#NEXUS [written Tue Dec 01 12:59:23 CET 2020 by Mesquite version 3.61 (build 927) at 2017-15-inch-MacBook-Pro.local/192.168.2.86] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=50; TAXLABELS Botryosphaeria_agaves_CBS_133992 Botryosphaeria_agaves_CBS_141505 Botryosphaeria_agaves_MFLUCC_10_0051 Botryosphaeria_corticis_ATCC_22927 Botryosphaeria_corticis_CBS_119047 Botryosphaeria_corticis_CBS_119048 Botryosphaeria_dothidea_CBS_110302 Botryosphaeria_dothidea_CBS_110484 Botryosphaeria_dothidea_CBS_115476 Botryosphaeria_dothidea_CBS_121557 Botryosphaeria_dothidea_CBS_123530 Botryosphaeria_dothidea_CERC_1976 Botryosphaeria_dothidea_CMW_25215 Botryosphaeria_dothidea_CMW_7999 Botryosphaeria_dothidea_CPC_29048 Botryosphaeria_dothidea_DAR_78224 Botryosphaeria_dothidea_MUCC_500 Botryosphaeria_dothidea_MUCC_501 Botryosphaeria_dothidea_MUCC_503 Botryosphaeria_dothidea_PD_296 Botryosphaeria_dothidea_was_auasmontanum_CBS_121769 Botryosphaeria_dothidea_was_minutispermatia_GZCC_16_0013 Botryosphaeria_dothidea_was_minutispermatia_GZCC_16_0014 Botryosphaeria_dothidea_was_sinensis_CGMCC_3_17723 Botryosphaeria_dothidea_was_sinensis_CGMCC_3_17724 Botryosphaeria_dothidea_was_wangensis_CERC_2298 Botryosphaeria_dothidea_was_wangensis_CERC_2299 Botryosphaeria_fabicerciana_CBS_127193 Botryosphaeria_fabicerciana_CBS_127194 Botryosphaeria_fabicerciana_was_fusispora_CBS_118831 Botryosphaeria_fabicerciana_was_fusispora_CERC_2006 Botryosphaeria_fabicerciana_was_fusispora_CERC_2930 Botryosphaeria_fabicerciana_was_fusispora_CERC_2949 Botryosphaeria_fabicerciana_was_fusispora_CERC_3441 Botryosphaeria_fabicerciana_was_fusispora_CERC_3469 Botryosphaeria_fabicerciana_was_fusispora_CPC_29629 Botryosphaeria_fabicerciana_was_fusispora_MFLUCC_10_0098 Botryosphaeria_fabicerciana_was_fusispora_MFLUCC_11_0507 Botryosphaeria_kuwatsukai_CBS_135219 Botryosphaeria_kuwatsukai_LSP_5 Botryosphaeria_kuwatsukai_was_rosaceae_CGMCC_3_18007 Botryosphaeria_kuwatsukai_was_rosaceae_CGMCC_3_18008 Botryosphaeria_qingyuanensis_CERC_2946 Botryosphaeria_qingyuanensis_CERC_2947 Botryosphaeria_ramosa_CBS_122069 Botryosphaeria_ramosa_was_pseudoramosa_CERC_1999 Botryosphaeria_ramosa_was_pseudoramosa_CERC_2001 Botryosphaeria_scharifii_CBS_124702 Botryosphaeria_scharifii_CBS_124703 Cophinforma_eucalypti_CBS_134651 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=263; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Botryosphaeria_agaves_CBS_133992 TAAGCACACTTTT--TCCGTGCCTGCAC--GTGCTGGATTCCCGCGCCGAATTTGCCTTAGAA------CTCGGGTGAGGGGCAATTTCTT-GGTGGGGTTGGCCCGCGCTAGGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGT---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACGCCCCTCACCAACGCTTCCAGCCACCCACGTTCGTCAATTCGATCATATGCTAACCACTACCGTT????????? Botryosphaeria_agaves_CBS_141505 TAAGCACACTTTT--TCCGTGCCTGCAC--GTGCTGGATTCCCGCGCCGAATTTGCCTTAGAA------CTCGGGTGAGGGGCAATTTCTT-GGTGGGGTTGGCCCGCGCTAGGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGT---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACGCCCCTCACCAACGCTTCCAGCCACCCACGTTCGTCAATTCGATCATATGCTAACCACTACCGTTACAATAGGA Botryosphaeria_agaves_MFLUCC_10_0051 TAAGCACACTTTT--TCCGTGCCTGCAC--GTGCTGGATTCCCGCGCCGAATTTGCCTTAGAA------CTCGGGTGAGGGGCAATTTCTT-GGTGGGGTTGGCCCGCGCTAGGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGT---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACGCCCCTCACCAACGCTTCCAGCCACCCACGTTCGTCAATTCGATCATATGCTAACCACTACCGTTACAATAGGA Botryosphaeria_corticis_ATCC_22927 TAAGCACACTTTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACTCACTCTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTGCCAGCCACTCACGTCCGTCTGTGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_corticis_CBS_119047 TAAGCACACTTTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACTCACTCTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTGCCAGCCACTCACGTCCGTCTGTGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_corticis_CBS_119048 TAAGCACACTTTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACTCACTCTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTGCCAGCCACTCACGTCCGTCTGTGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_dothidea_CBS_110302 TAAGCACACATTT--TCTGTGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCA------CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_dothidea_CBS_110484 TAAGCACACATTT--TCTGTGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCA------CTCTGGTGAGGGGCAATTTCTTGGGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_dothidea_CBS_115476 TAAGCACACATTT--TCTGTGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCA------CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_dothidea_CBS_121557 TAAGCACACATTT--TCTGTGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCA------CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_dothidea_CBS_123530 TAAGCACACATTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_dothidea_CERC_1976 TAAGCACACATTT--TCTGTGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCA------CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_dothidea_CMW_25215 TAAGCACACATTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_dothidea_CMW_7999 TAAGCACACATTT--TCTGTGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCA------CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_dothidea_CPC_29048 TAAGCACACATTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTTTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCACATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCC---ACAGGA Botryosphaeria_dothidea_DAR_78224 TAAGCACACATTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTTTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCACATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_dothidea_MUCC_500 TAAGCACACATTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTTTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCACATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_dothidea_MUCC_501 TAAGCACACATTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTTTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCACATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_dothidea_MUCC_503 TAAGCACACATTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTTTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCACATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_dothidea_PD_296 TAAGCACACATTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTTTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCACATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_dothidea_was_auasmontanum_CBS_121769 TAAGCACACATTT--TCTGTGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCA------CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAA---------------------------TGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_dothidea_was_minutispermatia_GZCC_16_0013 TAAGCACACATTT--TCTGTGCCTGCACGTGTGCTGGGTT-CTGCGCCGAATTTGCCTTATCA------CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTSTTCKGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACKCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCCACAACGGGA Botryosphaeria_dothidea_was_minutispermatia_GZCC_16_0014 TAAGCACACATTT--TCTGTGCCTGCACGTGTGCTGGGTT-CTGCGCCGAATTTGCCTTATCA------CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTSTTCKGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACKCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCCACAACGGGA Botryosphaeria_dothidea_was_sinensis_CGMCC_3_17723 TAAGCACACATTT--TCTGTGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCA------CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_dothidea_was_sinensis_CGMCC_3_17724 TAAGCACACATTT--TCTGTGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCA------CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_dothidea_was_wangensis_CERC_2298 TAAGCACACATTT--TCTGTGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_dothidea_was_wangensis_CERC_2299 TAAGCACACATTT--TCTGTGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_fabicerciana_CBS_127193 TAAGCACGCTTTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAATGCTTCCAGCCACTCACGTCCGTCTGTGCGACCATATGCTAACC---GCCGCCACAACAGGA Botryosphaeria_fabicerciana_CBS_127194 TAAGCACGCTTTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAATGCTTCCAGCCACTCACGTCCGTCTGTGCGACCATATGCTAACC---GCCGCCACAACAGGA Botryosphaeria_fabicerciana_was_fusispora_CBS_118831 TAAGCACGCTTTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAATGCTTCCAGCCACTCACGTCCGTCTGTGCGACCATATGCTAACC---GCCGCCACAACAGGA Botryosphaeria_fabicerciana_was_fusispora_CERC_2006 TAAGCACGCTTTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAATGCTTCCAGCCACTCACGTCCGTCTGTGCGACCATATGCTAACC---GCCGCCACAACAGGA Botryosphaeria_fabicerciana_was_fusispora_CERC_2930 TAAGCACGCTTTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCGGAACACCCCTCACCAATGCTTCCAGCCACTCACGTCCGTCTGTGCGACCATATGCTAACC---GCCGCCACAACAGGA Botryosphaeria_fabicerciana_was_fusispora_CERC_2949 TAAGCACGCTTTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAATGCTTCCAGCCACTCACGTCCGTCTGTGCGACCATATGCTAACC---GCCGCCACAACAGGA Botryosphaeria_fabicerciana_was_fusispora_CERC_3441 TAAGCACGCTTTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTAACCGGCGTGCGACCGACGCG-AACACCCCTCACCAATGCTTCCAGCCACTCACGTCCGTCTGTGCGACCATATGCTAACC---GCCGCCACAACAGGA Botryosphaeria_fabicerciana_was_fusispora_CERC_3469 TAAGCACGCTTTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTAACCGGCGTGCGACCGACGCG-AACACCCCTCACCAATGCTTCCAGCCACTCACGTCCGTCTGTGCGACCATATGCTAACC---GCCGCCACAACAGGA Botryosphaeria_fabicerciana_was_fusispora_CPC_29629 TAAGCACGCTTTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAATGCTTCCAGCCACTCACGTCCGTCTGTGCGACCATATGCTAACC---GCCGCCACAACAGGA Botryosphaeria_fabicerciana_was_fusispora_MFLUCC_10_0098 TAAGCACGCTTTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCCCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA----TTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAATGCTTCCAGCCACTCACGTCCGTCTGTGCGACCATATGCTAACC---GCCGCCACAACAGGA Botryosphaeria_fabicerciana_was_fusispora_MFLUCC_11_0507 TAAGCACGCTTTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCCCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA----TTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAATGCTTCCAGCCACTCACGTCCGTCTGTGCGACCATATGCTAACC---GCCGCCACAACAGGA Botryosphaeria_kuwatsukai_CBS_135219 ????????????????????????????????????GGTTCCTGCGCCGAATTTGCCTTATCCCT----CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTCCGTCTGTGCGACCATATGCTAACC---ACCGCCACA?????? Botryosphaeria_kuwatsukai_LSP_5 ????????????????????????????????????GGTTCCTGCGCCGAATTTGCCTTATCCCT----CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTCCGTCTGTGCGACCATATGCTAACC---ACCGCCACA?????? Botryosphaeria_kuwatsukai_was_rosaceae_CGMCC_3_18007 TAAGCACACTTTT--TCTTCGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCCCT----CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTCCGTCTGTGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_kuwatsukai_was_rosaceae_CGMCC_3_18008 TAAGCACACTTTT--TCTTCGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCCCT----CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTCCGTCTGTGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_qingyuanensis_CERC_2946 TAAGCACGCTTTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_qingyuanensis_CERC_2947 TAAGCACGCTTTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCACT----CTCTGGTGAGGGGCAATTTCTT-GGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA---TTTTTT---GTGACCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACC---ACCGCCACAACAGGA Botryosphaeria_ramosa_CBS_122069 TAAGCACACTTTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCA------CTCTGGTGAGGGGCAATTTCTT-GGTGGGGTTGGCCCGCGCTAAGCCTCGTTTGGCCTTCGGCAAAATCTCCGCATCTGGA---TTTTTTTTGGAGGCCGGCGTGCGACCGACGCG-AACACCCCTCACCAACGCATCCAACCACTCACGTTCGCCGATGCGACCATACGCTAACC---ACCGCCACAACAGGA Botryosphaeria_ramosa_was_pseudoramosa_CERC_1999 TAAGCACACTTTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCA------CTCTGGTGAGGGGCAATTTCTT-GGTGGGGTTGGCCCGCGCTAAGCCTCGTTTGGCCTTCGGCAAAATCTCCGCATCTGGA---TTTTTTTTGGAGGCCGGCGTGTGACCGACGCG-AACACCCCTCACCAACGCATCCAACCACTCACGTTCGCCGATGCGACCATACGCTAACC---ACCGCCACAACAGGA Botryosphaeria_ramosa_was_pseudoramosa_CERC_2001 TAAGCACACTTTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCA------CTCTGGTGAGGGGCAATTTCTT-GGTGGGGTTGGCCCGCGCTAAGCCTCGTTTGGCCTTCGGCAAAATCTCCGCATCTGGA---TTTTTTTTGGAGGCCGGCGTGTGACCGACGCG-AACACCCCTCACCAACGCATCCAACCACTCACGTTCGCCGATGCGACCATACGCTAACC---ACCGCCACAACAGGA Botryosphaeria_scharifii_CBS_124702 TAAGCACACTTTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCA------CTCTGGTGAGGGGCAATTTCTT-GGTGGGGTTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGATTTTTTTTTTTGGAGGCCGGCGTGCGACCGACGCG-AATACCCCTCACCAACGCTTCCAACCACTCACGTTCGCCTATGCGACCATACGCTAACC---ACCGCCACAACAGGA Botryosphaeria_scharifii_CBS_124703 TAAGCACACTTTT--TCTATGCCTGCACGTGTGCTGGGTTCCTGCGCCGAATTTGCCTTATCA------CTCTGGTGAGGGGCAATTTCTT-GGTGGGGTTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGA-TTTTTTTTTTGGAGGCCGGCGTGCGACCGACGCG-AATACCCCTCACCAACGCTTCCAACCACTCACGTTCGCCTATGCGACCATACGCTAACC---ACCGCCACAACAGGA Cophinforma_eucalypti_CBS_134651 TAAGCACCCTTTCCGCCTCTCCCTGCACGAGTGCTAGGTCCCGTGCCCGAATTTGCCTTATCA------CTC-GATGAGGGGCATTTTCGT-GGTGGGGTTGGCCCGCCCTAGGCCGCGTTTGGTTCTCGGCAAAATGTCCGCTTGTGGA---TTTTTT---GCGACCGGCGTGCGACCGAAACG-CGCGCCCTCCGC-------TCCAGCCACTCACGTCCGTCCGTGCGACCAGCTGCTAACC---CTCGCCTCAA????? ; END; BEGIN mrbayes; outgroup Cophinforma_eucalypti_CBS_134651_T; charset locus1 = 1 -263; partition AllLoci = 1 : locus1; log start filename = BotryosphaeriaTEFMB.log; END; BEGIN mrbayes; set partition = AllLoci; prset applyto = ( 1 ) statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); Lset applyto = ( 1 ) nst = 6 rates = gamma; unlink shape = ( all ) pinvar = ( all ) statefreq = ( all ) revmat = ( all ); mcmcp ngen = 1000000000 nchains = 4 printfreq = 10 temp = 0.2 samplefreq = 10 savebrlens = yes stoprule = yes stopval = 0.01 Relburnin = yes BurninFrac = 0.25 filename = BotryosphaeriaTEFMB; mcmc; sump; sumt; END; BEGIN TREES; Title 'Trees from "S1B_BotryosphaeriaTEFMB.nexus"'; ID 01761de798f925; LINK Taxa = Taxa; TRANSLATE [0] 1 Botryosphaeria_agaves_CBS_133992, [1] 2 Botryosphaeria_agaves_CBS_141505, [2] 3 Botryosphaeria_agaves_MFLUCC_10_0051, [3] 4 Botryosphaeria_corticis_ATCC_22927, [4] 5 Botryosphaeria_corticis_CBS_119047, [5] 6 Botryosphaeria_corticis_CBS_119048, [6] 7 Botryosphaeria_dothidea_CBS_110302, [7] 8 Botryosphaeria_dothidea_CBS_110484, [8] 9 Botryosphaeria_dothidea_CBS_115476, [9] 10 Botryosphaeria_dothidea_CBS_121557, [10] 11 Botryosphaeria_dothidea_CBS_123530, [11] 12 Botryosphaeria_dothidea_CERC_1976, [12] 13 Botryosphaeria_dothidea_CMW_25215, [13] 14 Botryosphaeria_dothidea_CMW_7999, [14] 15 Botryosphaeria_dothidea_CPC_29048, [15] 16 Botryosphaeria_dothidea_DAR_78224, [16] 17 Botryosphaeria_dothidea_MUCC_500, [17] 18 Botryosphaeria_dothidea_MUCC_501, [18] 19 Botryosphaeria_dothidea_MUCC_503, [19] 20 Botryosphaeria_dothidea_PD_296, [20] 21 Botryosphaeria_dothidea_was_auasmontanum_CBS_121769, [21] 22 Botryosphaeria_dothidea_was_minutispermatia_GZCC_16_0013, [22] 23 Botryosphaeria_dothidea_was_minutispermatia_GZCC_16_0014, [23] 24 Botryosphaeria_dothidea_was_sinensis_CGMCC_3_17723, [24] 25 Botryosphaeria_dothidea_was_sinensis_CGMCC_3_17724, [25] 26 Botryosphaeria_dothidea_was_wangensis_CERC_2298, [26] 27 Botryosphaeria_dothidea_was_wangensis_CERC_2299, [27] 28 Botryosphaeria_fabicerciana_CBS_127193, [28] 29 Botryosphaeria_fabicerciana_CBS_127194, [29] 30 Botryosphaeria_fabicerciana_was_fusispora_CBS_118831, [30] 31 Botryosphaeria_fabicerciana_was_fusispora_CERC_2006, [31] 32 Botryosphaeria_fabicerciana_was_fusispora_CERC_2930, [32] 33 Botryosphaeria_fabicerciana_was_fusispora_CERC_2949, [33] 34 Botryosphaeria_fabicerciana_was_fusispora_CERC_3441, [34] 35 Botryosphaeria_fabicerciana_was_fusispora_CERC_3469, [35] 36 Botryosphaeria_fabicerciana_was_fusispora_CPC_29629, [36] 37 Botryosphaeria_fabicerciana_was_fusispora_MFLUCC_10_0098, [37] 38 Botryosphaeria_fabicerciana_was_fusispora_MFLUCC_11_0507, [38] 39 Botryosphaeria_kuwatsukai_CBS_135219, [39] 40 Botryosphaeria_kuwatsukai_LSP_5, [40] 41 Botryosphaeria_kuwatsukai_was_rosaceae_CGMCC_3_18007, [41] 42 Botryosphaeria_kuwatsukai_was_rosaceae_CGMCC_3_18008, [42] 43 Botryosphaeria_qingyuanensis_CERC_2946, [43] 44 Botryosphaeria_qingyuanensis_CERC_2947, [44] 45 Botryosphaeria_ramosa_CBS_122069, [45] 46 Botryosphaeria_ramosa_was_pseudoramosa_CERC_1999, [46] 47 Botryosphaeria_ramosa_was_pseudoramosa_CERC_2001, [47] 48 Botryosphaeria_scharifii_CBS_124702, [48] 49 Botryosphaeria_scharifii_CBS_124703, [49] 50 Cophinforma_eucalypti_CBS_134651; TREE Fig._S1B._Bayesian_phylogeny_of_the_Botryosphaeria_tef1_alignment. = (50:0.0859896,28:0.001425328,31:0.00135263,32:0.001429116,33:0.001435139,29:0.001430831,30:0.001348035,36:0.001266989,(34:0.00131697,35:0.001254662):0.003444302,(37:0.001527518,38:0.001484717):0.003344176,(((1:0.001300949,2:0.00137975,3:0.001294431):0.03808065,((48:0.001373133,49:0.001342431):0.003133228,(45:0.0013759,(46:0.001415211,47:0.001262978):0.003311343):0.007554519):0.01269299,((16:0.001279959,17:0.001335514,18:0.001373815,19:0.001434355,20:0.001476525,15:0.00140025):0.005449143,11:0.001240365,(7:0.001435757,8:0.001345598,12:0.00139178,14:0.001265883,9:0.001274335,10:0.001381373,21:0.001331964,26:0.001414032,27:0.001316822,24:0.001378521,25:0.001305146,(22:0.001418048,23:0.0014314):0.003222366):0.003314791,13:0.001404521):0.003337067,(43:0.001353392,44:0.001473667):0.003081946):0.005159443,(4:0.001398577,5:0.001361487,6:0.00134025):0.003294838,(39:0.0014743,41:0.001411679,42:0.001361116,40:0.001425612):0.006429728):0.006508133); END; BEGIN TREES; Title 'Trees from "S1B_BotryosphaeriaTEFMB.nexus"'; ID 01761de798fe26; LINK Taxa = Taxa; TRANSLATE [0] 1 Botryosphaeria_agaves_CBS_133992, [1] 2 Botryosphaeria_agaves_CBS_141505, [2] 3 Botryosphaeria_agaves_MFLUCC_10_0051, [3] 4 Botryosphaeria_corticis_ATCC_22927, [4] 5 Botryosphaeria_corticis_CBS_119047, [5] 6 Botryosphaeria_corticis_CBS_119048, [6] 7 Botryosphaeria_dothidea_CBS_110302, [7] 8 Botryosphaeria_dothidea_CBS_110484, [8] 9 Botryosphaeria_dothidea_CBS_115476, [9] 10 Botryosphaeria_dothidea_CBS_121557, [10] 11 Botryosphaeria_dothidea_CBS_123530, [11] 12 Botryosphaeria_dothidea_CERC_1976, [12] 13 Botryosphaeria_dothidea_CMW_25215, [13] 14 Botryosphaeria_dothidea_CMW_7999, [14] 15 Botryosphaeria_dothidea_CPC_29048, [15] 16 Botryosphaeria_dothidea_DAR_78224, [16] 17 Botryosphaeria_dothidea_MUCC_500, [17] 18 Botryosphaeria_dothidea_MUCC_501, [18] 19 Botryosphaeria_dothidea_MUCC_503, [19] 20 Botryosphaeria_dothidea_PD_296, [20] 21 Botryosphaeria_dothidea_was_auasmontanum_CBS_121769, [21] 22 Botryosphaeria_dothidea_was_minutispermatia_GZCC_16_0013, [22] 23 Botryosphaeria_dothidea_was_minutispermatia_GZCC_16_0014, [23] 24 Botryosphaeria_dothidea_was_sinensis_CGMCC_3_17723, [24] 25 Botryosphaeria_dothidea_was_sinensis_CGMCC_3_17724, [25] 26 Botryosphaeria_dothidea_was_wangensis_CERC_2298, [26] 27 Botryosphaeria_dothidea_was_wangensis_CERC_2299, [27] 28 Botryosphaeria_fabicerciana_CBS_127193, [28] 29 Botryosphaeria_fabicerciana_CBS_127194, [29] 30 Botryosphaeria_fabicerciana_was_fusispora_CBS_118831, [30] 31 Botryosphaeria_fabicerciana_was_fusispora_CERC_2006, [31] 32 Botryosphaeria_fabicerciana_was_fusispora_CERC_2930, [32] 33 Botryosphaeria_fabicerciana_was_fusispora_CERC_2949, [33] 34 Botryosphaeria_fabicerciana_was_fusispora_CERC_3441, [34] 35 Botryosphaeria_fabicerciana_was_fusispora_CERC_3469, [35] 36 Botryosphaeria_fabicerciana_was_fusispora_CPC_29629, [36] 37 Botryosphaeria_fabicerciana_was_fusispora_MFLUCC_10_0098, [37] 38 Botryosphaeria_fabicerciana_was_fusispora_MFLUCC_11_0507, [38] 39 Botryosphaeria_kuwatsukai_CBS_135219, [39] 40 Botryosphaeria_kuwatsukai_LSP_5, [40] 41 Botryosphaeria_kuwatsukai_was_rosaceae_CGMCC_3_18007, [41] 42 Botryosphaeria_kuwatsukai_was_rosaceae_CGMCC_3_18008, [42] 43 Botryosphaeria_qingyuanensis_CERC_2946, [43] 44 Botryosphaeria_qingyuanensis_CERC_2947, [44] 45 Botryosphaeria_ramosa_CBS_122069, [45] 46 Botryosphaeria_ramosa_was_pseudoramosa_CERC_1999, [46] 47 Botryosphaeria_ramosa_was_pseudoramosa_CERC_2001, [47] 48 Botryosphaeria_scharifii_CBS_124702, [48] 49 Botryosphaeria_scharifii_CBS_124703, [49] 50 Cophinforma_eucalypti_CBS_134651; TREE 'Fig. S1B (bootstrap support values overlayed). First of 36 equally most parsimonious trees of the Botryosphaeria tef1 alignment.' = (((1:0.0,2:0.0,3:0.0):16,(((48:1,49:0.0):3,(45:0.0,(46:0.0,47:0.0):1):3):9,((((16:0.0,17:0.0,18:0.0,19:0.0,20:0.0,15:3):2,11:0.0,(43:0.0,44:0.0,(((4:0.0,5:0.0,6:0.0):5,(39:0.0,41:0.0,42:0.0,40:0.0):3):1,(28:0.0,31:0.0,32:1,33:0.0,(34:0.0,35:0.0):1,29:0.0,30:0.0,36:0.0,(37:0.0,38:0.0):2):2):2):2,13:0.0):1,26:0.0,27:0.0):2,7:0.0,8:1,12:0.0,14:0.0,9:0.0,10:0.0,21:21,24:0.0,25:0.0,(22:0.0,23:0.0):2):2):5):21,50:27):0.0; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 263; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 263; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 263; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1606823963260; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6267730895674983567; tell It; setDefaultOrder 0 1 2 30 31 32 15 16 19 20 14 17 43 18 13 8 9 10 11 12 21 26 27 24 25 22 23 37 44 45 38 39 40 41 42 46 47 48 33 36 34 35 28 29 5 6 7 3 4 49; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3840107302118924613; mqVersion 361; checksumv 0 3 2543879077 null getNumChars 263 numChars 263 getNumTaxa 50 numTaxa 50 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 265552.0 sumSquares -1.84467440737094E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 259; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1323 1164; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3840107302118924613 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 396; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1064 1092; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;