#NEXUS [written Wed Dec 02 13:55:05 CET 2020 by Mesquite version 3.61 (build 927) at 2017-15-inch-MacBook-Pro.local/192.168.2.86] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=45; TAXLABELS Alanphillipsia_aloeicola_CBS_138896 Alanphillipsia_aloetica_CBS_136409 Alanphillipsia_euphorbiae_CBS_136411 Barriopsis_iraniana_CBS_124698 Barriopsis_iraniana_CBS_124699 Barriopsis_stevensiana_CBS_174.26 Barriopsis_tectonae_CBS_137786 Barriopsis_thailandica_MFLUCC_14_1190 Lasiodiplodia_theobromae_CBS_164.96 Oblongocollomyces_variabilis_CBS_121774 Oblongocollomyces_variabilis_CBS_121775 Oblongocollomyces_variabilis_CBS_121776 Phaeobotryon_aplospora_CFCC_53773 Phaeobotryon_aplospora_CFCC_53774 Phaeobotryon_aplospora_CFCC_53776 Phaeobotryon_cupressi_CBS_124700 Phaeobotryon_cupressi_CBS_124701 Phaeobotryon_mamane_CBS_122980 Phaeobotryon_mamane_CPC_12442 Phaeobotryon_negundinis_CAA_797 Phaeobotryon_negundinis_CAA_798 Phaeobotryon_negundinis_CAA_799 Phaeobotryon_negundinis_CPC_33384 Phaeobotryon_negundinis_CPC_33388 Phaeobotryon_negundinis_CPC_34752 Phaeobotryon_negundinis_MFLUCC_15_0436 Phaeobotryon_rhoinum_CFCC_52449 Phaeobotryon_rhoinum_CFCC_52450 Phaeobotryon_rhois_CFCC_89662 Phaeobotryon_rhois_CFCC_89663 Phaeobotryon_ulmi_CBS_114123 Phaeobotryon_ulmi_CBS_123.30 Phaeobotryon_ulmi_CBS_138854 Phaeobotryon_ulmi_CBS_174.63 Sphaeropsis_citrigena_ICMP_16812 Sphaeropsis_citrigena_ICMP_16818 Sphaeropsis_eucalypticola_CBS_133993 Sphaeropsis_eucalypticola_MFLUCC_11_0654 Sphaeropsis_porosa_CBS_110496 Sphaeropsis_porosa_CBS_110574 Sphaeropsis_visci_CBS_100163 Sphaeropsis_visci_CBS_122527 Sphaeropsis_visci_CBS_186.97 Sphaeropsis_visci_CPC_33386 Sphaeropsis_visci_CPC_35525 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=339; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Alanphillipsia_aloeicola_CBS_138896 AGAAGGTAAGGCGAC----------TCTC---------------CCCGCTCCTGCAATGTTGCACTTGTGCGGCC----------------TTCCTGCGCCGCAC---GCTGCCTGATCG--CCCGGGTGAGGGGCAATTTT--TCGTGGT-GGGGTGCGGTCCGCGCTAAGCCTCGTTGGTGCATCGGCAAAATGACCGCTTTTGGTC---TTTGTGCG---ATCGGCGCGAGGCCAAC-GCGCG-----CCCCCCT-CACTAGCG---------GGAAATGCCCCGACCACCCAC-TGTCCTTGTGTGACCCGAGGCTAATGCGCACCACTACAGGA Alanphillipsia_aloetica_CBS_136409 AGAAGGTAAGGCGAC----------TCTC---------------CCCGCTCCTGCACTGTTGCACTGGTGCGGCC----------------TTCCTGCGCCGCAC---GCTGCCTGATCG--CCCGGGTGAGGGGCAATTTT--TCGTGGT-GGGGTGCGGTCCGCGCTAAGCCTCGTTGGTGCATCGGCAAAATGACCGCTTTTGGTC---TTTGTGCG---ATCGGCGCCAGGCCAGC-GCGCG-----CCCCCCT-CACTAGCG---------AGAAATGCTCCGACCACCCAC-TGTCCTTGTGTGACCCGAGGCTAATGCGCACCACTACAGGA Alanphillipsia_euphorbiae_CBS_136411 AGAAGGTAAGGCGAC----------TCGT---------------CCCGCTCC--------TGCACCGCTGCAGCG---------------CTTGCTGCGCGGCCCATCACCGCCCGATCGCCCCCAGGTGAGGGGCAATTTTTCTCGTGGTGGGGGTGCGTCCCGCGCTAAGCCTCGTTTGTGCGTCGGCAAAAACACCGCTTTTGGTT-TTTTTGTGCGATCACCGGCGCCAGGCCCGC-GTGCA--CG-CCCACCGCTAGCAGCG---------AAACATGCCCCGCCCACCCGC-------TGTGCGACCCGAGGCTAATGCACGCCACCATAGGA Barriopsis_iraniana_CBS_124698 AGAAGGTAAGGCGAC----------TTTC---------------CCCGCTCC--------TGGGCTTGCGTTGCA----------------TTCCCACGCATGC----GCTGCCTCGTCG--CCCAGATGAGGGGCAATTTT--TCGTGGT-GGGGTGCGGCCCGCGCTAAGCCTCGTTCGTGCGTCGGTAAAATGGCCGCATTGGGCG----TTTTGCG---ACCGGTCCGAAGCCAGC-GCTCG-------CCC-----CTCGCG----------AAAAAGCCCCGACCACCCAC-TGGGTTTGTGCAACCAGAGACTAATGCGTGCCACTACAGGA Barriopsis_iraniana_CBS_124699 AGAAGGTAAGGCGAC----------TTTC---------------CCCGCTCC--------TGGGCTTGCGTTGCA----------------TTCCCACGCATGC----GCTGCCTCGTCG--CCCAGATGAGGGGCAATTTT--TCGTGGT-GGGGTGCGGCCCGCGCTAAGCCTCGTTCGTGCGTCGGTAAAATGGCCGCATTGGGCG----TTTTGCG---ACCGGTCCGAAGCCAGC-GCTCG-------CCCCT-CACTCGCG----------AAAAAGCCCCGACCACCCAC-TGGGTTTGTGCAACCAGAGACTAATGCGTGCCACTACAGGA Barriopsis_stevensiana_CBS_174.26 AGAAGGTAAGGCGAC----------TTTC---------------CCCGCTCC--------TGCACTCGCGTTGCG----------------TCGCTGCCCGCAC-------GCTCGCACG--ACCCGGTGAGGGGCAATTTT--TCGTGGT-GGGGTGCGGCCCGCGCTAAGCCTCGTT--TGCGTCGGCAAAATGGCTGCATTGGGCC----TTTTGCG---ACCGGCGTCGGACCAGC-GCGCG-------CCCCA-CGCTAGCG-----------AAACGCCCCGACCACCATC-GCAGCTTGTGCGACCAGAGGCTAATGCGTGCCACTACAGGA Barriopsis_tectonae_CBS_137786 AGAAGGTAAGGCGCG-CTCCCGCTCCCGCTCCCCGCATCCTGCACCTGCACCTGCACC--TGCACCTGCGCTGCGTCGCTGCCCGCTGCCCGCTGCCCGCACGCCC-GCACGCTCGCACG--ACCCGGTGAGGGGCAATTT---TCGTGGT-GGGGTGCGGCGCGCGCTAGGCCTCGTTTGTGCGTCGGCAAAATGGCCGCATTGGGCC---TTTTTGCG---ACCGGCGCCAGGTCAGC-GCGCG-------CCCCT-CGCTAGCG---------AAACACGCCCCGACCACCCTC-GCAGCTTGTGCGACCAGCGGCTAACGCGTGCCACTACAGGA Barriopsis_thailandica_MFLUCC_14_1190 ???????????????????????????????????????????????????????????????GCTTGCGTTGCG----------------TT-CCACGCATGC----GCTGCCTCGTCG--CCCAGATGAGGGGCAATTTT--TCGTGGT-GGGGTGCGGCCCGCGCTAAGCCTCGTTCGTGCGTCGGTAAAATGGCCGCATTGGGCG----TTTTGCG---ACCGGTCCGAAGCCAGC-GCTCG-------CCCCT-CACTCGCG----------AAAAAGCCCCGACCACCCAC-TGGGTTTGTGCAACCAGAGACTAATGCGTGCCACTACAGGA Lasiodiplodia_theobromae_CBS_164.96 AGAAGGTCCGTGCACGCATGTCGTTTTTTA------------ACCCCTCTCG------ACTTCGGCGCTGCAGCG----------------CTGCGGCGCACAG----TCCGCCTTATCG--CTCTGGTGAGGGGCATTTT---TCGTGGT-GGGGTTTGGCCCGCGCTA-GCCTCGTCTGGGT-TCGGCAAAATGACCGCACTTGGTT---TTTTTGCG---ACCGGCGTCTGGCCGAC-GCGC------CTCCC---CACTAGCG---------AAAAATGCTCTGACCACTCATGTACCGTCGTACGAGCAAAGGCTAACGCGCCCCACTACAGGA Oblongocollomyces_variabilis_CBS_121774 AGAAGGTAAGGCGAC----------TTTC---------------CCCGCTCC--------TGCATCGGTGCAGCA----------------TTGCTGCCCGGCGC---TTTATCCCATCA--CTCAGGTGAGGGGCAATTTT--TCATGGT-GGGGTGCGGCCCGCGCTAAACCTTGTTTGTCGGTCGGCAAAATCACCGCTTTGGGGT---TTTGTGCG---ATCGGCGCAAGGCCAAC-GCGCG----CCCCCCCTCCACTAGCG---------AAAAATGCCCCGACCACTCAG-TGCTCTCGTGTGACCAGAGGCTAATGCGCGCCACCACAGGA Oblongocollomyces_variabilis_CBS_121775 AGAAGGTAAGGCGAC----------TTTC---------------CCCGCTCC--------TGCATCGGTGCAGCA----------------TTGCTGCCCGGCGC---CCTATCCCATCA--CCCAGGTGAGGGGCAATTTT--TCATGGT-GGGGTGCGGCCCGCGCTAAACCTTGTTTGTCGGTCGGCAAAATCACCGCTTTGGGGT---TTTGTGCG---ATCGGCGCGAGGCCAAC-GCGCG-----CCCCCCTCCACTAGCG---------AAAAATGCCCCGACCACTCAG-TGCTCTCGTGTGACCAGAGGCTAATGCGCGCCACCACAGGA Oblongocollomyces_variabilis_CBS_121776 AGAAGGTAAGGCGAC----------TTTC---------------CCCGCTCC--------TGCATCGGTGCAGCA----------------TTGCTGCCCGGCGC---CCTATCCCATCA--CCCAGGTGAGGGGCAATTTT--TCATGGT-GGGGTGCGGCCCGCGCTAAACCTTGTTTGTCGGTCGGCAAAATCACCGCTTTGGGGT---TTTGTGCG---ATCGGCGCGAGGCCAAC-GCGCG-----CCCCCCTCCACTAGCG---------AAAAATGCCCCGACCACTCAG-TGCTCTCGTGTGACCAGAGGCTAATGCGCGCCACCACAGGA Phaeobotryon_aplospora_CFCC_53773 AGAAGGTAAGGCATC----------TTTC---------------CCTGCTCC--------TGCACGGGTGCAGCG----------------TTCCCGCTCGCACT---TCTGCCTTATCG--CGCCGGTGAGGG-CATTTTT-CTCGCGGT-GGGGCGCGACGCGCGCTAAGCCTCGTTTGTGCGTCGGTAAACCGGCCACATTCGGTTTTTTTTTTGCG---TCCGGCCTGAGGCCAAT-------GCG--CTCCCT-CACTAGCG-----------AAACGCCCCGACCACTCAA-CGAGTCTGAATGACCAGCTGCTAATGC--GCCGCAACAGGA Phaeobotryon_aplospora_CFCC_53774 AGAAGGTAAGGCATC----------TTTC---------------CCTGCTCC--------TGCACGGGTGCAGCG----------------TTCCCGCTCGCACT---TCTGCCTTATCG--CGCCGGTGAGGG-CATTTTT-CTCGCGGT-GGGGCGCGACGCGCGCTAAGCCTCGTTTGTGCGTCGGTAAACCGGCCACATTCGGTTTTTTTTTTGCG---TCCGGCCTGAGGCCAAT-------GCG--CTCCCT-CACTAGCG-----------AAACGCCCCGACCACTCAA-CGAGTCTGAATGACCAGCTGCTAATGC--GCCGCAACAGGA Phaeobotryon_aplospora_CFCC_53776 AGAAGGTAAGGCATC----------TTTC---------------CCTGCTCC--------TGCACGGGTGCAGCG----------------TTCCCGCTCGCACT---TCTGCCTTATCG--CGCCGGTGAGGG-CATTTTT-CTCGCGGT-GGGGCGCGACGCGCGCTAAGCCTCGTTTGTGCGTCGGTAAACCGGCCACATTCGGTTTTTTTTTTGCG---TCCGGCCTGAGGCCAAT-------GCG--CTCCCT-CACTAGCG-----------AAACGCCCCGACCACTCAA-CGAGTCTGAATGACCAGCTGCTAATGC--GCCGCAACAGGA Phaeobotryon_cupressi_CBS_124700 AGAAGGTAAGGCCTC--------TCTTTC---------------CCCGCTCC--------TGCACGGGTGCAGCG----------------TTCGCGCTCGCACT---TCTGCCTTATCG--CCCCGGTGAGGGGCATTTTT-CTCGTGGT-GGGGTGCGACGCACGCTAAGCCTCGTTTGTGCGTCGGTAAAATGGCCACATTCGGGT-----TTTGCG---TCTGGCCTGAGGCCGAT-GCACG-------CCCCT-CACTAGCG----------AAAATGCCTCGACCACTCAA-CGCGCCTGTGTGACCAGTCTCTAATGC--GCCACCATAGGA Phaeobotryon_cupressi_CBS_124701 AGAAGGTAAGGCCTC--------TCTTTC---------------CCCGCTCC--------TGCACGGGTGCAGCG----------------TTCGCGCTCGCACT---TCTGCCTTATCG--CCCCGGTGAGGGGCATTTTT-CTCGTGGT-GGGGTGCGACGCACGCTAAGCCTCGTTTGTGCGTCGGTAAAATGGCCACATTCGGGT-----TTTGCG---TCTGGCCTGAGGCCGAT-GCACG-------CCCCT-CACTAGCG----------AAAATGCCTCGACCACTCAA-CGCGCCTGTGTGACCAGTCTCTAATGC--GCCACCATAGGA Phaeobotryon_mamane_CBS_122980 AGAAGGTAAGGCTTC----------TTTC---------------CCCGCTCC--------TGCACGGGTGCAGCGTTCCCG--------CTTTCCCGCTCGCCCT---TTTGCCTCGCCG--CCCCGGCGAGGGGCATTTTT-CTCGTGGT-GGGGTGCCACGCGCGCTAGGCCTCGTTTGTGCGTCGGTAAAATGGCCACATTCGGGT-----TTTGCG---GCTGGCCTCAGGCCTAT-GCGCGCGCGCCCCCGCT-CACTAGCG----------AAAACGCCTCGACCACTCAT-CGCGCTTGTGTGACCAGCTGCTAATGC--GCCACAACAGGA Phaeobotryon_mamane_CPC_12442 AGAAGGTAAGGCTTC----------TTTC---------------CCCGCTCC--------TGCACGGGTGCAGCGTTCCCG--------CTTTCCCGCTCGCCCT---TTTGCCTCGCCG--CCCCGGCGAGGGGCATTTTT-CTCGTGGT-GGGGTGCCACGCGCGCTAGGCCTCGTTTGTGCGTCGGTAAAATGGCCACATTCGGGT-----TTTGCG---GCTGGCCTCAGGCCTAT-GCGCGCGCGCCCCCGCT-CACTAGCG----------AAAACGCCTCGACCACTCAT-CGCGCTTGTGTGACCAGCTGCTAATGC--GCCACAACAGGA Phaeobotryon_negundinis_CAA_797 AGAAGGTAAGGCCTC----------TTTC---------------CCCGCTCC--------TGCACGGGTGCAGCG----------------TTCGCGCTCGCACT---CTCGCCTTATCG--CCCCGGTGAGGGGCATTTTT-CCCGTGGT-GGGGTGCGACGCGCGCTAAGCCTCGTTTGTGCGTCGGTAAAATGGCCACATTCGGGT-----TGTGCG----TCGGCCTGAGGCCAAT-GCACG--------CCCT-CACTAGCG----------AAAATGCCCCGACCACTCAA-CGTGCCTGGGTGACCAGCTGCTAATGC--GCCACCACAGGA Phaeobotryon_negundinis_CAA_798 AGAAGGTAAGGCCTC----------TTTC---------------CCCGCTCC--------TGCACGGGTGCAGCG----------------TTCGCGCTCGCACT---CTCGCCTTATCG--CCCCGGTGAGGGGCATTTTT-CCCGTGGT-GGGGTGCGACGCGCGCTAAGCCTCGTTTGTGCGTCGGTAAAATGGCCACATTCGGGT-----TGTGCG----TCGGCCTGAGGCCAAT-GCACG--------CCCT-CACTAGCG----------AAAATGCCCCGACCACTCAA-CGTGCCTGGGTGACCAGCTGCTAATGC--GCCACCACAGGA Phaeobotryon_negundinis_CAA_799 AGAAGGTAAGGCCTC----------TTTC---------------CCCGCTCC--------TGCACGGGTGCAGCG----------------TTCGCGCTCGCACT---CTCGCCTTATCG--CCCCGGTGAGGGGCATTTTT-CCCGTGGT-GGGGTGCGACGCGCGCTAAGCCTCGTTTGTGCGTCGGTAAAATGGCCACATTCGGGT-----TGTGCG----TCGGCCTGAGGCCAAT-GCACG--------CCCT-CACTAGCG----------AAAATGCCCCGACCACTCAA-CGTGCCTGGGTGACCAGCTGCTAATGC--GCCACCACAGGA Phaeobotryon_negundinis_CPC_33384 AGAAGGTAAGGCCTC----------TTTC---------------CCCGCTCC--------TGCACGGGTGCAGCG----------------TTCGCGCTCGCACT---CTCGCCTTATCG--CCCCGGTGAGGGGCATTTTT-CCCGTGGT-GGGGTGCGACGCGCGCTAAGCCTCGTTTGTGCGTCGGTAAAATGGCCACATTCGGGT-----TGTGCG----TCGGCCTGAGGCCAAT-GCACG--------CCCT-CACTAGCG----------AAAATGCCCCGACCACTCAA-CGTGCCTGGGTGACCAGCTGCTAATGC--GCCACCACAGGA Phaeobotryon_negundinis_CPC_33388 AGAAGGTAAGGCCTC----------TTTC---------------CCCGCTCC--------TGCACGGGTGCAGCG----------------TTCGCGCTCGCACT---CTCGCCTTATCG--CCCCGGTGAGGGGCATTTTT-CCCGTGGT-GGGGTGCGACGCGCGCTAAGCCTCGTTTGTGCGTCGGTAAAATGGCCACATTCGGGT-----TGTGCG----TCGGCCTGAGGCCAAT-GCACG--------CCCT-CACTAGCG----------AAAATGCCCCGACCACTCAA-CGTGCCTGGGTGACCAGCTGCTAATGC--GCCACCACAGGA Phaeobotryon_negundinis_CPC_34752 AGAAGGTAAGGCCTC----------TTTC---------------CCCGCTCC--------TGCACGGGTGCAGCG----------------TTCGCGCTCGCACT---CTCGCCTTATCG--CCCCGGTGAGGGGCATTTTT-CCCGTGGT-GGGGTGCGACGCGCGCTAAGCCTCGTTTGTGCGTCGGTAAAATGGCCACATTCGGGT-----TGTGCG----TCGGCCTGAGGCCAAT-GCACG--------CCCT-CACTAGCG----------AAAATGCCCCGACCACTCAA-CGTGCCTGGGTGACCAGCTGCTAATGC--GCCACCACAGGA Phaeobotryon_negundinis_MFLUCC_15_0436 AGAAGGTAAGGCCTC----------TTTC---------------CCCGCTCC--------TGCACGGGTGCAGCG----------------TTCGCGCTCGCACT---CTCGCCTTATCG--CCCCGGTGAGGGGCATTTTT-CCCGTGGT-GGGGTGCGACGCGCGC----CCTCGTTTGTGCGTCGGTAAAATGGCCACATTCGGGT-----TGTGCG----TCGGCCTGAGGCCAAT-GCACG--------CCCT-CACTAGCG----------AAAATGCCCCGACCACTCAA-CGTGCCTGGGTGACCAGCTGCTAATGC--GCCACCACAGGA Phaeobotryon_rhoinum_CFCC_52449 AGAAGGTAAGGCCTC-----------TTC---------------CCCGCTCC--------TGCACGGGTGCAGCG----------------TTCCCGCTCGCACT---TTTGCCTCGCCG--CCCCGGTGAGGGGCATTTTT-CTCGTAGT-GGGGTGCGACGCGCGCTAAGCCTCGTTTGTGCGTCGGTAAAATGGCCACATTCGGGT-----TTCGCG---TCTGGCCTTGGGCCAAT-GCACG-------CCCCT-CACTAGCG----------GAAATGCCTCGACCACTCAG-CGCGCCTGTGTGACCAGCTGCTAACGC--GCCACAACAGGA Phaeobotryon_rhoinum_CFCC_52450 AGAAGGTAAGGCCTC-----------TTC---------------CCCGCTCC--------TGCACGGGTGCAGCG----------------TTCCCGCTCGCACT---TTTGCCTCGCCG--CCCCGGTGAGGGGCATTTTT-CTCGTAGT-GGGGTGCGACGCGCGCTAAGCCTCGTTTGTGCGTCGGTAAAATGGCCACATTCGGGT-----TTCGCG---TCTGGCCTTGGGCCAAT-GCACG-------CCCCT-CACTAGCG----------GAAATGCCTCGACCACTCAG-CGCGCCTGTGTGACCAGCTGCTAACGC--GCCACAACAGGA Phaeobotryon_rhois_CFCC_89662 AGAAGGTAAGGCATC----------TTTC---------------CCCGC-CC--------TGCACGGGTGCAGCG----------------TTCCCGCTCGCACT---TTTGCCTTGACG--CCCCGGTGAGGGGCATTTTT-CTGGTGGT-GGGGTGCGACGCACGCTAAGCCTCGTTTGTGCGTCGGTAAAATGGCCACATTGAGTT-----TTTGCG---TCCGGCCTAAGGCCAAC-GCCCG------CCCCCT-CACTAGCG----------AAAATGCTCCGACCACTCAG-CGAGCTTGTGTGACCAGCTGCTAATGC--GCCACAATAGGA Phaeobotryon_rhois_CFCC_89663 AGAAGGTAAGGCATC----------TTTC---------------CCCGC-CC--------TGCACGGGTGCAGCG----------------TTCCCGCTCGCACT---TTTGCCTTGACG--CCCCGGTGAGGGGCATTTTT-CTGGTGGT-GGGGTGCGACGCACGCTAAGCCTCGTTTGTGCGTCGGTAAAATGGCCACATTGAGTT-----TTTGCG---TCCGGCCTAAGGCCAAC-GCCCG------CCCCCT-CACTAGCG----------AAAATGCTCCGACCACTCAG-CGAGCTTGTGTGACCAGCTGCTAATGC--GCCACAATAGGA Phaeobotryon_ulmi_CBS_114123 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AGGGGCATTTTT-CTCGTGGT-GGGGTGCGACGCGCGCTAAGCCTCGTTTGTGCGTCGGTAAAATGGCCACATCCGGGC----GAAGGCG---TCTGGCCTGAGGCCAAC-GGGCC-GCG-CCCCCCT-CGCTAGCG----------AAAATGCCCCGACCAGTCAG-CGGGCTTGTGTGACCAGCTGCTAATGC--GCCACAATAGGA Phaeobotryon_ulmi_CBS_123.30 AGAAGGTAAGGCGTC----------TTTC---------------CCCGCTCC--------TGCACGGGCGCAGCG----------------TTCGCGCTCGCGCT---CTTGGTGTGCCG--CCCCGGTGAGGGGCATTTTT--TCGTGGT-GGGGTGCGACGCGCGCTAAGCCTCGTTTGTGCGTCGGTAAAATGGCCACATCCGGGC----GTTGGCG---TCTGGCCTGAGGCCAAC-GGGCC-GCG--CCCCCT-CGCTAGCG----------AAAATGCCCCGACCAGTCAG-CGGGCTTGTGTGACCAGCTGCTAATGC--GCCACAATAGGA Phaeobotryon_ulmi_CBS_138854 AGAAGGTAAGGCGTC----------TTTC---------------CCCGCTCC--------TGCACGGGCGCAGCG----------------TTCGCGCTCGCGCT---CTTGGTGTGCCG--CCCCGGTGAGGGGCATTTTT-CTCGTGGT-GGGGTGCGACGCGCGCTAAGCCTCGTTTGTGCGTCGGTAAAATGGCCACATCCGGGC----GTTGGCG---TCTGGCCTGAGGCCAAC-GGGCC-GCG--CCCCCT-CGCTAGCG----------AAAATGCCCCGACCAGTCAG-CGGGCTTGTGTGACCAGCTGCTAATGC--GCCACAATAGGA Phaeobotryon_ulmi_CBS_174.63 AGAAGGTAAGGCGTC----------TTTC---------------CCCGCTCC--------TGCACGGGCGCAGCG----------------TTCGCGCTCGCGCT---CCTGCTGTGCCG--CCCCGGTGAGGGGCATTTTT-CTCGTGGT-GGGGTGCGACGCGCGCTAAGCCTCGTTTGTGCGTCGGTAAAATGGCCACATCCGGGC----GAAGGCG---TCTGGCCTGAGGCCAAC-GGGCC-GCG-CCCCCCT-CGCTAGCG----------AAAATGCCCCGACCAGTCAG-CGGGCTTGTGTGACCAGCTGCTAATGC--GCCACAATAGGA Sphaeropsis_citrigena_ICMP_16812 AGAAGGTAAGGCCAC-----------TTC---------------CCCGCTCC--------TGCACGTGTGCTGCG---------------CTGCTTGCGCGCGC----TCGGCCTTGTCG--CCGTGGTGAGGGGCATTTT---TCGTGGT-GGGGTGCGGGCGGCGCTAAGCCTCGTTTGCGCGTCGGCAAAATGCCCACATTGGGGT----TTTTGCG---ACCGGCGTGAGGCCGAC-GCTCG-------CCCCTCAGCTAGCG---------AAACATGCTCGCACCACTCGA---CGCTTGTGTGACCAGAGGCTAATGCGCGCCACTACAGGA Sphaeropsis_citrigena_ICMP_16818 AGAAGGTAAGGCCAC-----------TTC---------------CCCGCTCC--------TGCACGTGTGCTGCG---------------CTGCTTGCGCGCGC----TCGGCCTTGTCG--CCGTGGTGAGGGGCATTTT---TCGTGGT-GGGGTGCGGGCGGCGCTAAGCCTCGTTTGCGCGTCGGCAAAATGCCCACATTGGGGT----TTTTGCG---ACCGGCGTGAGGCCGAC-GCTCG-------CCCCTCAGCTAGCG---------AAACATGCTCGCACCACTCGA---CGCTTGTGTGACCAGAGGCTAATGCGCGCCACTACAGGA Sphaeropsis_eucalypticola_CBS_133993 AGAAGGTAAGGCGAC-----------TTC---------------CCCGCTCC--------TGCA--AGTGCTGCG---------------CTGCCTGCGTGCAC----CCGGTCTTGTAG--CCGTGATGAGGGGCATTTT---TCGTGGT-GGGGTGCGGGCGGCGCTAAGCCTCGTTTGCGCGTCGGCAAAATGCCCACATTTGGGT----TTTTGCG---ACCGGCGTGAGGCCGACGGCTCG-------ACTTT-CGCTAGCG---------AAGAATACTGTCACCACTCAA---CGCTTGTGTGACCAAAGGCTAATGCGCACTACTACAGGA Sphaeropsis_eucalypticola_MFLUCC_11_0654 AGAAGGTAAGGCGAC-----------TTC---------------CCCGCTCC--------TGCA--AGTGCTGCG---------------CTGCCTGCGTGCAC----CCGGTCTTGTAG--CCGTGATGAGGGGCATTTT---TCGTGGT-GGGGTGCGGGCGGCGCTAAGCCTCGTTTGCGCGTCGGCAAAATGCCCACATTTGGGT----TTTTGCG---ACCGGCGTGAGGCCGACGGCTCG-------ACTTT-CGCTAGCG---------AAGAATACTGTCACCACTCAA---CGCTTGTGTGACCAAAGGCTAATGCGCACTACTACAGGA Sphaeropsis_porosa_CBS_110496 AGAAGGTAAGGCGAC-----------TCC---------------CCCGCTCC--------TGCACGTGTGGTGTG----------GTGCGCTGCCTGCGCGCG------CGGCCTTGTCG--CCGTGGTGAGGGGCATTTT---TCGTGGT-GGGGTGCGGGCGGCGCTAAGCCTCGTTT--GCGTCGGCAAAACGCCCACATCTGGCT----TTTTGCG---CCCGGCGTGAGGCCGGC-CCTCG-------CCCCT-CGCTAGCG---------ACAGCTGCTCGCACCACTCAA---CGCTCGTGCAACCAGAGGCTAATGCGCGCCACTACAGGA Sphaeropsis_porosa_CBS_110574 AGAAGGTAAGGCGAC-----------TCC---------------CCCGCTCC--------TGCACGTGTGGTGTG----------GTGCGCTGCCTGCGCGCG------CGGCCTTGTCG--CCGTGGTGAGGGGCATTTT---TCGTGGT-GGGGTGCGGGCGGCGCTAAGCCTCGTTT--GCGTCGGCAAAACGCCCACATCTGGCT----TTTTGCG---CCCGGCGTGAGGCCGGC-CCTCG-------CCCCT-CGCTAGCG---------ACAGCTGCTCGCACCACTCAA---CGCTCGTGCAACCAGAGGCTAATGCGCGCCACTACAGGA Sphaeropsis_visci_CBS_100163 AGAAGGTAAGGCGAC----------TTTC---------------CCCGCTCC--------TGCACGTGTGGTGCG---------------CTGCGTGCGCCCG------CGGCCTTGACG--CCGTGGTGAGGGGCATTTT---TCGCAGT-GAGGTGCGGGCGGCGCTAGGCCTCGTTT--GTGTCGGCAAAATGCCCCCATCGGGCG----TTTGGCG---CCCGGCGTGAGGCCGAC-GCTCG-----CCCCCCT-CGCCTGCGAAAAAAATGAAAAATGCTCGCGCCACTAGA---CGCTTGTGCGACCAGAGGCTAATGCGCGCCACTACAGGA Sphaeropsis_visci_CBS_122527 AGAAGGTAAGGCGAC----------TTTC---------------CCCGCTCC--------TGCACGTGTGGTGCG---------------CTGCGTGCGCCCG------CGGCCTTGACG--CCGTGGTGAGGGGCATTTT---TCGCAGT-GAGGTGCGGGCGGCGCTAGGCCTCGTTT--GTGTCGGCAAAATGCCCCCATCGGGCG----TTTGGCG---CCCGGCGTGAGGCCGAC-GCTCG-----CCCCCCT-CGCCTGCGAAAAAAATGAAAAATGCTCGCGCCACTAGA---CGCTTGTGCGACCAGAGGCTAATGCGCGCCACTACAGGA Sphaeropsis_visci_CBS_186.97 AGAAGGTAAGGCGAC----------TTTC---------------CCCGCTCC--------TGCACGTGTGGTGCG---------------CTGCGTGCGCCCG------CGGCCTTGACG--CCGTGGTGAGGGGCATTTT---TCGCAGT-GAGGTGCGGGCGGCGCTAGGCCTCGTTT--GTGTCGGCAAAATGCCCCCATCGGGCG----TTTGGCG---CCCGGCGTGAGGCCGAC-GCTCG-----CCCCCCT-CGCCTGCGAAAAAAATGAAAAATGCTCGCGCCACTAGA---CGCTTGTGCGACCAGAGGCTAATGCGCGCCACTACAGGA Sphaeropsis_visci_CPC_33386 AGAAGGTAAGGCGAC----------TTTC---------------CCCGCTCC--------TGCACGTGTGGTGCG---------------CTGCGTGCGCCCG------CGGCCTTGACG--CCGTGGTGAGGGGCATTTT---TCGCAGT-GAGGTGCGGGCGGCGCTAGGCCTCGTTT--GTGTCGGCAAAATGCCCCCATCGGGCG----TTTGGCG---CCCGGCGTGAGGCCGAC-GCTCG-----CCCCCCT-CGCCTGCGAAAAAAATGAAAAATGCTCGCGCCACTAGA---CGCTTGTGCGACCAGAGGCTAATGCGCGCCACTACAGGA Sphaeropsis_visci_CPC_35525 AGAAGGTAAGGCGAC----------TTTC---------------CCCGCTCC--------TGCACGTGTGGTGCG---------------CTGCGTGCGCCCG------CGGCCTTGACG--CCGTGGTGAGGGGCATTTT---TCGCAGT-GAGGTGCGGGCGGCGCTAGGCCTCGTTT--GTGTCGGCAAAATGCCCCCATCGGGCG----TTTGGCG---CCCGGCGTGAGGCCGAC-GCTCG-----CCCCCCT-CGCCTGCGAAAAAAATGAAAAATGCTCGCGCCACTAGA---CGCTTGTGCGACCAGAGGCTAATGCGCGCCACTACAGGA ; END; BEGIN mrbayes; outgroup Lasiodiplodia_theobromae_CBS_164.96_T; charset locus1 = 1 -339; partition AllLoci = 1 : locus1; log start filename = PhaeobotryonTEFMB.log; END; BEGIN mrbayes; set partition = AllLoci; prset applyto = ( 1 ) statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); Lset applyto = ( 1 ) nst = 2 rates = gamma; unlink shape = ( all ) pinvar = ( all ) statefreq = ( all ) revmat = ( all ); mcmcp ngen = 1000000000 nchains = 4 printfreq = 10 temp = 0.2 samplefreq = 10 savebrlens = yes stoprule = yes stopval = 0.01 Relburnin = yes BurninFrac = 0.25 filename = PhaeobotryonTEFMB; mcmc; sump; sumt; END; BEGIN TREES; Title 'Trees from "S8C_PhaeobotryonTEFMB.nexus"'; ID 01761dec7f7869; LINK Taxa = Taxa; TRANSLATE [0] 1 Alanphillipsia_aloeicola_CBS_138896, [1] 2 Alanphillipsia_aloetica_CBS_136409, [2] 3 Alanphillipsia_euphorbiae_CBS_136411, [3] 4 Barriopsis_iraniana_CBS_124698, [4] 5 Barriopsis_iraniana_CBS_124699, [5] 6 Barriopsis_stevensiana_CBS_174.26, [6] 7 Barriopsis_tectonae_CBS_137786, [7] 8 Barriopsis_thailandica_MFLUCC_14_1190, [8] 9 Lasiodiplodia_theobromae_CBS_164.96, [9] 10 Oblongocollomyces_variabilis_CBS_121774, [10] 11 Oblongocollomyces_variabilis_CBS_121775, [11] 12 Oblongocollomyces_variabilis_CBS_121776, [12] 13 Phaeobotryon_aplospora_CFCC_53773, [13] 14 Phaeobotryon_aplospora_CFCC_53774, [14] 15 Phaeobotryon_aplospora_CFCC_53776, [15] 16 Phaeobotryon_cupressi_CBS_124700, [16] 17 Phaeobotryon_cupressi_CBS_124701, [17] 18 Phaeobotryon_mamane_CBS_122980, [18] 19 Phaeobotryon_mamane_CPC_12442, [19] 20 Phaeobotryon_negundinis_CAA_797, [20] 21 Phaeobotryon_negundinis_CAA_798, [21] 22 Phaeobotryon_negundinis_CAA_799, [22] 23 Phaeobotryon_negundinis_CPC_33384, [23] 24 Phaeobotryon_negundinis_CPC_33388, [24] 25 Phaeobotryon_negundinis_CPC_34752, [25] 26 Phaeobotryon_negundinis_MFLUCC_15_0436, [26] 27 Phaeobotryon_rhoinum_CFCC_52449, [27] 28 Phaeobotryon_rhoinum_CFCC_52450, [28] 29 Phaeobotryon_rhois_CFCC_89662, [29] 30 Phaeobotryon_rhois_CFCC_89663, [30] 31 Phaeobotryon_ulmi_CBS_114123, [31] 32 Phaeobotryon_ulmi_CBS_123.30, [32] 33 Phaeobotryon_ulmi_CBS_138854, [33] 34 Phaeobotryon_ulmi_CBS_174.63, [34] 35 Sphaeropsis_citrigena_ICMP_16812, [35] 36 Sphaeropsis_citrigena_ICMP_16818, [36] 37 Sphaeropsis_eucalypticola_CBS_133993, [37] 38 Sphaeropsis_eucalypticola_MFLUCC_11_0654, [38] 39 Sphaeropsis_porosa_CBS_110496, [39] 40 Sphaeropsis_porosa_CBS_110574, [40] 41 Sphaeropsis_visci_CBS_100163, [41] 42 Sphaeropsis_visci_CBS_122527, [42] 43 Sphaeropsis_visci_CBS_186.97, [43] 44 Sphaeropsis_visci_CPC_33386, [44] 45 Sphaeropsis_visci_CPC_35525; TREE Fig._S8C._Bayesian_phylogeny_of_the_different_genera_tef1_alignment. = (9:0.2028594,(((10:0.01425563,(11:0.002168187,12:0.00211818):0.00418526):0.08242292,(3:0.1078315,(2:0.01041907,1:0.0133269):0.06112671):0.01981949):0.03300459,((7:0.1041248,6:0.03705068):0.07461976,(8:0.003584569,(4:0.002353631,5:0.002603861):0.005577849):0.0981884):0.04452691):0.02949966,(((37:0.002542613,38:0.002336081):0.06735102,((35:0.002436178,36:0.002407978):0.0218519,((39:0.002448286,40:0.002722997):0.0441079,(41:0.002546789,42:0.002374759,43:0.002540609,44:0.002349646,45:0.002415533):0.06771862):0.018586):0.008808833):0.0638531,((29:0.002456816,30:0.002064912):0.03781882,((18:0.002604768,19:0.002376889):0.04780376,(27:0.002489977,28:0.002865313):0.02842143):0.01650314,((16:0.002501605,17:0.002318184):0.03038283,(20:0.002428564,21:0.002861324,22:0.002281769,23:0.002507318,24:0.002217989,25:0.002245072,26:0.002268376):0.03195405):0.0135495,((31:0.002957169,34:0.003464342):0.01208519,(32:0.002335967,33:0.002056473):0.005608576):0.06738466,(13:0.002666436,14:0.002492567,15:0.002277526):0.05913295):0.07295396):0.01458754); END; BEGIN TREES; Title 'Trees from "S8C_PhaeobotryonTEFMB.nexus"'; ID 01761dec7f7e70; LINK Taxa = Taxa; TRANSLATE [0] 1 Alanphillipsia_aloeicola_CBS_138896, [1] 2 Alanphillipsia_aloetica_CBS_136409, [2] 3 Alanphillipsia_euphorbiae_CBS_136411, [3] 4 Barriopsis_iraniana_CBS_124698, [4] 5 Barriopsis_iraniana_CBS_124699, [5] 6 Barriopsis_stevensiana_CBS_174.26, [6] 7 Barriopsis_tectonae_CBS_137786, [7] 8 Barriopsis_thailandica_MFLUCC_14_1190, [8] 9 Lasiodiplodia_theobromae_CBS_164.96, [9] 10 Oblongocollomyces_variabilis_CBS_121774, [10] 11 Oblongocollomyces_variabilis_CBS_121775, [11] 12 Oblongocollomyces_variabilis_CBS_121776, [12] 13 Phaeobotryon_aplospora_CFCC_53773, [13] 14 Phaeobotryon_aplospora_CFCC_53774, [14] 15 Phaeobotryon_aplospora_CFCC_53776, [15] 16 Phaeobotryon_cupressi_CBS_124700, [16] 17 Phaeobotryon_cupressi_CBS_124701, [17] 18 Phaeobotryon_mamane_CBS_122980, [18] 19 Phaeobotryon_mamane_CPC_12442, [19] 20 Phaeobotryon_negundinis_CAA_797, [20] 21 Phaeobotryon_negundinis_CAA_798, [21] 22 Phaeobotryon_negundinis_CAA_799, [22] 23 Phaeobotryon_negundinis_CPC_33384, [23] 24 Phaeobotryon_negundinis_CPC_33388, [24] 25 Phaeobotryon_negundinis_CPC_34752, [25] 26 Phaeobotryon_negundinis_MFLUCC_15_0436, [26] 27 Phaeobotryon_rhoinum_CFCC_52449, [27] 28 Phaeobotryon_rhoinum_CFCC_52450, [28] 29 Phaeobotryon_rhois_CFCC_89662, [29] 30 Phaeobotryon_rhois_CFCC_89663, [30] 31 Phaeobotryon_ulmi_CBS_114123, [31] 32 Phaeobotryon_ulmi_CBS_123.30, [32] 33 Phaeobotryon_ulmi_CBS_138854, [33] 34 Phaeobotryon_ulmi_CBS_174.63, [34] 35 Sphaeropsis_citrigena_ICMP_16812, [35] 36 Sphaeropsis_citrigena_ICMP_16818, [36] 37 Sphaeropsis_eucalypticola_CBS_133993, [37] 38 Sphaeropsis_eucalypticola_MFLUCC_11_0654, [38] 39 Sphaeropsis_porosa_CBS_110496, [39] 40 Sphaeropsis_porosa_CBS_110574, [40] 41 Sphaeropsis_visci_CBS_100163, [41] 42 Sphaeropsis_visci_CBS_122527, [42] 43 Sphaeropsis_visci_CBS_186.97, [43] 44 Sphaeropsis_visci_CPC_33386, [44] 45 Sphaeropsis_visci_CPC_35525; TREE 'Fig. S8C (bootstrap support values overlayed). First of six equally most parsimonious trees of the different genera tef1 alignment.' = (9:32,((((10:4,(11:0.0,12:0.0):1):20,3:46):6,(2:4,1:2):22):13,(((((37:0.0,38:0.0):20,(35:0.0,36:0.0):7):2,((39:0.0,40:0.0):16,(41:0.0,42:0.0,43:0.0,44:0.0,45:0.0):28):7):21,((7:71,6:17):16,(8:1,(4:4,5:0.0):1):19):13):9,((29:0.0,30:0.0):9,((((18:0.0,19:0.0):22,((27:0.0,28:0.0):7,((16:0.0,17:0.0):9,(20:0.0,21:0.0,22:0.0,23:0.0,24:0.0,25:0.0,26:4):11):6):6):2,((31:0.0,34:0.0):4,(32:1,33:0.0):1):18):5,(13:0.0,14:0.0,15:0.0):28):5):19):11):32):0.0; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 339; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 339; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 339; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1606913705167; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7130350973913691684; tell It; setDefaultOrder 6 5 4 21 22 19 18 20 0 1 2 3 42 43 44 29 30 25 26 31 32 33 34 35 36 37 27 28 23 24 38 40 41 39 9 10 7 8 11 12 13 14 15 16 17; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1672615920608558130; mqVersion 361; checksumv 0 3 656611918 null getNumChars 339 numChars 339 getNumTaxa 45 numTaxa 45 short true bits 15 states 15 sumSquaresStatesOnly 224843.0 sumSquares 224843.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 259; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1957 1216; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1672615920608558130 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 556; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1698 1144; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;