_CBS_115206, [31] 32 Saccharata_proteae_CBS_115384, [32] 33 Saccharata_proteae_CBS_115490, [33] 34 Saccharata_proteae_CBS_115498, [34] 35 Saccharata_proteae_CBS_116174, [35] 36 Saccharata_proteae_CBS_119218, [36] 37 Saccharata_proteae_CBS_121406, [37] 38 Saccharata_proteae_CBS_121410, [38] 39 Saccharata_proteae_CBS_121422; TREE Fig._S10C._Bayesian_phylogeny_of_the_Saccharata_tef1_alignment. = (1:0.3095631,23:0.01265106,24:0.01275957,((8:0.146882,(18:0.0442355,(12:0.00240905,13:0.002271454,14:0.002343311):0.01735486,19:0.02316713,(2:0.01271677,3:0.02032392):0.008734269):0.07786785):0.05983608,((((29:0.002694639,30:0.008614189):0.08179342,7:0.02390245):0.01239929,(27:0.002240984,28:0.002418387):0.009338705):0.01624215,(6:0.04657063,(25:0.02447891,(10:0.008706385,(9:0.002189931,11:0.002264777):0.005511948):0.004562331):0.01395156):0.009073633,4:0.0300663):0.01683403,(15:0.008273723,16:0.005360249,17:0.002185083):0.07869732):0.06483338,((20:0.002019191,21:0.001996479,22:0.002140923):0.005451951,33:0.01155334,36:0.002206735,37:0.002164724,38:0.002224401,32:0.002197765,34:0.002276068,39:0.005069649,31:0.01868277,35:0.00221499):0.01362503,(5:0.02354189,26:0.0140544):0.01434261); END; BEGIN TREES; Title 'Trees from "S10C_SaccharataTEFMB.nexus"'; ID 01761dedd36982; LINK Taxa = Taxa; TRANSLATE [0] 1 Aplosporella_hesperidica_CBS_732.79, [1] 2 Saccharata_acaciae_CBS_143167, [2] 3 Saccharata_acaciae_CPC_32607, [3] 4 Saccharata_banksiae_CBS_142137, [4] 5 Saccharata_capensis_CBS_122693, [5] 6 Saccharata_daviesiae_CBS_142120, [6] 7 Saccharata_epacridis_CBS_143408, [7] 8 Saccharata_eucalypti_CBS_140665, [8] 9 Saccharata_grevilleae_CBS_145998, [9] 10 Saccharata_grevilleae_CPC_29228, [10] 11 Saccharata_grevilleae_CPC_29521, [11] 12 Saccharata_hakeae_CBS_142121, [12] 13 Saccharata_hakeae_CBS_142167, [13] 14 Saccharata_hakeae_CBS_142168, [14] 15 Saccharata_hakeicola_CBS_142124, [15] 16 Saccharata_hakeicola_CBS_142172, [16] 17 Saccharata_hakeicola_CBS_142173, [17] 18 Saccharata_hakeigena_CBS_143405, [18] 19 Saccharata_hakeiphila_CBS_142169, [19] 20 Saccharata_hawaiiensis_CBS_111787, [20] 21 Saccharata_hawaiiensis_CBS_114570, [21] 22 Saccharata_hawaiiensis_was_protearum_CBS_114569, [22] 23 Saccharata_intermedia_CBS_125546, [23] 24 Saccharata_kirstenboschensis_CBS_123537, [24] 25 Saccharata_lambertiae_CBS_142123, [25] 26 Saccharata_leucospermi_CBS_122694, [26] 27 Saccharata_petrophiles_CBS_142138, [27] 28 Saccharata_petrophiles_CBS_142171, [28] 29 Saccharata_petrophilicola_CPC_29230, [29] 30 Saccharata_petrophilicola_CPC_29264, [30] 31 Saccharata_proteae_CBS_115206, [31] 32 Saccharata_proteae_CBS_115384, [32] 33 Saccharata_proteae_CBS_115490, [33] 34 Saccharata_proteae_CBS_115498, [34] 35 Saccharata_proteae_CBS_116174, [35] 36 Saccharata_proteae_CBS_119218, [36] 37 Saccharata_proteae_CBS_121406, [37] 38 Saccharata_proteae_CBS_121410, [38] 39 Saccharata_proteae_CBS_121422; TREE 'Fig. S10C (bootstrap support values overlayed). First of twenty equally most parsimonious trees of the Saccharata tef1 alignment.' = (((((((((8:44,(15:1,(16:1,17:0.0):1):15):17,4:7):7,(6:12,(25:8,(10:2,(9:0.0,11:0.0):1):1):3):3):4,7:7):3,(27:0.0,28:0.0):3):8,(29:0.0,30:2):20):4,((((5:6,26:4):3,(((((20:0.0,21:0.0):4,22:0.0):5,37:0.0,38:2,39:1,31:5,35:0.0):2,36:0.0,32:0.0,34:0.0):3,33:4):4):1,23:5):2,24:5):15):13,((18:14,((12:0.0,13:0.0,14:0.0):4,(2:3,3:8):2):2):4,19:9):19):19,1:52):0.0; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 302; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 302; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 302; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1606915259732; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7948692017960083339; tell It; setDefaultOrder 38 6 7 14 22 13 15 0 20 19 21 2 3 4 10 11 12 1 5 26 27 28 24 25 18 23 16 17 8 9 36 33 29 34 37 30 31 32 35; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7303786043778343985; mqVersion 361; checksumv 0 3 4200754068 null getNumChars 302 numChars 302 getNumTaxa 39 numTaxa 39 short true bits 15 states 15 sumSquaresStatesOnly 218681.0 sumSquares 218681.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 259; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1752 1183; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7303786043778343985 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 639; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1493 1111; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;