#NEXUS [written Thu Sep 02 16:52:19 CEST 2021 by Mesquite version 3.70 (build 940) at 201715inchMBP/192.168.2.86] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=22; TAXLABELS Chytridium_lagenaria_FJ804156 Gongronella_brasiliensis_KY114933 Gongronella_lacrispora_MH869737 Gongronella_namwonensis_MN658482 Gongronella_guangdongensis_MN947304 Gongronella_sichuanensis_MK813857 Absidia_bonitoensis_MN977805 Absidia_montepascoalis_MW561560 Absidia_jindoensis_MF926616 Absidia_anomala_JN206593 Absidia_multispora_MN953782 Absidia_caatinguensis_KT308170 'Absidia cylindrospora var. nigra NG_058560' 'Absidia panacisoli NG_063948' Absidia_cylindrospora_MK674163 Absidia_cylindrospora_JX961699 Absidia_cylindrospora_var._cylindrospora_JN206588 Absidia_psychrophilia_KT215321 'Absidia psychrophilia NG_058544' 'Absidia repens NG_058551' Absidia_pararepens_MT192308 Absidia_pararepens_AF113448 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1078; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Chytridium_lagenaria_FJ804156 -----------------------------------------------------------ggagaagactacagggattcccctagtaacggcgagtgaagcgggatgagctcaacttt-gaaatctcgcgg---gtttcccgtgcgaattgtagtctaaagaagcgctttcgg-----gggcagcctgggtaa--aagtcctttggaagaaggcatcagagagggtgagaatcccgtacctgacccg-gt--gtctgct-cctatgtgatgcgtcttcctagagtcggatagcttgggaatgctgtccaaatcgggtggtaaataccatctaaggctaaatattggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaacagtacgtgaaattgtctaaagggaacggcttgaaaccagtattgcgtgtaatagatcagccgtccatat--gggcg-gtgcactctattgca--tg-cgggtcagcatcgg-tttgatttgggttataaa-gct-gtcgacaggtagctcc---------tcggagtgttatagtcttcagt--catgccccggattagaccgaggaacgcagccttgtta-cgg--ggg-------aaccttccgcctcg-gatgtcg-cactgtcaaac--aac-ttgttg-attgct-ggtgttaagtctgcgcacggttggcta--ccacttc-tgggcttaggatgctgacgaaatggttttaaaccacccgtcttgaaacacggaccaaggagtccaacacata-tgcgagtctttgggtg-gcaaacccacgggcgtaatgaaagtgaaa--gggtaccaacttc----ggt-gcagtaccgaccgg-tctggatttttat---gatggatctgagtatgagcatatgtgc-tgggacccgaaagatggtgaactatgcctggatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatctgggtataggggcgaaagactaatcaacct??aa Gongronella_brasiliensis_KY114933 -------------------------------------------------------------agaaaataacaatgattcccctagtaacggcgagtgaagagggaaaagctcaagtttggaagcttcgtggcatagctacgacgcg--ttgtaaact---gaagttttttgggtgattgggcgacc-ggataaataagtcctttggaaaggggcaacatagagggtgacattcccgtctttggtccgagt--cagtgcagtcgctgcc-caggaaacgac-gagtcaggttgtttgggaatgcagcctaaaatgggaggtaaatctctcctaaagctaaatactggcgtaagaccgatagcgaacaagtaccgtgagggaaagatgaaaaggactttgaaaagagggtcaaatagtacgtgaaattgttgaaagggaaccgtatgaaagtagactggcttggtgatgatcaa-tgtgtgtttcggcacgcatgcactc-attgcctttg-ccagccagcggcagtttttgctaaaggaagaaaatca-ggggaa-tgtagcttcgat-ttcggttgaagtgttatagctcctggtaaaatactttggcagagactgaggctagcagtg--ggt?-ttt--ggg-------aactttgcgcgctt-gtcgtcc-aatggctaagttttc---ttcgg-a-tgcttggttattgggtggcaactcgtgtgatgcttcaccct-cccgc-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Gongronella_lacrispora_MH869737 --------------------------------------------------agcggaggaaaagaaaataacaatgattcccctagtaacggSgagtgaagagggaaaagctcaagtttggaagcttcgtggcatagctacgacgcg--ttgtaaact---gaagttttttgggtgattgggcgacc-ggataaataagtcctttggaaaggggcaacatagagggtgacattcccgtctttggtccgagt--cagtgcagtcgctacc-caggaaacgac-gagtcaggttgtttgggaatgcagcctaaaatgggaggtaaatctctcctaaagctaaatactggcgtaagaccgatagcgaacaagtaccgtgagggaaagatgaaaaggactttgaaaagagggtcaaatagtacgtgaaattgttgaaagggaaccgtatgaaagtagactggcttggtgatgatcaa-tgtgtgtttcggcacgcatgcactc-attgcctttg-ccagccagcggcagtttttgctaaaggaagaaaatca-ggggaa-tgtggcttcgat-ttcggttgaagtgttatagctcctggtaaaatactttggcagagactgaggctagcagtg--ggtt-ttt--ggg-------aactttgcgcgctt-gtcgtcc-aatggtcaagttttc---ttcgg-a-tgcttggttattgggtggcaactcgtgtgatgcttcaccct-cccgcttaggtcgctggcgtaatgcttttatatgacccgtcttgaaacacggaccaaggagtcc-acgtatagagcgagtcgttgggtg-gcaaacccaaaggcgaagtgaaagcgatt--gggaagaaactgtaacaggtggcactcccggggggatatgacgttttatacagattgacctcacccaaagc-tctatgcatgggacccgaaagatggtgaactatacttgaatagggtgaagccagaggaaactctggtggaggctcgtagcgattctgacgtgcaaatcgatcgtcgaatttgagtataggggcg-------------------- Gongronella_namwonensis_MN658482 ------------------------------------------------------------------------------------------------------------------------------------------------------------t---gaagttttttgggtgattgggcgacc-ggataaataagtcctttggaaaggggcaacatagagggtgacattcccgtctttggtccgagt--cagtgcagtcgctacc-caggaaacgac-gagtcaggttgtttgggaatgcagcctaaaatgggaggtaaatctctcctaaagctaaatactggcgtaagaccgatagcgaacaagtaccgtgagggaaagatgaaaaggactttgaaaagagggtcaaatagtacgtgaaattgttgaaagggaaccgtatgaaagtagactggcttggtgatgatcaa-tgtgtgtttcggcacgcatgcactc-attgcctttg-ccagccagcggcagtttttgctaaaggaagaaaatca-ggggaa-tgtggcttcgat-ttcggttgaagtgttatagctcctggtaaaatactttggcagagactgaggctagcagtg--ggtt-ttt--ggg-------aactttgcgcgctt-gtcgtcc-aatggtcaagttttc---ttcgg-a-tgcttggttattgggtggcaactcgtgtgatgcttcaccct-cccgcttaggtcgctggcgtaatgcttttatatgacccgtcttgaaacacggaccaaggagtcc-acgtatagagcgagtcgttgggtg-gcaaacccaaaggcgaagtgaaagcgatt--gggaagaaactgtaacaggtggcactcccggggggatatgacgttttatacagattgacctcacccaaagc-tctatgcatgggacccgaaagatggtgaactatacttgaatagggtgaagccagaggaaactctggtggaggctcgtagcgattctgacgtgcaaatcgatcgtcgaatttgagtataggggcgaaagactaatcgaaccatct Gongronella_guangdongensis_MN947304 ---------------------------------------------------------gaaaagaaaataacaatgattcccctagtaacggcgagtgaagagggaaaagctcaagtttggaagcttcgtggcataggtacgacgcg--ttgtaaact---gaagttttttgggtgattgggcgacc-ggataaataagtcctttggaaaggggcaacatagagggtgacattcccgtctttggtccgagt--cagtgcagtcgctacc-caggaaacgac-gagtcaggttgtttgggaatgcagcctaaaatgggaggtaaatctctcctaaagctaaatactggcgtaagaccgatagcgaacaagtaccgtgagggaaagatgaaaaggactttgaaaagagggtcaaatagtacgtgaaattgttgaaagggaaccgtatgaaagtagactggcttggtgatgatcaa-tgtgtgtttcggcacgcatgcactc-attgcctttg-ccagccagcggcagtttttgctaaaggaagaaaatca-ggggaa-tgtggcttcgac-ttcggttgaagtgttatagctcctggtaaaatactttggcagagactgaggctagcagtg--ggtt-ttt--ggg-------aactttgcgcgctt-gtcgtcc-aatggtcaagttttc---ttcgg-a-tgcttggttattgggtggcaactcgtgtgatgcttcaccct-cccgcttaggtcgctggcgtaatgcttttatatgacccgtcttgaaacacggaccaaggagtcc-acgtatagagcgagtcgttgggtg-gcaaacccaaaggcgaagtgaaagcgatt--gggaagaaactgttacaggtggcactcccggggggatatgacgttttatacagattgacctcacccaaagc-tctatgcatgggacccgaaagatggtgaactatacttgaatagggtgaagccagaggaaactctggtggaggctcgtagcgattctgacgtgcaaatcgatcgtcgaatttgagtataggggcgaaaga--------------- Gongronella_sichuanensis_MK813857 --------------------------------------------------------------------------------------------------------------------------------tggcatagctacgacgcg--ttgtaaact---gaagttttttgggtgattgggcgacc-ggataaataagtcctttggaaaggggcaacatagagggtgacattcccgtctttggtccgagt--cagtgcagtcgctacc-caggaaacgac-gagtcaggttgtttgggaatgcagcctaaaatgggaggtaaatctctcctaaagctaaatactggcgtaagaccgatagcgaacaagtaccgtgagggaaagatgaaaaggactttgaaaagagggtcaaatagtacgtgaaattgttgaaagggaaccgtatgaaagtagactggcttggtgatgatcaa-tgtgtgtttcggcacgcatgcactc-attgcctttg-ccagccagcggcagtttttgctaaaggaagaaaatca-ggggaa-tgtggcttcgac-ttcggttgaagtgttatagctcctggtaaaatactttggcagagactgaggctagcagtg--ggtt-ttt--ggg-------aactttgcgcgctt-gtcgtcc-aatggtcaagttttc---ttcgg-a-tgcttggttattgggtggcaactcgtgtgatgcttcaccct-cccgcttaggtcgctggcgtaatgcttttatatgacccgtcttgaaacacggaccaaggagtcc-acgtatagagcgagtcgttgggtg-gcaaacccaaaggcgaagtgaaagcgatt--gggaagaaactgttacaggtggcactcccggggggatatgacgttttatacagattgacctcacccaaagc-tctatgcatgggacccgaaagatggtgaactatacttgaatagggtgaagccagaggaaactctggtggaggctcgtagcgattctgacgtgcaaatcgatcgtcgaatttgagtataggggcgaaagactaatcgaaccatct Absidia_bonitoensis_MN977805 -----------------------------------------------------------------------------------------------------------------------------------------------------tgtaaact---aaagttttcaggtagtttggctagcc-cggtaaataagttctctggaaagggacgacaaagagggtgaaatccccgtttttggccggagca-tagtcttgcgtttgct-t-gggaatgaa-gagtcaggttgtttggtattgcagcctaaagtgggaggtaaatctctcctaaagctaaatattgacgaaagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcaccttgaaaagggggtcaaaaagtacgtgaaattgctgaaagggaaccgtatgaaatcagcttggccgtatagtaatcag-cctaaatttcgatttgggtgcactt-gctatttg-gttcagcctacgacaattttgctcgggggaa-aaaatca-ggggaaatgtagcttcggc-ctcggtcgaagtgttataggcctttgaaaaatactctgggcgggattgaggaacgcagca--agcc-ttt--ggg----atgaactgtgggcgcttattggccg?tggggggaaatttcta-ttcaggtagtgttctctcaatggttggtaactcggccactttttcttttt-cttgcttaggtcgtaggcataatgattttatac?acccgtctt------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Absidia_montepascoalis_MW561560 ------------------------------------------------------------------------atgattcccccagtaatggcgaatgaacagggaaaagctcaaagttggaacctcctggccctaggttaggcgga--ttgtaaact---aaagttttcgagtagtttggctagcc-cggtaaataagttctctggaaagggacgacaaagagggtgaaatccccgtttttggccggagca-tagtcttgcgtttgct-t-gggaatgaa-gagtcaggttgtttggtattgcagcctaaagtgggaggtaaatctctcctaaagctaaatattgacgaaagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcaccttgaaaagggggtcaaaaagtacgtgaaattgctgaaagggaaccgtatgaaatcagcttggccgtatagtaatcag-cctaaactttggtttgggtgcactt-gctatttg-gtacagcctacgacaattttgctcgggggaa-aaaatca-ggggaaatgtagcttcggc-ctcggtcgaagtgttataggcctttgaaaaatactctgggcgggattgaggaacgcagca--agcc-ttt--ggg----atgaactgtgggcgcttattggccattggggggaaatttcta-ttcaggtagtgttctctcaatggttggtaactcggccactttttctttct-cttgcttaggtcgtaggcataatgattttatatgacccgtcttgaaacacggaccaaggagtcc-accattattgcgagtctttgggcgtaaaaactcatcggcgcaaggaaactgaccaagatatgaaggcgcaa--gctggcaatatcctccagcgaagacgttttatactgaattgactgagagaaagc-aataatgatgggacccgaaagatggtgaactatacttgaatagggtgaagccagaggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaatttgagtataggggcgaaagactaatcgaaccatct Absidia_jindoensis_MF926616 -------------------------------------------------------------------------------------------------------gcatagctcaaagttggaacctcctggccttaggttaggcgga--ttgtaaact---aaagttctcgagtagtttggttagcc-cggtaaataagttctctggaaagggacgacaaagagggtgagatccccgtttttggccggagca-taatcttgcgtttgct-t-gggaatgaa-gagtcaggttgtttggtattgcagcctaaagttggaggtaaatctctcctaaagctaaatattgacgaaagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcaccttgaaaagggggtcaaaaagtacgtgaaattgctgaaagggaaccgtatgaaatcagcttggccttgtagtcatcag-cctgaactttggtttgggtgcactg-gctactag-gtacagcctaggacaattttgtttggaggaa-aaaatca-ggggaaatgtggcctcggcttttggttgaggtgttatagtcctttgaaaaatactctgggcgggattgaggaacgcagca--agccattt--ggg----atgaactgggggtgcttattcgtgtagggcaggaaatttcta-ttcaggtagtgttctgtcatgcatgggtaactcgcccactttttcttttt-cttgcttaggtcgtaggcataatgattttatatgac------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Absidia_anomala_JN206593 ---------------------------------------------------gcggaggaaaagaaaataacaatgattcccccagtaatggcgaatgaacagggaaaagctcaaagttggaacctcctggccttaggttaggcgga--ttgtaaact---aaagttttcgagtagtttggctagcc-tggtaaataagttctctggaaagggacgacaaagagggtgaaatccccgtttttggccagagttttagtcttgcgtttgct-t-gggaatgaa-gagtcaggttgtttggtattgcagcctaaagtgggaggtaaatctctcctaaagctaaatattgacgaaagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcaccttgaaaagggggtcaaaaagtacgtgaaattgctgaaagggaaccgtatgaaatcagtttggccagctagtaatcaa-cctagactttggtttgggtgcactt-gctagtag-gtacagcttacgacaattttgctcgggggaa-aaaatca-ggggaaatgtagcttcgac-ttcggttgaagtgttatagtcctttgaaaaatactctgggtgggattgaggaatgcagca--agcc-ttt--ggg----atgaactgtgggtgcttgttggctttgaaggggaaatttcta-ttcaggtagtgttcttttcagggccgataactcgcctactttttcttttt-cttgcttaggtcgta-gcataatga-tttatatgac------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Absidia_multispora_MN953782 ---------------------------------------------------gcggaggaaaagaaaataacaatgattccctcagtaatggcgaatgaacagggaaaagctcaaagttggaacctcctggccttaggttaggcgga--ttgtaaact---aaagttttcgagtagtttggctagcc-tggtaaataagttctctggaaagggacgacaaagagggtgaaatccccgtttttggccagagttttagtcttgcgtttgct-t-gggaatgaa-gagtcaggttgtttggtattgcagcctaaagttggaggtaaatctctcctaaagctaaatattgacgaaagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcaccttgaaaagggggtcaaaaagtacgtgaaattgctgaaagggaaccgtatgaaatcagtttggccagttagtaatcaa-cctaaactttggtttgggtgcactt-gctagcag-gtacagcttacgacaattttgctcgggggaa-aaaatca-ggggaaatgtagcttcggc-ctcggttgaagtgttatagtcctttgaaaaatactctgggcgggattgaggaacgcagca--agcc-ttt--ggg----atgaactgtgggtgcttgttggctctgaggaggaaatttcta-tttaggtagtgttcttttcagggctgataactcgcctactttttcttttt-cttgcttaggtcgtaggcataatgattttatatgac------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Absidia_caatinguensis_KT308170 ---------------------------------------gcatatcaataagcggaggaaaagaaa?t?acaatgattcccccagtaacggcgagtgaacagggaaaagctcaaagttggaacctcctggccctaggctaggcgga--ttgtaaact---aaagctttcgagtagtttggctggcc-cggtaatcaagttctctggaaagaggcgacaaagagggtgaaatccccgtttttggccggagcattagtcttgcgtttgct-t-gaaggtgaa-gagtcaggttgtttggtattgcagcctaaagtgggaggtaaatctctcctaaagctaaatattgacgaaagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcaccttgaaaagggggtcaaaaagtacgtgaaattgctgaaagggaaccgtatgaaatcagtctggccgcttgataatcag-cctaaactttggtttgggtgcactt-gtcatttg-gtacagcctacgacaatttgatttgggggaa-aaaatcaaggagaa-tgtggcctaggc-ttcggcagaggtgttatagctctttgaaaaatactctggattggattgaggactgcagca--agcc-ttt--ggg----atgaactgtgggcgcttggcgtttgttggggggaaatttcta-ttcaggtagtgttccttcaatgagtgtcaactcgcctactttttcttttt-cttgcttaggtcgtaggcataatgattttatacgacccgtcttgaaacacggacc------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Absidia cylindrospora var. nigra NG_058560' ---------------------------------------------------gcggaggaaaagaaaataacaatgattcccccagtaacggcgagtgaacagggaaaagctcaaagttggaacctcctggccctaggcctggcgga--ttgtaaact---aaagctctcgagtagtttggctagcc-cagtaatcaagttctctggaaagggacgacaaagagggtgaaatccccgtttttggctggagca-tagtcttgcgtttgct-t-ggaagcgaa-gagtcaggttgtttggtattgcagcctaaagctggaggtaaatctctcctaaagctaaatattgacgaaagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcaccttgaaaagggggtcaaaaagtacgtgaaattgctgaaagggaaccgtatgaaatcagcctgtccctttggtaatcaa-cctggactttggtctgggtgcactt-gccagtgg-gtacagcctgcgacaatttgatttgggggaa-aaaatcagggggaa-tgtggcctcggc-ttcggtcgtggtgttatagccctttgaaaaataccctgggttggattgaggactgcagcg--agcc-cttttggggg--atgaactgtgggcgcttggttcgtgttgggaggaaatctctactttgggtagtgttcttccagcatgagccaacccgcctactttttcttttt-ctcgcttaggtcgca-gcctaatga-tttatatgac------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Absidia panacisoli NG_063948' ------------------------acccgctgaacttaagcatatcaataagcggaggaaaagaaaataacaatgattcccccagtaacggcgagtgaacagggaaaagctcaaagttggaacctcctggccttaggtctggcgga--ttgtaaact---aaagctctagagtagtttggctggcc-cggtaaaaaagttctctggaaagggacgacaaagagggtgaaatccccgtttttggccggagca-tagtctcacgtttgct-c-tttagcgaa-gagtcaggttgtttggtattgcagcctaaagttggaggtaaatctctcctaaagctaaatattgacgaaagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcaccttgaaaagggggtcaaaaagtacgtgaaattgctgaaagggaacggtatgaaatcagactgtctttttggtaatcag-cctgggctttggcctgggtgcactt-gccagtaa-gtacagcctacgacaatttgaagcgtgggaa-aaaatcagggggaa-tgtggcctcggc-ttcggcggaggtgttatagccccttgaaaaataccatgctttggattgaggactgcagtg--agccatta--ggg----atgaactgtaggcgcttagtttcggtaaggaaggaatctctgcttcgggtggtgccttttttctcgggattaacccgtttactttttcttttt-ctcgcttaggtcgtaggcataatgattttatatcacccgtcttgaaacacggaccaaggagtcc-accatgattgcgagtctttgggtgtagaaacccatgggcggaaggaaactgaccaagatatgaaggcgcaa--gctggcaatatcctccagcgaggacgttttatactgaattgactgagagaaagc-aattatgatgggacccgaaagatggtgaactatacttgaatagggtgaagccagaggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaatttgagtataggggcgaaagactaatcgaaccatct Absidia_cylindrospora_MK674163 cttgatctgaaatcaggcgggattacccgctgaacttaagcatatcaataagcggaggaaaagaaaataacaatgattccctcagtaacggcgagtgaacagggaaaagctcaaagttggaacctcctggccctaggtctggcgga--ttgtaaact---aaagctctcgagtagttcggctagcc-tggtaaaaaagttctctggaaagggacgacatggagggtgaaatccccgtctttggccagagca-tagtccaacgtttgct-t-ggaagtgaa-gagtcaggttgtttggtattgcagcctaaagctggaggtaaatctctcctaaagctaaatattgacgaaagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttgaaaagagggtcaaaaagtacgtgaaattgctgaaagggaaccgtatgaaatcagcctgtctctttggtaatcaa-cctggaattcgttctgggtgcactt-gccggtga-gt-cagcctgcgacaatttgacttgggggaa-aaaatcggggggaa-tgtggcctcggc-ttcggtcgtggtgttatagccctttgaaaaataccctgggttggattgaggactgcagcg--agccatta--ggg----atgaactgtgggcgcttggctttgccttgaaagaaatcttt------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Absidia_cylindrospora_JX961699 ------------------------------------------------------------aag-aaataacaatgattccctcagta-c-gcgagtgaacagggaaaagctcaaagttggaacctcctggccctaggtctggcgga--ttgtaaact---aaagctctcgagtagttcggctagcc-tggtaaaaaagttctctggaaagggacgacatggagggtgaaatccccgtctttggccagagca-tagtccaacgtttgct-t-ggaagtgaa-gagtcaggttgtttggtattgcagcctaaagctggaggtaaatctctcctaaagctaaatattgacgaaagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttgaaaagagggtcaaaaagtacgtgaaattgctgaaagggaaccgtatgaaatcagcctgtctctttggtaatcaa-cctggaattcgttctgggtgcactt-gccggtga-gt-cagcctgcgacaatttgactYgggggaa-aaaatcggggggaa-tgtggcctcggc-ttcggtcgtggtgttatagccctttgaaaaataccctgggttggattgaggactgcagcg--agcc-ttt--ggg----atgaactgtgggYgcttggctttgccttgaaagaaatct-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Absidia_cylindrospora_var._cylindrospora_JN206588 ---------------------------------------------------gcggaggaaaagaaaataacaatgattccctcagtaacggcgagtgaacagggaaaagctcaaagttggaacctcctggccctaggtctggcgga--ttgtaaact---aaagctctcgagtagttcggctagcc-tggtaaaaaagttctctggaaagggacgacatggagggtgaaatccccgtctttggccagagca-tagtccaacgtttgct-t-ggaagtgaa-gagtcaggttgtttggtattgcagcctaaagctggaggtaaatctctcctaaagctaaatattgacgaaagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttgaaaagagggtcaaaaagtacgtgaaattgctgaaagggaaccgtatgaaatcagcctgtctctttggtaatcaa-cctggaattcgttctgggtgcactt-gccggtga-gt-cagcctgcgacaatttgacttgggggaa-aaaatcggggggaa-tgtggcctcggc-ttcggtcgtggtgttatagccctttgaaaaataccctgggttggattgaggactgcagcg--agcc-ttt--ggg----atgaactgtgggcgcttggctttgccttgaaagaaatctctgcttcgggtggtgtctttctcggcggggtcaactcgcctactttttcttttt-ctcgctta-gtcgca-gcataatgattttatatgac------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Absidia_psychrophilia_KT215321 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ttcggctagcc-tgg?aaaaaagttctctggaaagggacgacatggagggtgaaatccccgtctttggccagagca-tagtccaacgtttgct-t-ggaagtgaa-gagtcaggttgtttggtattgcagcctaaagttggaggtaaatctctcctaaagctaaatattgacgaaagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttgaaaagagggtcaaaaagtacgtgaaattgctgaaagggaaccgtatgaaatcagcttgtttttttggtaatcaa-cctggacctcggtctgggtgcactt-gccagtga-a-acagcctgcgacaattcgatttggaggaa-aaaattattgggaa-tgtggcctctgccttcggttgaggtgttatagccctttaaaaaatactctgggttggattgaggactgcagcg--agctcccctcggggggcatgggttgtgggtgctttgctttgg?aaaagggaaatctctacttcgggtagtgtcttttttaccgaggtgaactcgcctacattccctttct-ctcgcttaggtcgtaggcataatgattttatatgacccgtcttga---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Absidia psychrophilia NG_058544' -------------------------------------------------------------------taacaatgattcccctagtaacggcgagtgaacagggaaaagctcaaagttggaacctcctggccctaggcccggcgga--ttgtaaact---aaagctctcgagtagttcggctagcc-tggtaaaaaagttctctggaaagggacgacatggagggtgaaatccccgtctttggccagagca-tagtccaacgtttgct-t-ggaagtgaa-gagtcaggttgtttggtattgcagcctaaagttggaggtaaatctctcctaaagctaaatattgacgaaagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttgaaaagagggtcaaaaagtacgtgaaattgctgaaagggaaccgtatgaaatcagcttgtttttttggtaatcaa-cctggacctcggtctgggtgcactt-gccagtga-a-acagcctgcgacaattcgattcggaggaa-aaaattattgggaa-tgtggcctctgccttcggttgaggtgttatagccctttaaaaaatactctgggttggattgaggactgcagcg--agctcccctcggggggcatgggttgtgggtgctttgctttggtaaaagggaaatctctacttcgggtagtgtcttttttaccgaggtaaactcgcctatattccctttct-ctcgcttaggtcgtaggcataatgattttatatgacccgtcttgaaacacggaccaa---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Absidia repens NG_058551' -------------------------------------------atcaataagcggaggaaaagaaaataacaatgattcccctagtaacggcgagtgaacagggaaaagctcaaagttggaacctcctggccctaggcctggcgga--ttgtaaact---aaagctctcgagtagttcggctagcc-tggtaaaaaagttctctggaaagggacgacatggagggtgaaatccccgtctttggccagagca-tagtccaacgtttgct-t-gggagtgaa-gagtcaggttgtttggtattgcagcctaaagctggaggtaaatctctcctaaagctaaatattgacgaaagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttgaaaagagggtcaaaaagtacgtgaaattgctgaaagggaaccgtatgaaatcagcttgtctctttggtaatcag-cctgggcttcggcctgggtgcactt-gccagtga-gtacagcctgcgacaattcggggcgaaggaa-aaaatcagggggaa-cgtggcctcagcttccggctgaggtgttatagccctttgaaaaatactttgccctggattgaggactgcagcg--agccgttt--ggg----ataggctaggggcgctttgacttggctgggaggaaatctctatctctggtagtgttcttccagccgggctgaacccgccctttttacttttat-ctcgcttaggtcgtaggcataatga-tttatatgac------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Absidia_pararepens_MT192308 -----------------------------------------------------------------------------------agtaacggcgagtgaacagggaaaagctcaaagttggaacctcctggccctaggtctggcgga--ttgtaaact---aaagctctcgagtagttcggctagcc-tggtaaaaaagttctctggaaagggacgacatagagggtgaaatccccgtctttggccagagca-tagtccaacgtttgct-t-ggaagtgaa-gagtcaggttgtttggtattgcagcctaaagctggaggtaaatctctcctaaagctaaatattgacgaaagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttgaaaagagggtcaaaaagtacgtgaaattgctgaaagggaaccgtatgaaatcagcttgtctctttggtaatcaa-cctggacctcggtctgggtgcactt-gccagtga-gtacagcctgcgacaattcggcgcgaaggaa-aaaatcRgggggaa-tgtggcctcagc-ttcggttgtggtgttatagccctttgaaaaatactttgctctggattgaggactgcagcg--agccattt--ggg----atagactgtgggcgctttgtttggactgggaggaaatttctatctctggtagtgttctttcagttcgagcaaactcgcctacttttctttttt-ctcgcttaggtcgtaggcataatgattttatatgacccgtcttgaaacacggaccaaggagtcc-accatcattgcgagtctttgggtgtagaaacccatgggcggaaggaaactgaccaagatatgaaaccttcaccggtggcaatatcctccagcaaggacgttttatactgaactgactgagagaaagc-aatgatgatgggacccgaaagatggtgaactatacttgaatagggtgaagccagaggaaactct-------------------------------------------------------------------------------- Absidia_pararepens_AF113448 -------------------------------------------------------------------taacaatgattcccctagtaacggcgagtgaacagggaaaagctcaaagttggaacctcctggccctaggtctggcgga--ttgtaaact---aaagctctcgagtagttcggctagcc-tggtaaaaaagttctctggaaagggacgacatagagggtgaaatccccgtctttggccagagca-tagtccaacgtttgct-t-ggaagtgaa-gagtcaggttgtttggtattgcagcctaaagctggaggtaaatctctcctaaagctaaatattgacgaaagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttgaaaagagggtcaaaaagtacgtgaaattgctgaaagggaaccgtatgaaatcagcttgtctctttggtaatcaa-cctggacctcggtctgggtgcactt-gccagtga-gtacagcctgcgacaattcggcgcgaaggaa-aaaatcagggggaa-tgtggcctcagc-ttcggttgtggtgttatagccctttgaaaaatactttgctctggattgaggactgcagcg--agccattt--ggg----atagactgtgggcgctttgtttggactgggaggaaatttctatctctggtagtgttctttcagtttgagcaaactcgcctacttttctttttttctcgcttaggtcgtaggcataatga------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ; END; BEGIN mrbayes; outgroup Chytridium_lagenaria_FJ804156; charset locus1 = 1 -1078; charset excludedchars = 1 -106 767 -1078; exclude excludedchars; partition AllLoci = 1 : locus1; log start filename = 000MucoromycetesLSU.log; END; BEGIN mrbayes; set partition = AllLoci; prset statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); lset nst = 6 rates = invgamma; unlink shape = ( all ) pinvar = ( all ) statefreq = ( all ) revmat = ( all ); mcmcp ngen = 1000000000 nchains = 4 printfreq = 5 temp = 0.2 samplefreq = 5 savebrlens = yes stoprule = yes stopval = 0.01 Relburnin = yes BurninFrac = 0.25 filename = 000MucoromycetesLSU; mcmc; sump; sumt; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 1078; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 1078; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 1078; END; BEGIN TREES; Title 'Fig. 6. Overview Mucoromycetes LSU phylogeny'; ID 017ba61a47dc15; LINK Taxa = Taxa; TRANSLATE [0] 1 Chytridium_lagenaria_FJ804156, [1] 2 Gongronella_brasiliensis_KY114933, [2] 3 Gongronella_lacrispora_MH869737, [3] 4 Gongronella_namwonensis_MN658482, [4] 5 Gongronella_guangdongensis_MN947304, [5] 6 Gongronella_sichuanensis_MK813857, [6] 7 Absidia_bonitoensis_MN977805, [7] 8 Absidia_montepascoalis_MW561560, [8] 9 Absidia_jindoensis_MF926616, [9] 10 Absidia_anomala_JN206593, [10] 11 Absidia_multispora_MN953782, [11] 12 Absidia_caatinguensis_KT308170, [12] 13 'Absidia cylindrospora var. nigra NG_058560', [13] 14 'Absidia panacisoli NG_063948', [14] 15 Absidia_cylindrospora_MK674163, [15] 16 Absidia_cylindrospora_JX961699, [16] 17 Absidia_cylindrospora_var._cylindrospora_JN206588, [17] 18 Absidia_psychrophilia_KT215321, [18] 19 'Absidia psychrophilia NG_058544', [19] 20 'Absidia repens NG_058551', [20] 21 Absidia_pararepens_MT192308, [21] 22 Absidia_pararepens_AF113448; TREE 'Fig. 6. Overview Mucoromycetes LSU phylogeny' = (1:1.026362,(((7:0.0128119,8:0.003570864):0.0121163,(9:0.06633177,(10:0.01554678,11:0.008849922):0.03548484):0.01497402):0.02390483,(12:0.0396999,(13:0.02813751,(14:0.1002548,((15:0.004980633,16:0.001411166,17:0.001661912):0.02860077,((18:0.003165902,19:0.00406397):0.06659916,(20:0.04842314,(21:0.00198402,22:0.001767122):0.02086198):0.03658885):0.02117527):0.02753745):0.02359109):0.05787752):0.05226476):0.5426836,((5:0.002533318,6:0.001233255):0.002599762,2:0.005208589,3:0.001202301,4:0.001306125):0.07081844); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1630594339634; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6773708536648799416; tell It; setDefaultOrder 0 3 4 5 1 2 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3666742678069003618; mqVersion 370; checksumv 0 3 2564642284 null getNumChars 1078 numChars 1078 getNumTaxa 22 numTaxa 22 short true bits 3458764513820540943 states 15 sumSquaresStatesOnly 370998.0 sumSquares -1.90439574130959E22 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 259; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 941 881; setLocation 854 166; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #6773708536648799416 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #6773708536648799416; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 682 809; setLocation 854 166; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #6773708536648799416 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 017ba61a47dc15; toggleUseWeights off; endTell; setAssignedID 2504.1630579348777.8827795810204734633; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 682 809; setLocation 854 166; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; setSelectedTaxonHighlightMode 1; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; setTaxonNameStyler #mesquite.trees.NoColorForTaxon.NoColorForTaxon; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(1:1.026362,(2:0.005208589,3:0.001202301,4:0.001306125,(5:0.002533318,6:0.001233255):0.002599762):0.07081844,(((7:0.0128119,8:0.003570864):0.0121163,(9:0.06633177,(10:0.01554678,11:0.008849922):0.03548484):0.01497402):0.02390483,(12:0.0396999,(13:0.02813751,(14:0.1002548,((15:0.004980633,16:0.001411166,17:0.001661912):0.02860077,((18:0.003165902,19:0.00406397):0.06659916,(20:0.04842314,(21:0.00198402,22:0.001767122):0.02086198):0.03658885):0.02117527):0.02753745):0.02359109):0.05787752):0.05226476):0.5426836);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3666742678069003618 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 682 809; setLocation 854 166; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleColorOnlyTaxonNames off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;