#NEXUS [written Wed Dec 02 14:02:26 CET 2020 by Mesquite version 3.61 (build 927) at 2017-15-inch-MacBook-Pro.local/192.168.2.86] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=30; TAXLABELS Dothiorella_sarmentorum_CBS_124720 Pseudofusicoccum_adansoniae_CBS_122053 Pseudofusicoccum_adansoniae_CBS_122054 Pseudofusicoccum_adansoniae_CBS_122055 Pseudofusicoccum_adansoniae_CBS_122056 Pseudofusicoccum_adansoniae_CBS_122057 Pseudofusicoccum_africanum_CMW_48027 Pseudofusicoccum_africanum_CMW_48028 Pseudofusicoccum_africanum_CMW_48030 Pseudofusicoccum_ardesiacum_CBS_122062 Pseudofusicoccum_ardesiacum_CBS_122063 Pseudofusicoccum_ardesiacum_CBS_122064 Pseudofusicoccum_artocarpi_CBS_138655 Pseudofusicoccum_calophylli_MFLUCC_17_2533 Pseudofusicoccum_kimberleyense_CBS_122058 Pseudofusicoccum_kimberleyense_CBS_122059 Pseudofusicoccum_kimberleyense_CBS_122060 Pseudofusicoccum_kimberleyense_CBS_122061 Pseudofusicoccum_kimberleyense_CPC_29627 Pseudofusicoccum_olivaceum_CBS_124939 Pseudofusicoccum_olivaceum_CBS_124940 Pseudofusicoccum_olivaceum_CPC_34655 Pseudofusicoccum_stromaticum_CBS_117448 Pseudofusicoccum_stromaticum_CBS_117449 Pseudofusicoccum_stromaticum_CBS_138362 Pseudofusicoccum_violaceum_CBS_115453 Pseudofusicoccum_violaceum_CBS_115594 Pseudofusicoccum_violaceum_CBS_124936 Pseudofusicoccum_violaceum_CBS_124937 Pseudofusicoccum_violaceum_CBS_124938 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=493; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Dothiorella_sarmentorum_CBS_124720 ATCATTACCGAGTT---GATTCGAGCTCCGGCTCGACTCTCCCACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGC---------CCGCGGTCGG-CCTC--------GTGCCGTCCAGCACCCGCCAGAGGACCACAAAACTCCAGTCAGTAAACGTCTCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCTCA-GGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGCGCATGGCG-TCGCCCGCCGGACGAACCTTTGAAT Pseudofusicoccum_adansoniae_CBS_122053 ATCATTACCGAGTTTTGGGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCCTGA-TCGGGGCTGGCCCGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTGTTGGGCAGCGTCCTCT-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTTTGAAT Pseudofusicoccum_adansoniae_CBS_122054 ATCATTACCGAGTTTTGGGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCCTGA-TCGGGGCTGGCCCGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTGTTGGGCAGCGTCCTCT-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTTTGAAT Pseudofusicoccum_adansoniae_CBS_122055 ATCATTACCGAGTTTTGGGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCCTGA-TCGGGGCTGGCCCGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTGTTGGGCAGCGTCCTCT-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTTTGAAT Pseudofusicoccum_adansoniae_CBS_122056 ATCATTACCGAGTTTTGGGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCCTGA-TCGGGGCTGGCCCGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTGTTGGGCAGCGTCCTCT-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTTTGAAT Pseudofusicoccum_adansoniae_CBS_122057 ATCATTACCGAGTTTTGGGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCCTGA-TCGGGGCTGGCCCGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTGTTGGGCAGCGTCCTCT-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTTTGAAT Pseudofusicoccum_africanum_CMW_48027 ?????????????????GGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCCTAG-CCGGGGCTGGCCCGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTATTGGGCGGCGTCCTCTCCGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTTTGAAT Pseudofusicoccum_africanum_CMW_48028 ?????????????????GGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCCTAG-CCGGGGCTGGCCCGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTATTGGGCGGCGTCCTCTCCGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTTTGAAT Pseudofusicoccum_africanum_CMW_48030 ?????????????????GGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCCTAG-CCGGGGCTGGCCCGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTATTGGGCGGCGTCCTCTCCGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTTTGAAT Pseudofusicoccum_ardesiacum_CBS_122062 ATCATTACCGAGTTTTGGGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCCTAG-CCGGGGCTGGCCTGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTATTGGGCAGCGTCCTCT-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCCCGCCGGACGAACCTTTGAAT Pseudofusicoccum_ardesiacum_CBS_122063 ATCATTACCGAGTTTTGGGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCCTAG-CCGGGGCTGGCCTGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTATTGGGCAGCGTCCTCT-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCCCGCCGGACGAACCTTTGAAT Pseudofusicoccum_ardesiacum_CBS_122064 ATCATTACCGAGTTTTGGGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCCTAG-CCGGGGCTGGCCTGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTATTGGGCAGCGTCCTCT-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCCCGCCGGACGAACCTTTGAAT Pseudofusicoccum_artocarpi_CBS_138655 ATCATTACCGAGTTTCGGGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTCCTCCGCGGCCGG-CCCCCTAG-CCGGGGCTGGCCTGCGCCCGCCAGAGGACCACAAAACTCCGGTCAGTGAACTTTGCCGTCTGACGTA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATCACACCCCTCAAGCTCTGCTTGGTATTGGGCAGCGTCCTCT-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTTTGAAT Pseudofusicoccum_calophylli_MFLUCC_17_2533 ATCATTACCGAGTTTTGGGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCCACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGGCCCCCCTAG-CCGGGGCTGGCCTGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTGTTGGGCAGCGTCCTCT-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTTTGAAT Pseudofusicoccum_kimberleyense_CBS_122058 ATCATTACCGAGTTTTGGGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCCTAG-CCGGGGCTGGCCTGCGCCCGCCAGAGGGCCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTATTGGGCAGCGTCCTCT-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTTTGAAT Pseudofusicoccum_kimberleyense_CBS_122059 ATCATTACCGAGTTTTGGGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCCTAG-CCGGGGCTGGCCTGCGCCCGCCAGAGGGCCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTATTGGGCAGCGTCCTCT-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCCCGCCGGACGAACCTTTGAAT Pseudofusicoccum_kimberleyense_CBS_122060 ATCATTACCGAGTTTTGGGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCCTAG-CCGGGGCTGGCCTGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTATTGGGCAGCGTCCTCT-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTTTGAAT Pseudofusicoccum_kimberleyense_CBS_122061 ATCATTACCGAGTTTTGGGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCCTAG-CCGGGGCTGGCCTGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTATTGGGCAGCGTCCTCT-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTTTGAAT Pseudofusicoccum_kimberleyense_CPC_29627 ATCATTACCGAGTTTTGGGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCCTAG-CCGGGGCTGGCCTGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTATTGGGCAGCGTCCTCT-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTTTGAAT Pseudofusicoccum_olivaceum_CBS_124939 ATCATTACCGAGTTTTGGGTCTCCTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCTTAA-CCGGGGCTGGCCTGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCTTCAAGCTCTGCTTGGTATTGGGCAGCGTCCTTT-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTCTGAAT Pseudofusicoccum_olivaceum_CBS_124940 ATCATTACCGAGTTTTGGGTCTCCTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCTTAACCCGGGGCTGGCCTGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCTTCAAGCTCTGCTTGGTATTGGGCAGCGTCCTTT-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTCTGAAT Pseudofusicoccum_olivaceum_CPC_34655 ATCATTACCGAGTTTTGGGTCTCCTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCTTAA-CCGGGGCTGGCCTGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCTTCAAGCTCTGCTTGGTATTGGGCAGCGTCCTTT-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTCTGAAT Pseudofusicoccum_stromaticum_CBS_117448 ATCATTACCGAGTTTTGGGTCTCCTCATCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCTTGA-CCGGGGCTGGCCTGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATTTA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTGTTGGGCGGCGTCCTCC-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTTTGAAT Pseudofusicoccum_stromaticum_CBS_117449 ATCATTACCGAGTTTTGGGTCTCCTCATCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCTTGA-CCGGGGCTGGCCTGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATTTA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTGTTGGGCGGCGTCCTCC-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTTTGAAT Pseudofusicoccum_stromaticum_CBS_138362 ATCATTACCGAGTTTTGGGTCTCCTCATCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCCTGA-CCGGGGCTGGCCTGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATTTA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTGTTGGGCGGCGTCCTTC-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTTTGAAT Pseudofusicoccum_violaceum_CBS_115453 ATCATTACCGAGTTTTGGGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCCTAG-CCGGGGCTGGCCTGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTATTGGGCAGCGTCCTCT-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTTTGAAT Pseudofusicoccum_violaceum_CBS_115594 ATCATTACCGAGTTTTGGGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCCTAG-CCGGGGCTGGCCTGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTATTGGGCAGCGTCCTCT-CGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTTTGAAT Pseudofusicoccum_violaceum_CBS_124936 ATCATTACCGAGTTTTGGGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCCTAG-CCGGGGCTGGCCTGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTATTGGGCGGCGTCCTCTCCGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTTTGAAT Pseudofusicoccum_violaceum_CBS_124937 ATCATTACCGAGTTTTGGGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCCTAG-CCGGGGCTGGCCTGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTATTGGGCGGCGTCCTCTCCGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTTTGAAT Pseudofusicoccum_violaceum_CBS_124938 ATCATTACCGAGTTTTGGGTCTCTTCACCGAGCCCACTCTCCAACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTTCTCCGCGGCCGG-CCCCCTAG-CCGGGGCTGGCCTGCGCCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACTTTGCTGTCTGATATA-AATTCAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCTCTGCTTGGTATTGGGCGGCGTCCTCTCCGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGGACGGGACGACCGCTCGCCGGACGAACCTTTGAAT ; END; BEGIN mrbayes; outgroup Dothiorella_sarmentorum_CBS_124720; charset locus1 = 1 -493; partition AllLoci = 1 : locus1; log start filename = PseudofusicoccumITSMB.log; END; BEGIN mrbayes; set partition = AllLoci; prset applyto = ( 1 ) statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); Lset applyto = ( 1 ) nst = 2 rates = propinv; unlink shape = ( all ) pinvar = ( all ) statefreq = ( all ) revmat = ( all ); mcmcp ngen = 1000000000 nchains = 4 printfreq = 10 temp = 0.2 samplefreq = 10 savebrlens = yes stoprule = yes stopval = 0.01 Relburnin = yes BurninFrac = 0.25 filename = PseudofusicoccumITSMB; mcmc; sump; sumt; END; BEGIN TREES; Title 'Trees from "S9A_PseudofusicoccumITSMB.nexus"'; ID 01761ded3ccc75; LINK Taxa = Taxa; TRANSLATE [0] 1 Dothiorella_sarmentorum_CBS_124720, [1] 2 Pseudofusicoccum_adansoniae_CBS_122053, [2] 3 Pseudofusicoccum_adansoniae_CBS_122054, [3] 4 Pseudofusicoccum_adansoniae_CBS_122055, [4] 5 Pseudofusicoccum_adansoniae_CBS_122056, [5] 6 Pseudofusicoccum_adansoniae_CBS_122057, [6] 7 Pseudofusicoccum_africanum_CMW_48027, [7] 8 Pseudofusicoccum_africanum_CMW_48028, [8] 9 Pseudofusicoccum_africanum_CMW_48030, [9] 10 Pseudofusicoccum_ardesiacum_CBS_122062, [10] 11 Pseudofusicoccum_ardesiacum_CBS_122063, [11] 12 Pseudofusicoccum_ardesiacum_CBS_122064, [12] 13 Pseudofusicoccum_artocarpi_CBS_138655, [13] 14 Pseudofusicoccum_calophylli_MFLUCC_17_2533, [14] 15 Pseudofusicoccum_kimberleyense_CBS_122058, [15] 16 Pseudofusicoccum_kimberleyense_CBS_122059, [16] 17 Pseudofusicoccum_kimberleyense_CBS_122060, [17] 18 Pseudofusicoccum_kimberleyense_CBS_122061, [18] 19 Pseudofusicoccum_kimberleyense_CPC_29627, [19] 20 Pseudofusicoccum_olivaceum_CBS_124939, [20] 21 Pseudofusicoccum_olivaceum_CBS_124940, [21] 22 Pseudofusicoccum_olivaceum_CPC_34655, [22] 23 Pseudofusicoccum_stromaticum_CBS_117448, [23] 24 Pseudofusicoccum_stromaticum_CBS_117449, [24] 25 Pseudofusicoccum_stromaticum_CBS_138362, [25] 26 Pseudofusicoccum_violaceum_CBS_115453, [26] 27 Pseudofusicoccum_violaceum_CBS_115594, [27] 28 Pseudofusicoccum_violaceum_CBS_124936, [28] 29 Pseudofusicoccum_violaceum_CBS_124937, [29] 30 Pseudofusicoccum_violaceum_CBS_124938; TREE Fig._S9A._Bayesian_phylogeny_of_the_Pseudofusicoccum_ITS_alignment. = (1:0.06620974,14:0.002647579,13:0.009415336,10:0.0008891888,11:0.0008656774,12:0.0009185366,26:0.0009108233,27:0.0008806174,19:0.0008552622,15:0.001846791,16:0.002083106,17:0.0009437828,18:0.0008874052,(22:0.0008649361,20:0.0008837592,21:0.0008925431):0.007952316,((25:0.002182983,(23:0.0009013384,24:0.0008485499):0.002215429):0.007376329,(6:0.0009126699,2:0.00087459,3:0.0008779809,4:0.0008563733,5:0.0008641671):0.003628618):0.003634126,((7:0.0008925051,8:0.0008216284,9:0.0008876382):0.002016718,28:0.0009224837,29:0.0008809532,30:0.0008659645):0.002065585); END; BEGIN TREES; Title 'Trees from "S9A_PseudofusicoccumITSMB.nexus"'; ID 01761ded3ccf76; LINK Taxa = Taxa; TRANSLATE [0] 1 Dothiorella_sarmentorum_CBS_124720, [1] 2 Pseudofusicoccum_adansoniae_CBS_122053, [2] 3 Pseudofusicoccum_adansoniae_CBS_122054, [3] 4 Pseudofusicoccum_adansoniae_CBS_122055, [4] 5 Pseudofusicoccum_adansoniae_CBS_122056, [5] 6 Pseudofusicoccum_adansoniae_CBS_122057, [6] 7 Pseudofusicoccum_africanum_CMW_48027, [7] 8 Pseudofusicoccum_africanum_CMW_48028, [8] 9 Pseudofusicoccum_africanum_CMW_48030, [9] 10 Pseudofusicoccum_ardesiacum_CBS_122062, [10] 11 Pseudofusicoccum_ardesiacum_CBS_122063, [11] 12 Pseudofusicoccum_ardesiacum_CBS_122064, [12] 13 Pseudofusicoccum_artocarpi_CBS_138655, [13] 14 Pseudofusicoccum_calophylli_MFLUCC_17_2533, [14] 15 Pseudofusicoccum_kimberleyense_CBS_122058, [15] 16 Pseudofusicoccum_kimberleyense_CBS_122059, [16] 17 Pseudofusicoccum_kimberleyense_CBS_122060, [17] 18 Pseudofusicoccum_kimberleyense_CBS_122061, [18] 19 Pseudofusicoccum_kimberleyense_CPC_29627, [19] 20 Pseudofusicoccum_olivaceum_CBS_124939, [20] 21 Pseudofusicoccum_olivaceum_CBS_124940, [21] 22 Pseudofusicoccum_olivaceum_CPC_34655, [22] 23 Pseudofusicoccum_stromaticum_CBS_117448, [23] 24 Pseudofusicoccum_stromaticum_CBS_117449, [24] 25 Pseudofusicoccum_stromaticum_CBS_138362, [25] 26 Pseudofusicoccum_violaceum_CBS_115453, [26] 27 Pseudofusicoccum_violaceum_CBS_115594, [27] 28 Pseudofusicoccum_violaceum_CBS_124936, [28] 29 Pseudofusicoccum_violaceum_CBS_124937, [29] 30 Pseudofusicoccum_violaceum_CBS_124938; TREE 'Fig. S9A (bootstrap support values overlayed). First of 30 equally most parsimonious trees of the Pseudofusicoccum ITS alignment.' = ((((((25:1,(23:0.0,24:0.0):1):4,(6:0.0,2:0.0,3:0.0,4:0.0,5:0.0):3):2,(22:0.0,20:0.0,21:1):4):2,((7:0.0,8:0.0,9:0.0):1,28:0.0,29:0.0,30:0.0):2,14:3,13:7,26:0.0,27:0.0,19:0.0,15:1,17:0.0,18:0.0):1,10:0.0,11:0.0,12:0.0,16:1):22,1:42):0.0; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 493; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 493; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 493; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1606914146188; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5081243423884992185; tell It; setDefaultOrder 29 10 11 12 13 9 6 7 8 16 17 18 15 14 25 26 27 28 24 4 5 3 1 2 0 19 20 21 22 23; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 387065250398093075; mqVersion 361; checksumv 0 3 4095781678 null getNumChars 493 numChars 493 getNumTaxa 30 numTaxa 30 short true bits 15 states 15 sumSquaresStatesOnly 304522.0 sumSquares 304522.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 259; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1775 1276; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #387065250398093075 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 493; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1516 1204; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;